NCLIV_037760 | Rhomboid-6, isoform A, related

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_037760OTHER0.7494510.2477880.002761
No Results

  • Fasta :-

    >NCLIV_037760 MAGVQVWTSATVMASSTLSPVRGGSDGKRNDGLCVELGQSATLMRDTLAEAAATRGPPAP IRPGVGASATSEKDSPHKDGALPNRGSRGSLQSAVPAAATQKAATGELSSPSATDSHPTP GTEAVNDSAAAMVANVSGGTPPEHAGANSREIPADGVPVEEALQAIGDDDPLIHTLPDGM VGRRAPANPFNSPMFAKLRGKKKKVRPKVRDPKLKNNPLRGRLVVCISTTALLCWIFMWE MLYNYTSFNGRCVSPVMYPDYKLETEKQRQPYVIRYGYGGCQYNLGKLAYPRAAFGTDAG DKGWPVDLVPNGSAGASLSSWESPNARILRHLGGLETNYIREYSETFRLFTSMYMHGGWM HILINLSCQIQILWIIEPDWGFWRTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALL GALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTDNYAHMGGALGGILWGFASI TTVSACDKCTLGERMATTPPFSWCVPKKTQEKLLEIAKARKADAIRRRKLQAIQKKKAGG ARGKAMYAVKMRLQEEGRPPCKMSFREWVIRGLCAATLLAYWVILFLYLLDPSLYKSYSP PGQLKFSGWLYCKCGTIVYEAPQTYGNLGRFWCFGNEKDASFYLEP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_037760.fa Sequence name : NCLIV_037760 Sequence length : 646 VALUES OF COMPUTED PARAMETERS Coef20 : 4.569 CoefTot : 0.082 ChDiff : 19 ZoneTo : 25 KR : 1 DE : 0 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.659 3.094 0.682 0.999 MesoH : 1.105 1.331 0.166 0.552 MuHd_075 : 10.215 8.182 2.387 2.927 MuHd_095 : 13.854 13.315 3.308 3.433 MuHd_100 : 16.861 14.283 3.960 5.263 MuHd_105 : 19.521 9.894 3.890 5.339 Hmax_075 : 14.800 9.400 1.259 4.320 Hmax_095 : 12.600 14.175 2.216 4.638 Hmax_100 : 14.900 14.200 1.641 5.300 Hmax_105 : 13.183 9.300 0.837 4.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9097 0.0903 DFMC : 0.9443 0.0557
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 646 NCLIV_037760 MAGVQVWTSATVMASSTLSPVRGGSDGKRNDGLCVELGQSATLMRDTLAEAAATRGPPAPIRPGVGASATSEKDSPHKDG 80 ALPNRGSRGSLQSAVPAAATQKAATGELSSPSATDSHPTPGTEAVNDSAAAMVANVSGGTPPEHAGANSREIPADGVPVE 160 EALQAIGDDDPLIHTLPDGMVGRRAPANPFNSPMFAKLRGKKKKVRPKVRDPKLKNNPLRGRLVVCISTTALLCWIFMWE 240 MLYNYTSFNGRCVSPVMYPDYKLETEKQRQPYVIRYGYGGCQYNLGKLAYPRAAFGTDAGDKGWPVDLVPNGSAGASLSS 320 WESPNARILRHLGGLETNYIREYSETFRLFTSMYMHGGWMHILINLSCQIQILWIIEPDWGFWRTTLLFFLGGISGNLLS 400 AVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTDNYAHMGGALGGILWGFASI 480 TTVSACDKCTLGERMATTPPFSWCVPKKTQEKLLEIAKARKADAIRRRKLQAIQKKKAGGARGKAMYAVKMRLQEEGRPP 560 CKMSFREWVIRGLCAATLLAYWVILFLYLLDPSLYKSYSPPGQLKFSGWLYCKCGTIVYEAPQTYGNLGRFWCFGNEKDA 640 SFYLEP 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ...... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_037760 22 STLSPVR|GG 0.103 . NCLIV_037760 28 RGGSDGK|RN 0.058 . NCLIV_037760 29 GGSDGKR|ND 0.177 . NCLIV_037760 45 QSATLMR|DT 0.127 . NCLIV_037760 55 AEAAATR|GP 0.080 . NCLIV_037760 62 GPPAPIR|PG 0.084 . NCLIV_037760 73 ASATSEK|DS 0.081 . NCLIV_037760 78 EKDSPHK|DG 0.061 . NCLIV_037760 85 DGALPNR|GS 0.121 . NCLIV_037760 88 LPNRGSR|GS 0.299 . NCLIV_037760 102 PAAATQK|AA 0.089 . NCLIV_037760 150 HAGANSR|EI 0.089 . NCLIV_037760 183 PDGMVGR|RA 0.109 . NCLIV_037760 184 DGMVGRR|AP 0.099 . NCLIV_037760 197 NSPMFAK|LR 0.076 . NCLIV_037760 199 PMFAKLR|GK 0.096 . NCLIV_037760 201 FAKLRGK|KK 0.056 . NCLIV_037760 202 AKLRGKK|KK 0.126 . NCLIV_037760 203 KLRGKKK|KV 0.219 . NCLIV_037760 204 LRGKKKK|VR 0.154 . NCLIV_037760 206 GKKKKVR|PK 0.089 . NCLIV_037760 208 KKKVRPK|VR 0.076 . NCLIV_037760 210 KVRPKVR|DP 0.102 . NCLIV_037760 213 PKVRDPK|LK 0.107 . NCLIV_037760 215 VRDPKLK|NN 0.065 . NCLIV_037760 220 LKNNPLR|GR 0.110 . NCLIV_037760 222 NNPLRGR|LV 0.095 . NCLIV_037760 251 YTSFNGR|CV 0.175 . NCLIV_037760 262 VMYPDYK|LE 0.061 . NCLIV_037760 267 YKLETEK|QR 0.058 . NCLIV_037760 269 LETEKQR|QP 0.092 . NCLIV_037760 275 RQPYVIR|YG 0.090 . NCLIV_037760 287 CQYNLGK|LA 0.062 . NCLIV_037760 292 GKLAYPR|AA 0.107 . NCLIV_037760 302 GTDAGDK|GW 0.058 . NCLIV_037760 327 WESPNAR|IL 0.120 . NCLIV_037760 330 PNARILR|HL 0.452 . NCLIV_037760 341 LETNYIR|EY 0.082 . NCLIV_037760 348 EYSETFR|LF 0.091 . NCLIV_037760 384 PDWGFWR|TT 0.073 . NCLIV_037760 432 YCVEYWK|SI 0.072 . NCLIV_037760 436 YWKSIPR|PG 0.083 . NCLIV_037760 488 TVSACDK|CT 0.075 . NCLIV_037760 494 KCTLGER|MA 0.079 . NCLIV_037760 507 FSWCVPK|KT 0.078 . NCLIV_037760 508 SWCVPKK|TQ 0.151 . NCLIV_037760 512 PKKTQEK|LL 0.066 . NCLIV_037760 518 KLLEIAK|AR 0.055 . NCLIV_037760 520 LEIAKAR|KA 0.168 . NCLIV_037760 521 EIAKARK|AD 0.076 . NCLIV_037760 526 RKADAIR|RR 0.073 . NCLIV_037760 527 KADAIRR|RK 0.105 . NCLIV_037760 528 ADAIRRR|KL 0.188 . NCLIV_037760 529 DAIRRRK|LQ 0.135 . NCLIV_037760 535 KLQAIQK|KK 0.064 . NCLIV_037760 536 LQAIQKK|KA 0.197 . NCLIV_037760 537 QAIQKKK|AG 0.141 . NCLIV_037760 542 KKAGGAR|GK 0.103 . NCLIV_037760 544 AGGARGK|AM 0.070 . NCLIV_037760 550 KAMYAVK|MR 0.068 . NCLIV_037760 552 MYAVKMR|LQ 0.125 . NCLIV_037760 558 RLQEEGR|PP 0.081 . NCLIV_037760 562 EGRPPCK|MS 0.064 . NCLIV_037760 566 PCKMSFR|EW 0.088 . NCLIV_037760 571 FREWVIR|GL 0.129 . NCLIV_037760 596 LDPSLYK|SY 0.073 . NCLIV_037760 605 SPPGQLK|FS 0.072 . NCLIV_037760 613 SGWLYCK|CG 0.059 . NCLIV_037760 630 TYGNLGR|FW 0.116 . NCLIV_037760 638 WCFGNEK|DA 0.076 . ____________________________^_________________

  • Fasta :-

    >NCLIV_037760 ATGGCCGGGGTTCAGGTGTGGACTTCGGCGACTGTGATGGCATCCTCTACTTTGTCCCCG GTGCGGGGGGGATCGGACGGCAAACGCAACGACGGCCTATGCGTGGAACTGGGGCAAAGC GCTACTCTCATGCGCGACACCCTCGCTGAGGCGGCGGCGACTCGTGGGCCACCTGCACCC ATTCGGCCGGGAGTTGGAGCCTCCGCGACTTCGGAAAAAGACAGCCCTCATAAAGATGGC GCTCTTCCCAACAGGGGTTCGCGCGGCAGTCTTCAATCTGCCGTCCCAGCAGCCGCGACC CAGAAAGCGGCCACAGGCGAGCTGTCCTCGCCCTCTGCGACAGACAGCCATCCGACGCCT GGCACTGAAGCTGTCAACGACTCCGCAGCCGCCATGGTCGCCAACGTCAGCGGCGGGACC CCACCTGAGCACGCAGGCGCGAACTCGCGTGAAATCCCGGCCGATGGGGTTCCAGTAGAA GAGGCGCTTCAGGCAATCGGCGACGATGACCCGTTAATTCACACCTTGCCCGATGGAATG GTCGGGCGTCGCGCACCAGCGAACCCCTTTAACTCTCCGATGTTCGCCAAGTTGAGAGGC AAGAAGAAGAAGGTTCGCCCCAAGGTTCGAGATCCGAAGTTGAAAAACAATCCACTCAGA GGCCGGCTGGTTGTGTGCATCAGCACGACCGCACTTCTTTGCTGGATCTTCATGTGGGAA ATGCTGTACAACTACACGAGCTTCAACGGGCGGTGCGTGAGTCCGGTTATGTATCCGGAC TACAAGTTGGAAACGGAGAAACAGCGACAGCCTTACGTCATTCGATATGGCTACGGAGGC TGTCAGTACAACTTGGGGAAACTGGCGTACCCGCGTGCTGCGTTCGGAACAGATGCGGGC GACAAGGGGTGGCCCGTGGATCTCGTTCCCAACGGCAGCGCTGGAGCTTCTTTGTCGAGC TGGGAGTCTCCGAACGCCCGCATTTTGCGCCATCTGGGAGGTCTAGAAACGAATTACATT CGCGAGTACAGCGAGACGTTCAGGCTGTTCACGTCCATGTACATGCACGGCGGCTGGATG CACATCCTTATCAATCTTTCTTGCCAGATCCAGATTTTGTGGATCATCGAGCCTGATTGG GGCTTTTGGAGAACAACACTGCTGTTCTTCTTAGGAGGCATTTCAGGAAATCTCCTCTCA GCTGTTGCCGACCCTTGCAGCATTACGGTCGGGTCCTCTGGTTCCATGTACGCTCTGCTG GGGGCTCTGATTCCCTACTGCGTTGAATACTGGAAATCAATTCCGCGGCCCGGCTGTATT CTCGTCTTCATGATCGTCGTTGTGATTATTGGCATATTGACCGGCATGGCGGGTTTCACG GACAACTACGCCCACATGGGTGGCGCGTTGGGCGGTATTTTGTGGGGCTTCGCGAGCATT ACGACCGTCTCAGCTTGCGACAAGTGCACCCTGGGTGAACGAATGGCGACGACGCCTCCC TTCAGTTGGTGTGTGCCCAAGAAGACGCAAGAGAAACTCCTTGAGATCGCCAAGGCGCGA AAGGCGGATGCCATCCGCAGACGCAAGCTTCAAGCGATACAGAAGAAGAAGGCAGGAGGT GCGCGGGGCAAGGCCATGTATGCAGTGAAGATGCGTCTGCAGGAAGAAGGCCGTCCTCCT TGCAAGATGAGTTTTAGGGAGTGGGTCATTCGAGGGCTCTGCGCGGCTACCCTGTTAGCG TACTGGGTGATTTTGTTCCTTTACCTGCTGGATCCGTCCCTGTACAAGAGCTACTCTCCG CCCGGCCAGTTGAAGTTCAGCGGGTGGCTGTACTGTAAGTGCGGAACGATCGTGTACGAG GCGCCTCAGACGTATGGCAATCTGGGACGTTTCTGGTGCTTTGGAAACGAGAAGGACGCG TCCTTTTATCTCGAACCGTAG
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  • Fasta :-

    MAGVQVWTSATVMASSTLSPVRGGSDGKRNDGLCVELGQSATLMRDTLAEAAATRGPPAP IRPGVGASATSEKDSPHKDGALPNRGSRGSLQSAVPAAATQKAATGELSSPSATDSHPTP GTEAVNDSAAAMVANVSGGTPPEHAGANSREIPADGVPVEEALQAIGDDDPLIHTLPDGM VGRRAPANPFNSPMFAKLRGKKKKVRPKVRDPKLKNNPLRGRLVVCISTTALLCWIFMWE MLYNYTSFNGRCVSPVMYPDYKLETEKQRQPYVIRYGYGGCQYNLGKLAYPRAAFGTDAG DKGWPVDLVPNGSAGASLSSWESPNARILRHLGGLETNYIREYSETFRLFTSMYMHGGWM HILINLSCQIQILWIIEPDWGFWRTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALL GALIPYCVEYWKSIPRPGCILVFMIVVVIIGILTGMAGFTDNYAHMGGALGGILWGFASI TTVSACDKCTLGERMATTPPFSWCVPKKTQEKLLEIAKARKADAIRRRKLQAIQKKKAGG ARGKAMYAVKMRLQEEGRPPCKMSFREWVIRGLCAATLLAYWVILFLYLLDPSLYKSYSP PGQLKFSGWLYCKCGTIVYEAPQTYGNLGRFWCFGNEKDASFYLEP

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_037760110 SGELSSPSAT0.995unspNCLIV_037760110 SGELSSPSAT0.995unspNCLIV_037760110 SGELSSPSAT0.995unspNCLIV_037760112 SLSSPSATDS0.992unspNCLIV_03776071 SASATSEKDS0.998unspNCLIV_03776075 SSEKDSPHKD0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India