NCLIV_030070 | conserved hypothetical protein

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  • Fasta :-

    >NCLIV_030070 MAGQGKGEQATPAAPTPATEEIADTAATDSQQEEEQKRLELILSNMRRVSNLYSEAELLR VVEDYVADCMTHLGYQEYRLYSNLRLLIASFACCVAAYASFGVPFPTDGPYLKLSIVTFF VSLLVLLFIETVCVKNAIACFKDKDGEAFFIDSHIDRNTNDLVLAIRQKSLYLSTASNVG RFFDSKGYLLIDTLYEELTNLLQDFENGLSDATKLAAGRRKKKNA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_030070.fa Sequence name : NCLIV_030070 Sequence length : 225 VALUES OF COMPUTED PARAMETERS Coef20 : 2.829 CoefTot : -0.877 ChDiff : -7 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.982 2.571 0.493 0.834 MesoH : 0.471 1.130 0.001 0.427 MuHd_075 : 7.618 2.721 1.352 0.569 MuHd_095 : 6.926 10.343 3.066 2.163 MuHd_100 : 5.845 6.975 2.658 1.653 MuHd_105 : 7.290 5.115 2.357 1.679 Hmax_075 : 5.600 -0.000 -0.481 2.030 Hmax_095 : 7.800 2.713 0.587 2.890 Hmax_100 : 7.800 2.300 0.587 2.890 Hmax_105 : 7.700 3.500 0.782 3.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9978 0.0022 DFMC : 0.9973 0.0027
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 225 NCLIV_030070 MAGQGKGEQATPAAPTPATEEIADTAATDSQQEEEQKRLELILSNMRRVSNLYSEAELLRVVEDYVADCMTHLGYQEYRL 80 YSNLRLLIASFACCVAAYASFGVPFPTDGPYLKLSIVTFFVSLLVLLFIETVCVKNAIACFKDKDGEAFFIDSHIDRNTN 160 DLVLAIRQKSLYLSTASNVGRFFDSKGYLLIDTLYEELTNLLQDFENGLSDATKLAAGRRKKKNA 240 ................................................................................ 80 ................................................................................ 160 ................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_030070 6 -MAGQGK|GE 0.067 . NCLIV_030070 37 QQEEEQK|RL 0.068 . NCLIV_030070 38 QEEEQKR|LE 0.105 . NCLIV_030070 47 LILSNMR|RV 0.077 . NCLIV_030070 48 ILSNMRR|VS 0.127 . NCLIV_030070 60 SEAELLR|VV 0.137 . NCLIV_030070 79 LGYQEYR|LY 0.088 . NCLIV_030070 85 RLYSNLR|LL 0.096 . NCLIV_030070 113 TDGPYLK|LS 0.063 . NCLIV_030070 135 IETVCVK|NA 0.066 . NCLIV_030070 142 NAIACFK|DK 0.085 . NCLIV_030070 144 IACFKDK|DG 0.084 . NCLIV_030070 157 IDSHIDR|NT 0.114 . NCLIV_030070 167 DLVLAIR|QK 0.087 . NCLIV_030070 169 VLAIRQK|SL 0.081 . NCLIV_030070 181 TASNVGR|FF 0.173 . NCLIV_030070 186 GRFFDSK|GY 0.065 . NCLIV_030070 214 GLSDATK|LA 0.078 . NCLIV_030070 219 TKLAAGR|RK 0.072 . NCLIV_030070 220 KLAAGRR|KK 0.127 . NCLIV_030070 221 LAAGRRK|KK 0.099 . NCLIV_030070 222 AAGRRKK|KN 0.254 . NCLIV_030070 223 AGRRKKK|NA 0.455 . ____________________________^_________________

  • Fasta :-

    >NCLIV_030070 ATGGCAGGACAAGGCAAAGGGGAACAGGCAACTCCCGCGGCTCCTACTCCGGCGACAGAA GAAATTGCCGACACTGCCGCGACAGACTCGCAGCAGGAGGAAGAACAAAAGCGCCTCGAG TTAATCCTCTCGAACATGCGGCGCGTTTCTAACTTGTACAGCGAGGCGGAACTCTTGCGC GTCGTGGAGGATTATGTCGCTGACTGCATGACTCACTTAGGCTACCAGGAGTACCGGCTG TACTCGAACCTTCGCCTCTTGATCGCGTCGTTCGCGTGCTGCGTCGCCGCCTACGCGTCC TTCGGCGTCCCCTTCCCCACAGACGGCCCATACCTCAAACTCTCGATTGTTACCTTTTTC GTTTCCCTTCTCGTCCTCCTCTTCATCGAGACGGTTTGCGTGAAAAACGCCATCGCCTGC TTCAAAGACAAAGACGGAGAAGCCTTCTTCATCGACAGCCACATCGACCGGAACACGAAT GACCTCGTCCTTGCCATTCGCCAGAAAAGCCTGTACCTCTCCACAGCCTCCAACGTCGGC CGTTTCTTCGACAGCAAGGGGTATTTGTTGATTGACACACTGTACGAGGAGCTGACGAAC CTGCTGCAAGACTTCGAGAATGGCCTCTCAGACGCCACCAAACTCGCAGCTGGCCGCAGG AAAAAGAAGAACGCATGA
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India