NCLIV_039040 | hypothetical protein

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  • Computed_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_039040OTHER0.9995640.0001560.000280
No Results

  • Fasta :-

    >NCLIV_039040 MPQANIPDWRFANDKGRFSVTSFKGHKLACNVDIKYPDCNKVAILCPGLYATKCHVLLTT IADGLPVNSIRFDFRGNGESEGDEDWSFGGYVDEAKDDLHAVVDACSSYNLEVVCIIGHS RSATTVLLHAAIFDDIPLVVSLAGRYDMRQGLEKHFSSEKFKGFSVLTAGTGMGKQADVL SATLENDKNILKKQGAEVDEKVEFVSPDGRKRVITKKCVLDRLTLDLRQYFSQIKNTKKI LILHGSEDRTVPCEDATQLANALPQNKTKVVIIEKASHSLVDSQAIKTQVVQVIENFIVE NGLSCKKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_039040.fa Sequence name : NCLIV_039040 Sequence length : 308 VALUES OF COMPUTED PARAMETERS Coef20 : 3.691 CoefTot : -0.654 ChDiff : -1 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.953 1.800 0.183 0.628 MesoH : -0.553 0.395 -0.343 0.211 MuHd_075 : 16.318 9.899 5.202 2.536 MuHd_095 : 18.330 8.119 3.920 3.661 MuHd_100 : 22.423 10.363 3.830 4.916 MuHd_105 : 22.051 9.441 3.219 5.206 Hmax_075 : 0.087 2.537 -1.479 1.820 Hmax_095 : -4.500 0.500 -4.042 1.490 Hmax_100 : -1.900 3.700 -3.775 1.880 Hmax_105 : 3.033 0.700 -2.235 3.092 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9846 0.0154 DFMC : 0.9902 0.0098
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 308 NCLIV_039040 MPQANIPDWRFANDKGRFSVTSFKGHKLACNVDIKYPDCNKVAILCPGLYATKCHVLLTTIADGLPVNSIRFDFRGNGES 80 EGDEDWSFGGYVDEAKDDLHAVVDACSSYNLEVVCIIGHSRSATTVLLHAAIFDDIPLVVSLAGRYDMRQGLEKHFSSEK 160 FKGFSVLTAGTGMGKQADVLSATLENDKNILKKQGAEVDEKVEFVSPDGRKRVITKKCVLDRLTLDLRQYFSQIKNTKKI 240 LILHGSEDRTVPCEDATQLANALPQNKTKVVIIEKASHSLVDSQAIKTQVVQVIENFIVENGLSCKKA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_039040 10 ANIPDWR|FA 0.169 . NCLIV_039040 15 WRFANDK|GR 0.069 . NCLIV_039040 17 FANDKGR|FS 0.154 . NCLIV_039040 24 FSVTSFK|GH 0.058 . NCLIV_039040 27 TSFKGHK|LA 0.066 . NCLIV_039040 35 ACNVDIK|YP 0.065 . NCLIV_039040 41 KYPDCNK|VA 0.054 . NCLIV_039040 53 PGLYATK|CH 0.050 . NCLIV_039040 71 LPVNSIR|FD 0.117 . NCLIV_039040 75 SIRFDFR|GN 0.184 . NCLIV_039040 96 GYVDEAK|DD 0.068 . NCLIV_039040 121 CIIGHSR|SA 0.191 . NCLIV_039040 145 VVSLAGR|YD 0.107 . NCLIV_039040 149 AGRYDMR|QG 0.085 . NCLIV_039040 154 MRQGLEK|HF 0.073 . NCLIV_039040 160 KHFSSEK|FK 0.070 . NCLIV_039040 162 FSSEKFK|GF 0.100 . NCLIV_039040 175 AGTGMGK|QA 0.064 . NCLIV_039040 188 ATLENDK|NI 0.058 . NCLIV_039040 192 NDKNILK|KQ 0.066 . NCLIV_039040 193 DKNILKK|QG 0.115 . NCLIV_039040 201 GAEVDEK|VE 0.059 . NCLIV_039040 210 FVSPDGR|KR 0.071 . NCLIV_039040 211 VSPDGRK|RV 0.088 . NCLIV_039040 212 SPDGRKR|VI 0.202 . NCLIV_039040 216 RKRVITK|KC 0.063 . NCLIV_039040 217 KRVITKK|CV 0.151 . NCLIV_039040 222 KKCVLDR|LT 0.096 . NCLIV_039040 228 RLTLDLR|QY 0.077 . NCLIV_039040 235 QYFSQIK|NT 0.062 . NCLIV_039040 238 SQIKNTK|KI 0.066 . NCLIV_039040 239 QIKNTKK|IL 0.092 . NCLIV_039040 249 LHGSEDR|TV 0.093 . NCLIV_039040 267 NALPQNK|TK 0.056 . NCLIV_039040 269 LPQNKTK|VV 0.099 . NCLIV_039040 275 KVVIIEK|AS 0.060 . NCLIV_039040 287 VDSQAIK|TQ 0.060 . NCLIV_039040 306 ENGLSCK|KA 0.073 . NCLIV_039040 307 NGLSCKK|A- 0.077 . ____________________________^_________________

  • Fasta :-

    >NCLIV_039040 ATGCCGCAGGCAAACATCCCTGACTGGCGCTTTGCCAATGATAAAGGCAGGTTCTCCGTA ACTTCCTTCAAGGGCCACAAACTGGCCTGCAACGTCGACATAAAATACCCTGACTGCAAC AAAGTCGCGATTCTCTGTCCAGGGCTGTACGCGACCAAATGCCACGTACTTCTGACTACT ATAGCCGACGGGCTACCGGTCAATTCGATTCGTTTCGACTTCCGCGGCAATGGAGAATCT GAAGGCGATGAGGACTGGAGCTTTGGAGGCTATGTGGATGAGGCAAAGGATGACTTGCAC GCAGTTGTCGACGCATGCTCATCGTATAATCTCGAGGTCGTGTGTATAATCGGTCACTCC CGATCGGCGACGACCGTTCTTCTTCACGCTGCAATTTTTGATGATATCCCACTAGTGGTC AGCCTTGCGGGTCGTTACGATATGCGACAAGGCCTAGAAAAACACTTTTCTTCTGAAAAA TTCAAGGGGTTCTCAGTGCTGACTGCCGGTACGGGGATGGGCAAGCAAGCTGACGTTCTG TCAGCCACGCTTGAGAATGACAAAAACATTTTGAAGAAGCAAGGCGCAGAAGTCGACGAA AAAGTCGAATTCGTTTCCCCAGATGGCCGCAAACGCGTCATAACAAAAAAGTGTGTCCTC GACCGTCTCACGCTTGATCTCCGACAGTATTTCTCGCAGATCAAAAATACGAAAAAGATT CTAATCCTCCACGGCTCTGAAGATCGTACTGTGCCTTGTGAAGACGCTACACAACTGGCT AACGCCCTTCCACAGAACAAGACCAAAGTTGTGATTATCGAAAAGGCATCCCATTCCCTC GTGGACAGTCAGGCGATCAAGACCCAGGTCGTCCAGGTCATCGAAAACTTCATAGTCGAA AACGGCCTCAGTTGCAAGAAGGCTTAA
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  • Fasta :-

    MPQANIPDWRFANDKGRFSVTSFKGHKLACNVDIKYPDCNKVAILCPGLYATKCHVLLTT IADGLPVNSIRFDFRGNGESEGDEDWSFGGYVDEAKDDLHAVVDACSSYNLEVVCIIGHS RSATTVLLHAAIFDDIPLVVSLAGRYDMRQGLEKHFSSEKFKGFSVLTAGTGMGKQADVL SATLENDKNILKKQGAEVDEKVEFVSPDGRKRVITKKCVLDRLTLDLRQYFSQIKNTKKI LILHGSEDRTVPCEDATQLANALPQNKTKVVIIEKASHSLVDSQAIKTQVVQVIENFIVE NGLSCKKA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_03904080 SGNGESEGDE0.995unspNCLIV_03904080 SGNGESEGDE0.995unspNCLIV_03904080 SGNGESEGDE0.995unspNCLIV_039040279 SKASHSLVDS0.993unspNCLIV_03904019 SKGRFSVTSF0.995unspNCLIV_03904022 SFSVTSFKGH0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India