NCLIV_036720 | CBR-CSN-5 protein, related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_036720OTHER0.9733480.0068450.019807
No Results

  • Fasta :-

    >NCLIV_036720 MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMG LMLGEFIDDYTVRVVDVFSMPQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSH PGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKVVIDCFRLINPHLLMLGQDLR QTTSNIGHLQRPTISALVHGLNRNYYSIVINYRKNELENQMLLNLHKNKWNDALKLKPFD EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLESDVDTLMTEN ILHSLGTMIDTLIF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_036720.fa Sequence name : NCLIV_036720 Sequence length : 314 VALUES OF COMPUTED PARAMETERS Coef20 : 3.396 CoefTot : -1.826 ChDiff : -4 ZoneTo : 25 KR : 2 DE : 0 CleavSite : 27 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.359 -0.075 0.513 MesoH : -0.575 0.324 -0.397 0.207 MuHd_075 : 21.386 15.076 7.020 5.582 MuHd_095 : 33.669 22.019 8.249 8.012 MuHd_100 : 22.718 22.893 5.771 6.149 MuHd_105 : 23.048 22.736 5.186 5.995 Hmax_075 : 9.800 7.583 1.488 5.647 Hmax_095 : 14.437 18.725 2.525 5.845 Hmax_100 : 21.700 21.800 2.141 6.880 Hmax_105 : 8.750 9.625 2.311 3.631 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3916 0.6084 DFMC : 0.5690 0.4310
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 314 NCLIV_036720 MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFIDDYTVRVVDVFSM 80 PQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSHPGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKV 160 VIDCFRLINPHLLMLGQDLRQTTSNIGHLQRPTISALVHGLNRNYYSIVINYRKNELENQMLLNLHKNKWNDALKLKPFD 240 EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLESDVDTLMTENILHSLGTMIDTLIF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_036720 9 GLPSNLR|GL 0.094 . NCLIV_036720 25 GVGPPNR|DQ 0.102 . NCLIV_036720 45 SSLALLK|ML 0.068 . NCLIV_036720 48 ALLKMLK|HG 0.067 . NCLIV_036720 51 KMLKHGR|AG 0.102 . NCLIV_036720 73 IDDYTVR|VV 0.099 . NCLIV_036720 105 EMLEQLK|RT 0.064 . NCLIV_036720 106 MLEQLKR|TG 0.149 . NCLIV_036720 109 QLKRTGR|PE 0.235 . NCLIV_036720 144 FEQLNPR|AV 0.159 . NCLIV_036720 157 DPIQSVK|GK 0.062 . NCLIV_036720 159 IQSVKGK|VV 0.122 . NCLIV_036720 166 VVIDCFR|LI 0.090 . NCLIV_036720 180 MLGQDLR|QT 0.089 . NCLIV_036720 191 NIGHLQR|PT 0.109 . NCLIV_036720 203 LVHGLNR|NY 0.080 . NCLIV_036720 213 SIVINYR|KN 0.088 . NCLIV_036720 214 IVINYRK|NE 0.066 . NCLIV_036720 227 MLLNLHK|NK 0.056 . NCLIV_036720 229 LNLHKNK|WN 0.069 . NCLIV_036720 235 KWNDALK|LK 0.061 . NCLIV_036720 237 NDALKLK|PF 0.067 . NCLIV_036720 251 ESAACTK|SM 0.075 . NCLIV_036720 254 ACTKSMK|EL 0.073 . NCLIV_036720 262 LSEQYNK|MV 0.080 . NCLIV_036720 269 MVQEEIK|KT 0.069 . NCLIV_036720 270 VQEEIKK|TP 0.078 . NCLIV_036720 279 EQLVVER|AG 0.069 . NCLIV_036720 282 VVERAGK|VD 0.093 . NCLIV_036720 286 AGKVDAK|KR 0.060 . NCLIV_036720 287 GKVDAKK|RL 0.111 . NCLIV_036720 288 KVDAKKR|LE 0.220 . ____________________________^_________________

  • Fasta :-

    >NCLIV_036720 ATGGCGGGTTTGCCTTCGAACCTTCGAGGCCTGCTTCAGCAGTTTGGGGGCATGGGCGTC GGTCCACCAAATCGGGATCAACCGATGGCCGACACCTCCGAGCAGGTGTACATTTCATCT CTTGCGCTGTTGAAGATGCTCAAGCATGGGAGGGCTGGAGTCCCTATGGAAGTCATGGGT CTCATGCTCGGAGAGTTCATTGACGATTACACCGTCCGTGTCGTGGACGTATTCTCCATG CCGCAATCAGGCAACAGTGTCAGTGTCGAGGCCGTGGACCCAGTGTACCAGACAGAGATG TTGGAACAGTTGAAAAGGACAGGCCGTCCGGAGATGGTTGTCGGCTGGTACCATTCCCAC CCGGGTTTCGGCTGTTGGTTCTCAGGAACGGATGTAAACACTCAGCAGAGCTTTGAGCAG CTGAACCCGAGGGCTGTGGGAGTCGTCGTGGACCCGATCCAGTCGGTCAAAGGCAAAGTT GTTATTGACTGCTTCCGTCTGATTAATCCTCATCTTCTTATGCTTGGCCAAGACCTGCGA CAGACGACAAGCAACATCGGCCACCTTCAGCGACCGACAATCTCCGCGCTTGTCCACGGC TTGAATCGGAACTACTACTCCATTGTGATCAATTACCGGAAAAATGAGTTGGAGAACCAG ATGCTCCTGAATCTCCACAAGAATAAGTGGAACGACGCTCTGAAACTTAAGCCATTCGAC GAAATGGCTGCGGAGAGTGCGGCGTGTACCAAGTCGATGAAGGAATTGTCGGAGCAGTAC AACAAAATGGTTCAAGAAGAAATCAAAAAGACGCCTGAGCAGCTGGTGGTCGAGCGTGCT GGGAAAGTCGATGCCAAGAAGCGACTGGAGAGTGATGTAGACACTTTGATGACGGAAAAC ATTCTCCACTCTTTGGGCACAATGATTGATACTCTCATCTTCTGA
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  • Fasta :-

    MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMG LMLGEFIDDYTVRVVDVFSMPQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSH PGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKVVIDCFRLINPHLLMLGQDLR QTTSNIGHLQRPTISALVHGLNRNYYSIVINYRKNELENQMLLNLHKNKWNDALKLKPFD EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLESDVDTLMTEN ILHSLGTMIDTLIF

  • title: MPN+ (JAMM) motif
  • coordinates: E57,H118,H120,S128,D131
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_036720252 SACTKSMKEL0.99unspNCLIV_036720291 SKRLESDVDT0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India