NCLIV_035740 | putative cysteine protease domain containing protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_035740SP0.0195480.9701740.010277CS pos: 18-19. CAA-LQ. Pr: 0.8969
No Results

  • Fasta :-

    >NCLIV_035740 MRSLVAILTFLFVQRCAALQPHLPSQSLRLLVGNALMPQMSHPCTSREYVADAVLRRLSR GSRDDLISDESVNNLLPGCLEVRDMPYRMHAREVPGDGACLFASVAACLWWSAFETHADL NDPAFLDMIGSLRQLAVDTLQDTNVSTLVLEGDEVLPRSSLVNLAAADYNTTPAAYCERM RLPNTWGGGPEIVALSHALRRVIVVYEVHDPSLRSGNSQGSSAHCMHPVCLGQLSSSDGT AQNAPNQTALKVIACLGFPQNVAEEPLHILFTSSAACSTGLRPHAGQTADHFLPLFPAVS RK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_035740.fa Sequence name : NCLIV_035740 Sequence length : 302 VALUES OF COMPUTED PARAMETERS Coef20 : 5.149 CoefTot : 0.268 ChDiff : -6 ZoneTo : 47 KR : 4 DE : 0 CleavSite : 39 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 1.888 0.349 0.654 MesoH : -0.057 0.437 -0.266 0.246 MuHd_075 : 31.829 21.759 7.569 8.145 MuHd_095 : 27.441 18.704 9.029 6.320 MuHd_100 : 30.324 17.924 8.987 6.608 MuHd_105 : 26.229 14.932 6.665 5.910 Hmax_075 : 11.113 16.900 3.041 4.515 Hmax_095 : 9.100 9.800 1.589 3.395 Hmax_100 : 9.700 13.800 2.463 3.760 Hmax_105 : 4.800 11.100 0.768 2.990 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2185 0.7815 DFMC : 0.0905 0.9095 This protein is probably imported in mitochondria. f(Ser) = 0.1064 f(Arg) = 0.0851 CMi = 0.56243 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 302 NCLIV_035740 MRSLVAILTFLFVQRCAALQPHLPSQSLRLLVGNALMPQMSHPCTSREYVADAVLRRLSRGSRDDLISDESVNNLLPGCL 80 EVRDMPYRMHAREVPGDGACLFASVAACLWWSAFETHADLNDPAFLDMIGSLRQLAVDTLQDTNVSTLVLEGDEVLPRSS 160 LVNLAAADYNTTPAAYCERMRLPNTWGGGPEIVALSHALRRVIVVYEVHDPSLRSGNSQGSSAHCMHPVCLGQLSSSDGT 240 AQNAPNQTALKVIACLGFPQNVAEEPLHILFTSSAACSTGLRPHAGQTADHFLPLFPAVSRK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_035740 2 -----MR|SL 0.175 . NCLIV_035740 15 TFLFVQR|CA 0.101 . NCLIV_035740 29 LPSQSLR|LL 0.119 . NCLIV_035740 47 SHPCTSR|EY 0.074 . NCLIV_035740 56 VADAVLR|RL 0.087 . NCLIV_035740 57 ADAVLRR|LS 0.158 . NCLIV_035740 60 VLRRLSR|GS 0.242 . NCLIV_035740 63 RLSRGSR|DD 0.312 . NCLIV_035740 83 PGCLEVR|DM 0.083 . NCLIV_035740 88 VRDMPYR|MH 0.091 . NCLIV_035740 92 PYRMHAR|EV 0.138 . NCLIV_035740 133 DMIGSLR|QL 0.077 . NCLIV_035740 158 GDEVLPR|SS 0.112 . NCLIV_035740 179 PAAYCER|MR 0.079 . NCLIV_035740 181 AYCERMR|LP 0.082 . NCLIV_035740 200 ALSHALR|RV 0.143 . NCLIV_035740 201 LSHALRR|VI 0.164 . NCLIV_035740 214 VHDPSLR|SG 0.099 . NCLIV_035740 251 PNQTALK|VI 0.057 . NCLIV_035740 282 ACSTGLR|PH 0.080 . NCLIV_035740 301 LFPAVSR|K- 0.079 . NCLIV_035740 302 FPAVSRK|-- 0.130 . ____________________________^_________________

  • Fasta :-

    >NCLIV_035740 ATGAGATCTCTCGTCGCGATCCTTACGTTTCTTTTCGTCCAAAGGTGTGCAGCCCTGCAG CCTCATCTTCCATCTCAGAGTTTGCGACTACTCGTCGGGAACGCTCTTATGCCACAGATG AGCCACCCCTGCACGTCTCGTGAATACGTTGCTGATGCCGTCTTGAGGAGGCTTTCCCGG GGCAGCAGAGATGACCTCATTTCGGACGAATCTGTAAACAACCTTCTTCCGGGATGCCTA GAAGTTAGGGACATGCCCTACCGCATGCATGCTAGGGAGGTGCCCGGCGACGGCGCCTGC CTTTTCGCGTCAGTGGCTGCATGCTTATGGTGGAGTGCCTTTGAGACGCATGCAGATCTT AATGATCCTGCGTTCCTGGACATGATCGGCTCTCTTCGGCAGCTAGCAGTTGACACGCTA CAGGATACAAATGTTTCAACCCTCGTACTAGAAGGCGACGAGGTGCTGCCGCGTAGCAGC CTGGTCAATCTGGCTGCGGCGGACTACAATACAACTCCCGCGGCGTATTGCGAAAGGATG CGCCTGCCGAACACGTGGGGCGGAGGTCCGGAGATCGTTGCTCTGAGCCACGCACTCCGA CGTGTTATTGTCGTCTACGAGGTACACGACCCGAGTCTGCGGAGCGGAAACTCCCAAGGT AGTTCGGCTCACTGCATGCACCCCGTTTGCCTTGGCCAACTTTCGTCAAGTGATGGAACT GCTCAAAATGCACCTAACCAGACTGCACTAAAGGTGATTGCATGTCTTGGCTTCCCCCAA AACGTTGCGGAGGAACCTCTTCACATCTTGTTCACCAGCTCTGCGGCCTGTTCAACTGGC TTACGGCCGCATGCTGGGCAGACAGCGGATCATTTCCTGCCCTTGTTTCCTGCTGTGTCA CGGAAATAG
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  • Fasta :-

    MRSLVAILTFLFVQRCAALQPHLPSQSLRLLVGNALMPQMSHPCTSREYVADAVLRRLSR GSRDDLISDESVNNLLPGCLEVRDMPYRMHAREVPGDGACLFASVAACLWWSAFETHADL NDPAFLDMIGSLRQLAVDTLQDTNVSTLVLEGDEVLPRSSLVNLAAADYNTTPAAYCERM RLPNTWGGGPEIVALSHALRRVIVVYEVHDPSLRSGNSQGSSAHCMHPVCLGQLSSSDGT AQNAPNQTALKVIACLGFPQNVAEEPLHILFTSSAACSTGLRPHAGQTADHFLPLFPAVS RK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_03574059 SLRRLSRGSR0.994unspNCLIV_03574062 SLSRGSRDDL0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India