NCLIV_022010 | conserved hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_022010SP0.0728550.9076620.019483CS pos: 22-23. ASA-KL. Pr: 0.5835
No Results

  • Fasta :-

    >NCLIV_022010 MKRVTAVATLAGTFVHILRASAKLPPYYHTTAQLKDELEKLANGCEGFSVHHEPIDDGHT IEFVTVSRASNNPDRFFMLAGEHPRELISAESALHFLQVLCGKETKLADKARKVLQHTSF QVVVNGNPISRAKVEAGDYCLRGNENNVDLNRNWADHWASAVTSAETNPGNRAFSEPETQ AFAKAVTSFRPDIFLSVHSGEQSLVSVWNEAWLTVC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_022010.fa Sequence name : NCLIV_022010 Sequence length : 216 VALUES OF COMPUTED PARAMETERS Coef20 : 4.857 CoefTot : -0.326 ChDiff : -4 ZoneTo : 35 KR : 5 DE : 0 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.935 1.441 0.050 0.471 MesoH : -0.975 -0.069 -0.547 0.117 MuHd_075 : 24.511 9.720 7.165 4.331 MuHd_095 : 29.387 21.368 8.172 6.389 MuHd_100 : 32.054 24.809 9.448 7.682 MuHd_105 : 32.606 29.518 11.165 8.993 Hmax_075 : 8.750 8.300 0.586 4.070 Hmax_095 : 14.000 21.175 3.426 6.528 Hmax_100 : 15.800 22.100 3.869 6.820 Hmax_105 : 11.433 25.100 1.900 7.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4881 0.5119 DFMC : 0.5014 0.4986
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 216 NCLIV_022010 MKRVTAVATLAGTFVHILRASAKLPPYYHTTAQLKDELEKLANGCEGFSVHHEPIDDGHTIEFVTVSRASNNPDRFFMLA 80 GEHPRELISAESALHFLQVLCGKETKLADKARKVLQHTSFQVVVNGNPISRAKVEAGDYCLRGNENNVDLNRNWADHWAS 160 AVTSAETNPGNRAFSEPETQAFAKAVTSFRPDIFLSVHSGEQSLVSVWNEAWLTVC 240 ................................................................................ 80 ................................................................................ 160 ........................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_022010 2 -----MK|RV 0.079 . NCLIV_022010 3 ----MKR|VT 0.155 . NCLIV_022010 19 TFVHILR|AS 0.087 . NCLIV_022010 23 ILRASAK|LP 0.067 . NCLIV_022010 35 HTTAQLK|DE 0.064 . NCLIV_022010 40 LKDELEK|LA 0.070 . NCLIV_022010 68 EFVTVSR|AS 0.073 . NCLIV_022010 75 ASNNPDR|FF 0.135 . NCLIV_022010 85 LAGEHPR|EL 0.111 . NCLIV_022010 103 LQVLCGK|ET 0.060 . NCLIV_022010 106 LCGKETK|LA 0.079 . NCLIV_022010 110 ETKLADK|AR 0.060 . NCLIV_022010 112 KLADKAR|KV 0.200 . NCLIV_022010 113 LADKARK|VL 0.078 . NCLIV_022010 131 NGNPISR|AK 0.090 . NCLIV_022010 133 NPISRAK|VE 0.057 . NCLIV_022010 142 AGDYCLR|GN 0.079 . NCLIV_022010 152 NNVDLNR|NW 0.087 . NCLIV_022010 172 ETNPGNR|AF 0.107 . NCLIV_022010 184 ETQAFAK|AV 0.101 . NCLIV_022010 190 KAVTSFR|PD 0.074 . ____________________________^_________________

  • Fasta :-

    >NCLIV_022010 ATGAAGCGTGTCACAGCGGTTGCTACCCTCGCGGGCACTTTCGTGCATATACTGAGGGCG TCCGCAAAGTTGCCGCCGTACTACCACACGACGGCCCAGCTCAAAGATGAGCTGGAGAAA TTAGCGAACGGCTGCGAAGGATTTAGTGTGCACCACGAACCAATAGACGACGGCCACACT ATTGAATTCGTCACTGTCTCGCGAGCAAGCAACAATCCAGACAGATTCTTCATGTTGGCG GGTGAACACCCGAGAGAACTAATTTCCGCGGAAAGCGCCCTGCACTTCCTTCAGGTCTTG TGTGGAAAAGAGACGAAGCTGGCCGACAAAGCAAGAAAAGTGCTTCAGCACACGAGCTTC CAAGTCGTTGTGAATGGAAATCCGATTTCGCGGGCGAAGGTGGAGGCGGGTGACTATTGT CTGCGAGGGAACGAGAACAACGTCGATTTAAACCGCAACTGGGCAGATCATTGGGCCTCT GCCGTGACAAGCGCAGAAACGAATCCTGGAAACAGGGCTTTCTCTGAGCCTGAGACTCAA GCATTTGCCAAAGCAGTCACGTCGTTCAGGCCAGACATCTTCCTCTCTGTGCACTCTGGT GAGCAATCTTTGGTTTCCGTCTGGAACGAGGCTTGGCTGACCGTGTGTTAA
  • Download Fasta

  • Fasta :-

    MKRVTAVATLAGTFVHILRASAKLPPYYHTTAQLKDELEKLANGCEGFSVHHEPIDDGHT IEFVTVSRASNNPDRFFMLAGEHPRELISAESALHFLQVLCGKETKLADKARKVLQHTSF QVVVNGNPISRAKVEAGDYCLRGNENNVDLNRNWADHWASAVTSAETNPGNRAFSEPETQ AFAKAVTSFRPDIFLSVHSGEQSLVSVWNEAWLTVC

  • title: Zn binding site
  • coordinates: H83,E86,H198
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_02201070 SVSRASNNPD0.991unspNCLIV_022010175 SNRAFSEPET0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India