NCLIV_022220 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_022220mTP0.0420520.0001130.957835CS pos: 66-67. TFL-SS. Pr: 0.1298
No Results

  • Fasta :-

    >NCLIV_022220 MNASLLFRRTAPGISTASLRRRCLSTALGDTRNPLTARVCTAASGVSAPSSGVRAPAFQR TEKTFLSSAAALQPKAGPAPEYRRVPFVKEDMEKVMEEVPEFKYYYVGKENTNGNIYEGI PLDKSILEPSEIRDYVPPNSNIQYSKLDNGLRIASMDRGGLTASLGLFVHAGSRFEDVTN FGVTHMIQNLAFASTAHLSHLRTVKTIEVLGANAGCVVGREHVVYSAECLRSHMPLLVPM LTGNVLFPRFLPWELKSCKDKLIMARKRLEHMPDQMVSELLHTTAWHNNTLGNKLHCTER SLGYYNPDVIRHYMLQHFSPENMVFVGVNVNHDELCTWLMRAFVDYNAIPPTKRTVAPPV YTGGDVRLETPSPHAHIAVAFETPGGWNGGDLVAYSVLQTIIGGGGAFSTGGPGKGMYTR LYLNVLNQNEWVESAMAFNTQYTDSGIFGLYMLVDPTKSANAVKVMAEQFGKMGSVTKEE LHRAKNSLKSSIFMNLECRGIVMEDVGRQLLMSNRVISPQEFCAAIDAVGEADIKRVVDA MYKKPPTVVVYGDVSTVPHYEEVRAALRAAGVGK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_022220.fa Sequence name : NCLIV_022220 Sequence length : 574 VALUES OF COMPUTED PARAMETERS Coef20 : 4.938 CoefTot : 1.130 ChDiff : 5 ZoneTo : 80 KR : 11 DE : 2 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.465 1.382 0.225 0.632 MesoH : 0.028 0.542 -0.254 0.300 MuHd_075 : 35.583 26.357 10.312 9.087 MuHd_095 : 35.667 23.046 8.008 8.046 MuHd_100 : 28.095 17.425 7.213 6.535 MuHd_105 : 28.926 17.275 7.949 6.307 Hmax_075 : 15.100 20.533 4.687 5.290 Hmax_095 : 14.600 12.863 2.353 4.710 Hmax_100 : 15.000 12.200 1.809 5.100 Hmax_105 : 15.867 18.783 1.799 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0093 0.9907 DFMC : 0.0051 0.9949 This protein is probably imported in mitochondria. f(Ser) = 0.1250 f(Arg) = 0.1125 CMi = 0.54945 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 574 NCLIV_022220 MNASLLFRRTAPGISTASLRRRCLSTALGDTRNPLTARVCTAASGVSAPSSGVRAPAFQRTEKTFLSSAAALQPKAGPAP 80 EYRRVPFVKEDMEKVMEEVPEFKYYYVGKENTNGNIYEGIPLDKSILEPSEIRDYVPPNSNIQYSKLDNGLRIASMDRGG 160 LTASLGLFVHAGSRFEDVTNFGVTHMIQNLAFASTAHLSHLRTVKTIEVLGANAGCVVGREHVVYSAECLRSHMPLLVPM 240 LTGNVLFPRFLPWELKSCKDKLIMARKRLEHMPDQMVSELLHTTAWHNNTLGNKLHCTERSLGYYNPDVIRHYMLQHFSP 320 ENMVFVGVNVNHDELCTWLMRAFVDYNAIPPTKRTVAPPVYTGGDVRLETPSPHAHIAVAFETPGGWNGGDLVAYSVLQT 400 IIGGGGAFSTGGPGKGMYTRLYLNVLNQNEWVESAMAFNTQYTDSGIFGLYMLVDPTKSANAVKVMAEQFGKMGSVTKEE 480 LHRAKNSLKSSIFMNLECRGIVMEDVGRQLLMSNRVISPQEFCAAIDAVGEADIKRVVDAMYKKPPTVVVYGDVSTVPHY 560 EEVRAALRAAGVGK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_022220 8 NASLLFR|RT 0.121 . NCLIV_022220 9 ASLLFRR|TA 0.132 . NCLIV_022220 20 ISTASLR|RR 0.072 . NCLIV_022220 21 STASLRR|RC 0.083 . NCLIV_022220 22 TASLRRR|CL 0.359 . NCLIV_022220 32 TALGDTR|NP 0.078 . NCLIV_022220 38 RNPLTAR|VC 0.087 . NCLIV_022220 54 APSSGVR|AP 0.095 . NCLIV_022220 60 RAPAFQR|TE 0.077 . NCLIV_022220 63 AFQRTEK|TF 0.097 . NCLIV_022220 75 AAALQPK|AG 0.064 . NCLIV_022220 83 GPAPEYR|RV 0.126 . NCLIV_022220 84 PAPEYRR|VP 0.122 . NCLIV_022220 89 RRVPFVK|ED 0.083 . NCLIV_022220 94 VKEDMEK|VM 0.064 . NCLIV_022220 103 EEVPEFK|YY 0.068 . NCLIV_022220 109 KYYYVGK|EN 0.071 . NCLIV_022220 124 EGIPLDK|SI 0.064 . NCLIV_022220 133 LEPSEIR|DY 0.075 . NCLIV_022220 146 SNIQYSK|LD 0.062 . NCLIV_022220 152 KLDNGLR|IA 0.095 . NCLIV_022220 158 RIASMDR|GG 0.078 . NCLIV_022220 174 FVHAGSR|FE 0.081 . NCLIV_022220 202 AHLSHLR|TV 0.111 . NCLIV_022220 205 SHLRTVK|TI 0.138 . NCLIV_022220 220 AGCVVGR|EH 0.079 . NCLIV_022220 231 YSAECLR|SH 0.113 . NCLIV_022220 249 GNVLFPR|FL 0.124 . NCLIV_022220 256 FLPWELK|SC 0.084 . NCLIV_022220 259 WELKSCK|DK 0.061 . NCLIV_022220 261 LKSCKDK|LI 0.089 . NCLIV_022220 266 DKLIMAR|KR 0.079 . NCLIV_022220 267 KLIMARK|RL 0.107 . NCLIV_022220 268 LIMARKR|LE 0.148 . NCLIV_022220 294 NNTLGNK|LH 0.056 . NCLIV_022220 300 KLHCTER|SL 0.193 . NCLIV_022220 311 YNPDVIR|HY 0.088 . NCLIV_022220 341 LCTWLMR|AF 0.077 . NCLIV_022220 353 NAIPPTK|RT 0.057 . NCLIV_022220 354 AIPPTKR|TV 0.191 . NCLIV_022220 367 YTGGDVR|LE 0.081 . NCLIV_022220 415 STGGPGK|GM 0.070 . NCLIV_022220 420 GKGMYTR|LY 0.105 . NCLIV_022220 458 MLVDPTK|SA 0.109 . NCLIV_022220 464 KSANAVK|VM 0.066 . NCLIV_022220 472 MAEQFGK|MG 0.064 . NCLIV_022220 478 KMGSVTK|EE 0.057 . NCLIV_022220 483 TKEELHR|AK 0.084 . NCLIV_022220 485 EELHRAK|NS 0.059 . NCLIV_022220 489 RAKNSLK|SS 0.074 . NCLIV_022220 499 FMNLECR|GI 0.091 . NCLIV_022220 508 VMEDVGR|QL 0.079 . NCLIV_022220 515 QLLMSNR|VI 0.122 . NCLIV_022220 535 VGEADIK|RV 0.061 . NCLIV_022220 536 GEADIKR|VV 0.318 . NCLIV_022220 543 VVDAMYK|KP 0.054 . NCLIV_022220 544 VDAMYKK|PP 0.089 . NCLIV_022220 564 PHYEEVR|AA 0.084 . NCLIV_022220 568 EVRAALR|AA 0.110 . NCLIV_022220 574 RAAGVGK|-- 0.078 . ____________________________^_________________

  • Fasta :-

    >NCLIV_022220 ATGAATGCGTCTCTCCTCTTCCGCAGAACTGCGCCAGGCATCTCGACTGCCTCGCTTCGT CGCCGGTGCCTCAGCACGGCGCTGGGCGACACGCGAAACCCCCTGACTGCCAGAGTCTGC ACGGCGGCTTCGGGTGTATCTGCACCATCCTCGGGTGTCCGCGCACCGGCGTTCCAGCGA ACAGAGAAGACGTTTCTGAGCAGCGCGGCAGCCTTGCAGCCCAAGGCTGGTCCTGCGCCC GAATACCGCCGCGTCCCCTTCGTCAAGGAAGACATGGAAAAGGTCATGGAAGAGGTTCCA GAGTTCAAGTACTACTACGTCGGCAAGGAAAACACCAATGGTAACATCTACGAAGGCATC CCACTCGACAAAAGCATTCTGGAACCTTCCGAGATCCGCGACTATGTCCCCCCCAACAGC AACATCCAATACTCGAAGCTGGACAACGGGCTGCGCATCGCGTCGATGGACCGCGGGGGC CTTACCGCCTCGCTGGGCCTTTTCGTGCATGCAGGCAGCCGCTTCGAGGATGTGACGAAC TTTGGAGTGACGCACATGATCCAGAACCTCGCGTTCGCCTCCACCGCGCACCTCTCGCAT CTTCGCACGGTTAAGACGATCGAGGTCTTGGGTGCGAACGCCGGATGCGTCGTTGGACGG GAGCACGTGGTGTACAGCGCCGAGTGCCTGCGGTCGCACATGCCGTTGCTGGTTCCCATG CTCACCGGAAACGTTCTCTTTCCGCGCTTTCTTCCGTGGGAACTGAAATCCTGCAAAGAC AAGCTCATCATGGCCCGCAAGCGCCTCGAGCACATGCCCGATCAAATGGTCTCTGAGCTC CTGCATACGACAGCTTGGCACAACAACACCTTAGGCAACAAACTGCACTGCACAGAGCGA AGCCTCGGCTATTACAACCCCGACGTCATCCGCCACTACATGCTCCAGCACTTCTCCCCT GAGAACATGGTGTTTGTTGGCGTGAACGTGAATCACGACGAACTGTGCACGTGGCTGATG CGTGCATTTGTGGACTACAACGCGATTCCGCCGACGAAGAGAACTGTTGCTCCTCCTGTG TACACTGGAGGTGACGTTCGCCTGGAGACGCCGTCGCCGCACGCACACATTGCCGTTGCC TTTGAAACACCGGGCGGTTGGAATGGCGGCGACCTCGTGGCGTACTCTGTTCTGCAAACG ATCATCGGCGGAGGAGGCGCCTTCTCGACGGGCGGTCCGGGAAAAGGCATGTACACGCGC CTGTACTTGAACGTCCTGAACCAGAATGAATGGGTTGAGAGCGCCATGGCGTTCAACACA CAGTACACGGACTCGGGCATCTTTGGGCTGTACATGCTCGTCGATCCCACCAAGTCTGCG AATGCCGTCAAGGTGATGGCCGAGCAGTTCGGAAAGATGGGCTCTGTGACGAAGGAGGAA TTGCACCGCGCGAAAAACTCACTCAAGTCCTCGATTTTCATGAATCTGGAGTGCCGCGGC ATCGTCATGGAAGACGTCGGTCGCCAGCTGCTGATGAGCAACCGCGTCATCTCGCCGCAG GAATTCTGCGCAGCAATCGACGCCGTCGGCGAGGCTGACATCAAGAGAGTTGTCGACGCC ATGTACAAGAAGCCTCCAACCGTCGTTGTCTACGGAGATGTTTCGACGGTCCCGCACTAC GAGGAGGTCCGCGCTGCTCTCCGAGCGGCGGGTGTCGGCAAGTAG
  • Download Fasta

  • Fasta :-

    MNASLLFRRTAPGISTASLRRRCLSTALGDTRNPLTARVCTAASGVSAPSSGVRAPAFQR TEKTFLSSAAALQPKAGPAPEYRRVPFVKEDMEKVMEEVPEFKYYYVGKENTNGNIYEGI PLDKSILEPSEIRDYVPPNSNIQYSKLDNGLRIASMDRGGLTASLGLFVHAGSRFEDVTN FGVTHMIQNLAFASTAHLSHLRTVKTIEVLGANAGCVVGREHVVYSAECLRSHMPLLVPM LTGNVLFPRFLPWELKSCKDKLIMARKRLEHMPDQMVSELLHTTAWHNNTLGNKLHCTER SLGYYNPDVIRHYMLQHFSPENMVFVGVNVNHDELCTWLMRAFVDYNAIPPTKRTVAPPV YTGGDVRLETPSPHAHIAVAFETPGGWNGGDLVAYSVLQTIIGGGGAFSTGGPGKGMYTR LYLNVLNQNEWVESAMAFNTQYTDSGIFGLYMLVDPTKSANAVKVMAEQFGKMGSVTKEE LHRAKNSLKSSIFMNLECRGIVMEDVGRQLLMSNRVISPQEFCAAIDAVGEADIKRVVDA MYKKPPTVVVYGDVSTVPHYEEVRAALRAAGVGK

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_022220518 SNRVISPQEF0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India