NCLIV_030480 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_030480OTHER0.9945260.0003960.005078
No Results

  • Fasta :-

    >NCLIV_030480 MAIRSSRGPASGVVYWEKQGADRMCALHCINSLLQGPVYDETEMSKIGYEFDRRERQLMA EGMDASAYKEFFDEESGNVAHDGYFNVSVLMECLRKQHIQCLSTSKPEVCHVLADPSREE GFIFNLNEHWFTIRKVEGIWYNLDSLKPSPVAVSAEQLKNLLTSLSIQGYVSFVARRDVG SLPAPEPQQVRMNQFYLTKRDIEELQRQAKEKEAQDAKAAAAHGDDGESKRSFLAWAPRG RREEHSWPSEGGYRLDAPGNASEEVSRSGSPEASSVGAGLEGVDDDPELREALRLSLETY KQEMQAPPEEPPADAQNICAVVVRLRNGEKVMRRFYQADTMERVFQWAEYEASQRDSTTL GSCVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELHELGFQRREQLMMMHL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_030480.fa Sequence name : NCLIV_030480 Sequence length : 414 VALUES OF COMPUTED PARAMETERS Coef20 : 3.798 CoefTot : -0.022 ChDiff : -15 ZoneTo : 16 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.518 0.894 -0.066 0.366 MesoH : -0.913 0.054 -0.511 0.144 MuHd_075 : 22.112 3.775 4.091 1.973 MuHd_095 : 21.091 11.243 3.330 4.736 MuHd_100 : 31.118 12.949 5.985 6.539 MuHd_105 : 33.368 12.742 6.993 6.863 Hmax_075 : 9.450 5.833 0.583 2.987 Hmax_095 : 2.363 7.263 -1.011 2.494 Hmax_100 : 10.900 12.200 0.386 3.920 Hmax_105 : 11.200 9.000 0.781 4.515 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8706 0.1294 DFMC : 0.7448 0.2552
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 414 NCLIV_030480 MAIRSSRGPASGVVYWEKQGADRMCALHCINSLLQGPVYDETEMSKIGYEFDRRERQLMAEGMDASAYKEFFDEESGNVA 80 HDGYFNVSVLMECLRKQHIQCLSTSKPEVCHVLADPSREEGFIFNLNEHWFTIRKVEGIWYNLDSLKPSPVAVSAEQLKN 160 LLTSLSIQGYVSFVARRDVGSLPAPEPQQVRMNQFYLTKRDIEELQRQAKEKEAQDAKAAAAHGDDGESKRSFLAWAPRG 240 RREEHSWPSEGGYRLDAPGNASEEVSRSGSPEASSVGAGLEGVDDDPELREALRLSLETYKQEMQAPPEEPPADAQNICA 320 VVVRLRNGEKVMRRFYQADTMERVFQWAEYEASQRDSTTLGSCVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELHE 400 LGFQRREQLMMMHL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_030480 4 ---MAIR|SS 0.105 . NCLIV_030480 7 MAIRSSR|GP 0.249 . NCLIV_030480 18 GVVYWEK|QG 0.063 . NCLIV_030480 23 EKQGADR|MC 0.073 . NCLIV_030480 46 DETEMSK|IG 0.056 . NCLIV_030480 53 IGYEFDR|RE 0.083 . NCLIV_030480 54 GYEFDRR|ER 0.086 . NCLIV_030480 56 EFDRRER|QL 0.230 . NCLIV_030480 69 MDASAYK|EF 0.084 . NCLIV_030480 95 VLMECLR|KQ 0.079 . NCLIV_030480 96 LMECLRK|QH 0.086 . NCLIV_030480 106 QCLSTSK|PE 0.053 . NCLIV_030480 118 VLADPSR|EE 0.091 . NCLIV_030480 134 EHWFTIR|KV 0.118 . NCLIV_030480 135 HWFTIRK|VE 0.070 . NCLIV_030480 147 YNLDSLK|PS 0.062 . NCLIV_030480 159 VSAEQLK|NL 0.066 . NCLIV_030480 176 YVSFVAR|RD 0.121 . NCLIV_030480 177 VSFVARR|DV 0.323 . NCLIV_030480 191 PEPQQVR|MN 0.080 . NCLIV_030480 199 NQFYLTK|RD 0.059 . NCLIV_030480 200 QFYLTKR|DI 0.283 . NCLIV_030480 207 DIEELQR|QA 0.093 . NCLIV_030480 210 ELQRQAK|EK 0.204 . NCLIV_030480 212 QRQAKEK|EA 0.118 . NCLIV_030480 218 KEAQDAK|AA 0.082 . NCLIV_030480 230 GDDGESK|RS 0.056 . NCLIV_030480 231 DDGESKR|SF 0.283 . NCLIV_030480 239 FLAWAPR|GR 0.100 . NCLIV_030480 241 AWAPRGR|RE 0.098 . NCLIV_030480 242 WAPRGRR|EE 0.245 . NCLIV_030480 254 PSEGGYR|LD 0.081 . NCLIV_030480 267 ASEEVSR|SG 0.146 . NCLIV_030480 290 DDDPELR|EA 0.065 . NCLIV_030480 294 ELREALR|LS 0.078 . NCLIV_030480 301 LSLETYK|QE 0.066 . NCLIV_030480 324 ICAVVVR|LR 0.089 . NCLIV_030480 326 AVVVRLR|NG 0.089 . NCLIV_030480 330 RLRNGEK|VM 0.057 . NCLIV_030480 333 NGEKVMR|RF 0.096 . NCLIV_030480 334 GEKVMRR|FY 0.160 . NCLIV_030480 343 QADTMER|VF 0.076 . NCLIV_030480 355 EYEASQR|DS 0.100 . NCLIV_030480 371 LVQTVPK|RK 0.066 . NCLIV_030480 372 VQTVPKR|KF 0.195 . NCLIV_030480 373 QTVPKRK|FC 0.090 . NCLIV_030480 376 PKRKFCK|LG 0.086 . NCLIV_030480 394 TEGIPIK|DR 0.082 . NCLIV_030480 396 GIPIKDR|EL 0.102 . NCLIV_030480 405 HELGFQR|RE 0.076 . NCLIV_030480 406 ELGFQRR|EQ 0.115 . ____________________________^_________________

  • Fasta :-

    >NCLIV_030480 ATGGCAATACGCTCTTCGCGAGGACCGGCCTCCGGCGTGGTGTATTGGGAGAAGCAGGGG GCAGATCGCATGTGCGCGTTGCACTGCATCAACTCGTTGCTGCAAGGTCCCGTCTACGAC GAAACGGAAATGTCGAAGATCGGCTACGAGTTCGACCGGAGAGAGCGACAGTTGATGGCC GAGGGAATGGACGCCTCGGCTTACAAAGAGTTCTTCGACGAGGAGTCCGGGAACGTCGCC CACGATGGATACTTCAACGTCTCCGTGCTGATGGAGTGCCTGCGCAAACAGCACATCCAG TGTCTCTCCACCTCAAAACCCGAAGTCTGCCATGTCCTCGCCGACCCCAGCAGAGAGGAA GGCTTCATCTTCAACTTGAATGAGCACTGGTTCACCATCCGAAAGGTCGAAGGCATTTGG TACAACTTGGACAGTTTGAAGCCGAGCCCAGTGGCGGTGTCGGCGGAGCAGTTGAAGAAT CTTTTGACGTCGCTGTCGATCCAAGGTTACGTCTCGTTCGTCGCGCGGAGAGACGTGGGT TCCCTTCCCGCGCCCGAGCCCCAGCAGGTTCGCATGAACCAATTCTACTTGACGAAACGC GATATCGAAGAGTTGCAGCGCCAGGCGAAAGAGAAAGAAGCGCAAGACGCAAAGGCGGCG GCTGCTCACGGGGATGATGGGGAGTCGAAGCGATCGTTCCTCGCTTGGGCGCCGCGCGGA AGGCGGGAGGAACATTCCTGGCCTTCAGAGGGAGGCTACCGCCTGGACGCCCCGGGAAAC GCCAGCGAAGAAGTCAGCAGAAGCGGGAGCCCGGAGGCGAGCAGCGTCGGCGCAGGCTTG GAGGGTGTCGACGACGATCCAGAACTCCGTGAGGCTCTGCGCCTTTCTCTCGAAACCTAC AAGCAGGAAATGCAGGCCCCACCGGAGGAACCGCCTGCAGACGCTCAAAATATCTGCGCG GTTGTGGTTCGGCTTAGAAACGGAGAAAAAGTGATGCGACGCTTTTACCAGGCGGACACC ATGGAGCGCGTTTTCCAGTGGGCCGAGTACGAGGCCTCGCAACGCGACTCCACGACTCTC GGATCCTGCGTTCTCGTTCAGACAGTCCCCAAGCGGAAGTTTTGCAAGTTGGGTGGCCAG ATTTGTCTGTGTGAAGGCGACACGGAGGGAATTCCGATTAAAGATCGAGAGCTCCACGAG TTGGGTTTCCAAAGACGTGAACAGCTGATGATGATGCACCTTTGA
  • Download Fasta

  • Fasta :-

    MAIRSSRGPASGVVYWEKQGADRMCALHCINSLLQGPVYDETEMSKIGYEFDRRERQLMA EGMDASAYKEFFDEESGNVAHDGYFNVSVLMECLRKQHIQCLSTSKPEVCHVLADPSREE GFIFNLNEHWFTIRKVEGIWYNLDSLKPSPVAVSAEQLKNLLTSLSIQGYVSFVARRDVG SLPAPEPQQVRMNQFYLTKRDIEELQRQAKEKEAQDAKAAAAHGDDGESKRSFLAWAPRG RREEHSWPSEGGYRLDAPGNASEEVSRSGSPEASSVGAGLEGVDDDPELREALRLSLETY KQEMQAPPEEPPADAQNICAVVVRLRNGEKVMRRFYQADTMERVFQWAEYEASQRDSTTL GSCVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELHELGFQRREQLMMMHL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_030480117 SLADPSREEG0.993unspNCLIV_030480270 SSRSGSPEAS0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India