NCLIV_042030 | putative ATP-dependent heat shock protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_042030OTHER0.9855340.0007690.013697
No Results

  • Fasta :-

    >NCLIV_042030 MERGRSRLLSAYPFSCSVPTPSFASSLPSFVPASASSPRFYASSAPPGSFAAPPPRPSSA RASSAAAQTASLDAAAKALCPQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERL REDITPKNILLIGPTGVGKTEVARRLAKRIDAPFIKVEATKFTEVGFHGRDVDQIIKDLV EVAVKTQRTKLQEAMRPAAEHRAETKILEALLGKMPAEEHQQWLRHLRCGALDSRRVHVD FPARPNVGAASGGPAFDDGGRDSIVADLESIIRDIDRPRPAFFATRRGPRGSEARNLTVK EAREKLMQAELDAMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGV QRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSELLAELQGRLPIRVTLTSLTE SDLRDILTKTQNNLIEQNTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHT IIEKIMEDINYAAPSMAPGTRVEIDLERVRSSVSSLLTKMDYTRFVL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_042030.fa Sequence name : NCLIV_042030 Sequence length : 527 VALUES OF COMPUTED PARAMETERS Coef20 : 4.429 CoefTot : 1.162 ChDiff : 1 ZoneTo : 72 KR : 6 DE : 1 CleavSite : 63 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.429 1.124 0.168 0.455 MesoH : 0.285 0.198 -0.135 0.179 MuHd_075 : 25.574 15.071 5.101 6.121 MuHd_095 : 21.060 15.978 5.428 4.679 MuHd_100 : 20.875 15.920 4.472 5.633 MuHd_105 : 24.804 17.676 5.299 6.182 Hmax_075 : 8.700 15.000 -0.133 5.940 Hmax_095 : 7.400 13.900 0.379 2.179 Hmax_100 : 14.800 13.000 1.895 5.160 Hmax_105 : 10.733 13.800 0.145 4.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5594 0.4406 DFMC : 0.1415 0.8585 This protein is probably imported in chloroplast. f(Ser) = 0.2639 f(Arg) = 0.0833 CMi = 1.41369 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 527 NCLIV_042030 MERGRSRLLSAYPFSCSVPTPSFASSLPSFVPASASSPRFYASSAPPGSFAAPPPRPSSARASSAAAQTASLDAAAKALC 80 PQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVARRLAKRIDAPFIKVEAT 160 KFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEAMRPAAEHRAETKILEALLGKMPAEEHQQWLRHLRCGALDSRRVHVD 240 FPARPNVGAASGGPAFDDGGRDSIVADLESIIRDIDRPRPAFFATRRGPRGSEARNLTVKEAREKLMQAELDAMITKDLV 320 VQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSE 400 LLAELQGRLPIRVTLTSLTESDLRDILTKTQNNLIEQNTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHT 480 IIEKIMEDINYAAPSMAPGTRVEIDLERVRSSVSSLLTKMDYTRFVL 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_042030 3 ----MER|GR 0.091 . NCLIV_042030 5 --MERGR|SR 0.085 . NCLIV_042030 7 MERGRSR|LL 0.115 . NCLIV_042030 39 ASASSPR|FY 0.117 . NCLIV_042030 56 FAAPPPR|PS 0.101 . NCLIV_042030 61 PRPSSAR|AS 0.172 . NCLIV_042030 77 SLDAAAK|AL 0.086 . NCLIV_042030 90 MVEYLNK|YI 0.068 . NCLIV_042030 99 IGQAEAK|RA 0.069 . NCLIV_042030 100 GQAEAKR|AV 0.319 . NCLIV_042030 107 AVAVALR|QR 0.076 . NCLIV_042030 109 AVALRQR|WR 0.082 . NCLIV_042030 111 ALRQRWR|RR 0.083 . NCLIV_042030 112 LRQRWRR|RH 0.486 . NCLIV_042030 113 RQRWRRR|HI 0.310 . NCLIV_042030 119 RHIEDER|LR 0.079 . NCLIV_042030 121 IEDERLR|ED 0.067 . NCLIV_042030 127 REDITPK|NI 0.069 . NCLIV_042030 139 GPTGVGK|TE 0.058 . NCLIV_042030 144 GKTEVAR|RL 0.090 . NCLIV_042030 145 KTEVARR|LA 0.144 . NCLIV_042030 148 VARRLAK|RI 0.146 . NCLIV_042030 149 ARRLAKR|ID 0.220 . NCLIV_042030 156 IDAPFIK|VE 0.062 . NCLIV_042030 161 IKVEATK|FT 0.100 . NCLIV_042030 170 EVGFHGR|DV 0.295 . NCLIV_042030 177 DVDQIIK|DL 0.057 . NCLIV_042030 185 LVEVAVK|TQ 0.059 . NCLIV_042030 188 VAVKTQR|TK 0.076 . NCLIV_042030 190 VKTQRTK|LQ 0.066 . NCLIV_042030 196 KLQEAMR|PA 0.106 . NCLIV_042030 202 RPAAEHR|AE 0.138 . NCLIV_042030 206 EHRAETK|IL 0.079 . NCLIV_042030 214 LEALLGK|MP 0.060 . NCLIV_042030 225 EHQQWLR|HL 0.090 . NCLIV_042030 228 QWLRHLR|CG 0.136 . NCLIV_042030 235 CGALDSR|RV 0.096 . NCLIV_042030 236 GALDSRR|VH 0.091 . NCLIV_042030 244 HVDFPAR|PN 0.083 . NCLIV_042030 261 AFDDGGR|DS 0.083 . NCLIV_042030 273 DLESIIR|DI 0.100 . NCLIV_042030 277 IIRDIDR|PR 0.086 . NCLIV_042030 279 RDIDRPR|PA 0.105 . NCLIV_042030 286 PAFFATR|RG 0.070 . NCLIV_042030 287 AFFATRR|GP 0.147 . NCLIV_042030 290 ATRRGPR|GS 0.319 . NCLIV_042030 295 PRGSEAR|NL 0.137 . NCLIV_042030 300 ARNLTVK|EA 0.092 . NCLIV_042030 303 LTVKEAR|EK 0.084 . NCLIV_042030 305 VKEAREK|LM 0.066 . NCLIV_042030 317 LDAMITK|DL 0.074 . NCLIV_042030 323 KDLVVQK|AL 0.091 . NCLIV_042030 341 FIDEIDK|IC 0.067 . NCLIV_042030 345 IDKICSK|GG 0.059 . NCLIV_042030 348 ICSKGGR|SG 0.115 . NCLIV_042030 362 SDEGVQR|DL 0.110 . NCLIV_042030 376 GTTVSTR|YG 0.106 . NCLIV_042030 381 TRYGDVK|TD 0.072 . NCLIV_042030 397 GAFHCVR|PS 0.081 . NCLIV_042030 408 LAELQGR|LP 0.086 . NCLIV_042030 412 QGRLPIR|VT 0.101 . NCLIV_042030 424 LTESDLR|DI 0.086 . NCLIV_042030 429 LRDILTK|TQ 0.065 . NCLIV_042030 443 QNTALLR|TE 0.076 . NCLIV_042030 461 AVNEIAR|VA 0.124 . NCLIV_042030 476 VENIGAR|RL 0.106 . NCLIV_042030 477 ENIGARR|LH 0.123 . NCLIV_042030 484 LHTIIEK|IM 0.063 . NCLIV_042030 501 SMAPGTR|VE 0.097 . NCLIV_042030 508 VEIDLER|VR 0.068 . NCLIV_042030 510 IDLERVR|SS 0.097 . NCLIV_042030 519 VSSLLTK|MD 0.066 . NCLIV_042030 524 TKMDYTR|FV 0.141 . ____________________________^_________________

  • Fasta :-

    >NCLIV_042030 ATGGAGAGAGGCCGTTCGCGTCTTCTCTCTGCTTACCCCTTTTCTTGCTCCGTCCCCACG CCTTCTTTCGCCTCTTCGTTGCCGTCGTTTGTTCCTGCTTCTGCCTCGTCCCCGCGGTTC TACGCGTCTTCTGCGCCTCCTGGTTCCTTCGCAGCCCCACCGCCTCGCCCCTCTTCGGCG CGGGCTTCGAGTGCAGCCGCACAGACTGCCTCTCTGGATGCCGCTGCCAAGGCCCTCTGT CCCCAGGAAATGGTCGAGTACCTCAACAAATACATCATCGGCCAGGCTGAAGCGAAACGA GCCGTCGCCGTCGCTCTCCGACAGCGCTGGAGACGCCGACACATTGAAGACGAGAGACTG CGAGAAGACATCACGCCGAAAAACATTCTTCTCATCGGCCCCACAGGAGTGGGAAAGACG GAAGTCGCTCGGCGGCTGGCCAAGCGCATTGACGCTCCTTTCATTAAGGTGGAAGCCACG AAATTCACCGAAGTTGGGTTCCACGGGCGAGATGTGGACCAAATCATCAAAGATCTCGTG GAAGTGGCGGTGAAGACCCAACGCACAAAGCTGCAAGAGGCGATGCGGCCAGCCGCCGAG CACCGCGCGGAGACGAAAATCCTCGAAGCTCTTCTGGGCAAAATGCCTGCTGAGGAGCAC CAGCAGTGGCTGCGTCATCTCCGGTGCGGCGCACTCGACTCGCGGCGCGTGCATGTGGAC TTTCCAGCGCGACCGAACGTCGGAGCGGCCTCGGGTGGCCCGGCCTTCGACGACGGGGGC CGAGACTCGATTGTGGCAGACTTGGAGAGCATCATTCGAGACATCGACAGGCCCCGTCCC GCCTTCTTTGCAACTCGTCGAGGCCCTCGCGGCTCGGAAGCACGCAACCTGACGGTGAAG GAGGCGCGGGAGAAACTGATGCAGGCCGAGCTAGACGCCATGATCACAAAAGACCTCGTC GTTCAGAAGGCGCTCGAGGCAGTGGAACAAGAAGGCATCGTCTTCATCGATGAAATCGAC AAAATCTGCAGCAAGGGCGGGCGCAGTGGGTACAACCCCGACGCCTCGGACGAAGGCGTC CAGCGCGACTTGCTGCCTTTGATTGAAGGGACGACCGTCAGCACGCGATACGGAGATGTG AAGACGGACTACATTCTCTTCATTGCCTCGGGCGCGTTCCACTGCGTGAGGCCGAGCGAG TTGCTGGCGGAGCTGCAGGGGAGGCTTCCGATTCGAGTCACGCTCACGTCGCTGACGGAA AGCGATTTGCGAGACATTTTGACCAAGACGCAGAACAACTTGATTGAGCAAAATACAGCG CTCCTGCGAACCGAGAACGTGGAGCTGCACTTCACAGAGGAGGCAGTCAACGAGATAGCC CGAGTTGCCTGCGAGGTCAACGCGAGTGTCGAGAACATCGGCGCCCGCCGTCTACACACC ATCATTGAAAAAATCATGGAAGACATCAACTACGCAGCGCCGTCGATGGCTCCTGGAACG CGAGTGGAAATTGACCTGGAACGTGTGCGGAGTAGCGTGAGCTCGCTCCTCACCAAGATG GACTACACGCGGTTCGTGCTGTGA
  • Download Fasta

  • Fasta :-

    MERGRSRLLSAYPFSCSVPTPSFASSLPSFVPASASSPRFYASSAPPGSFAAPPPRPSSA RASSAAAQTASLDAAAKALCPQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERL REDITPKNILLIGPTGVGKTEVARRLAKRIDAPFIKVEATKFTEVGFHGRDVDQIIKDLV EVAVKTQRTKLQEAMRPAAEHRAETKILEALLGKMPAEEHQQWLRHLRCGALDSRRVHVD FPARPNVGAASGGPAFDDGGRDSIVADLESIIRDIDRPRPAFFATRRGPRGSEARNLTVK EAREKLMQAELDAMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGV QRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSELLAELQGRLPIRVTLTSLTE SDLRDILTKTQNNLIEQNTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHT IIEKIMEDINYAAPSMAPGTRVEIDLERVRSSVSSLLTKMDYTRFVL

  • title: ATP binding site
  • coordinates: P134,T135,G136,V137,G138,K139,T140,E141
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_042030417 SVTLTSLTES0.993unspNCLIV_042030417 SVTLTSLTES0.993unspNCLIV_042030417 SVTLTSLTES0.993unspNCLIV_042030512 SRVRSSVSSL0.992unspNCLIV_04203059 SPRPSSARAS0.994unspNCLIV_042030349 SKGGRSGYNP0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India