NCLIV_043950 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_043950OTHER0.9999940.0000000.000006
No Results

  • Fasta :-

    >NCLIV_043950 MPSQLKREAGEEEMAEATTASGSANDSAPAAPKTKEDAVKEEDVQEEEEEDEGEEGGAAA GDKKKKKKKKKKASASAAGEKGANVCPPGPAAVAAAKKQSEENTAVLRRLKEWTSFPEKQ TWPPTKPMHEVFSDGLYPPGEVRETKRRTAAEDREAVRLEAVDIQAIRQAAECHRQVRRY IQGIARPGIKLIDLCQSLEAKSKELIAAHKLDRGWGFPTGCSLNHCAAHYTPNPGDNRVF EQGDICKLDFGVQVGGRIIDCAFSIAFDEKFDNLIQATQDGTNVGISHAGADARLSEIGG YIQEAIESYEMEIDGKMVPIKSIRNLTGHSIDLYRIHAGKSVPIVKTPGAQTSNAPSNIM EEGEVYAIETFASTGRGQVSEEGDCSHYMKDAHAQFAALRLKSAKDLLKAIDQNFGTLAF CRRWLEDLGCTHHLLALKQLVEKQIVCPYPPLSDVRGSFTSQMEHTVFIGRQSVEVVSRG DDF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_043950.fa Sequence name : NCLIV_043950 Sequence length : 483 VALUES OF COMPUTED PARAMETERS Coef20 : 3.407 CoefTot : -0.152 ChDiff : -12 ZoneTo : 7 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 1.182 0.061 0.432 MesoH : -1.002 0.099 -0.453 0.164 MuHd_075 : 39.115 19.631 9.587 6.373 MuHd_095 : 19.170 9.763 4.537 4.110 MuHd_100 : 5.033 3.841 1.738 2.590 MuHd_105 : 7.914 5.397 1.160 2.686 Hmax_075 : 16.100 12.600 1.854 4.783 Hmax_095 : -5.950 -0.088 -3.881 1.173 Hmax_100 : -10.600 -1.200 -4.830 0.760 Hmax_105 : -7.200 0.700 -4.042 1.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8507 0.1493 DFMC : 0.8810 0.1190
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 483 NCLIV_043950 MPSQLKREAGEEEMAEATTASGSANDSAPAAPKTKEDAVKEEDVQEEEEEDEGEEGGAAAGDKKKKKKKKKKASASAAGE 80 KGANVCPPGPAAVAAAKKQSEENTAVLRRLKEWTSFPEKQTWPPTKPMHEVFSDGLYPPGEVRETKRRTAAEDREAVRLE 160 AVDIQAIRQAAECHRQVRRYIQGIARPGIKLIDLCQSLEAKSKELIAAHKLDRGWGFPTGCSLNHCAAHYTPNPGDNRVF 240 EQGDICKLDFGVQVGGRIIDCAFSIAFDEKFDNLIQATQDGTNVGISHAGADARLSEIGGYIQEAIESYEMEIDGKMVPI 320 KSIRNLTGHSIDLYRIHAGKSVPIVKTPGAQTSNAPSNIMEEGEVYAIETFASTGRGQVSEEGDCSHYMKDAHAQFAALR 400 LKSAKDLLKAIDQNFGTLAFCRRWLEDLGCTHHLLALKQLVEKQIVCPYPPLSDVRGSFTSQMEHTVFIGRQSVEVVSRG 480 DDF 560 ......P......................................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_043950 6 -MPSQLK|RE 0.056 . NCLIV_043950 7 MPSQLKR|EA 0.594 *ProP* NCLIV_043950 33 SAPAAPK|TK 0.074 . NCLIV_043950 35 PAAPKTK|ED 0.071 . NCLIV_043950 40 TKEDAVK|EE 0.079 . NCLIV_043950 63 GAAAGDK|KK 0.061 . NCLIV_043950 64 AAAGDKK|KK 0.089 . NCLIV_043950 65 AAGDKKK|KK 0.112 . NCLIV_043950 66 AGDKKKK|KK 0.111 . NCLIV_043950 67 GDKKKKK|KK 0.135 . NCLIV_043950 68 DKKKKKK|KK 0.132 . NCLIV_043950 69 KKKKKKK|KK 0.149 . NCLIV_043950 70 KKKKKKK|KK 0.122 . NCLIV_043950 71 KKKKKKK|KA 0.259 . NCLIV_043950 72 KKKKKKK|AS 0.144 . NCLIV_043950 81 ASAAGEK|GA 0.081 . NCLIV_043950 97 AAVAAAK|KQ 0.069 . NCLIV_043950 98 AVAAAKK|QS 0.114 . NCLIV_043950 108 ENTAVLR|RL 0.070 . NCLIV_043950 109 NTAVLRR|LK 0.118 . NCLIV_043950 111 AVLRRLK|EW 0.086 . NCLIV_043950 119 WTSFPEK|QT 0.071 . NCLIV_043950 126 QTWPPTK|PM 0.078 . NCLIV_043950 143 YPPGEVR|ET 0.076 . NCLIV_043950 146 GEVRETK|RR 0.154 . NCLIV_043950 147 EVRETKR|RT 0.176 . NCLIV_043950 148 VRETKRR|TA 0.174 . NCLIV_043950 154 RTAAEDR|EA 0.099 . NCLIV_043950 158 EDREAVR|LE 0.072 . NCLIV_043950 168 VDIQAIR|QA 0.099 . NCLIV_043950 175 QAAECHR|QV 0.132 . NCLIV_043950 178 ECHRQVR|RY 0.336 . NCLIV_043950 179 CHRQVRR|YI 0.217 . NCLIV_043950 186 YIQGIAR|PG 0.084 . NCLIV_043950 190 IARPGIK|LI 0.065 . NCLIV_043950 201 CQSLEAK|SK 0.093 . NCLIV_043950 203 SLEAKSK|EL 0.071 . NCLIV_043950 210 ELIAAHK|LD 0.060 . NCLIV_043950 213 AAHKLDR|GW 0.114 . NCLIV_043950 238 PNPGDNR|VF 0.087 . NCLIV_043950 247 EQGDICK|LD 0.066 . NCLIV_043950 257 GVQVGGR|II 0.106 . NCLIV_043950 270 SIAFDEK|FD 0.079 . NCLIV_043950 294 HAGADAR|LS 0.121 . NCLIV_043950 316 EMEIDGK|MV 0.063 . NCLIV_043950 321 GKMVPIK|SI 0.111 . NCLIV_043950 324 VPIKSIR|NL 0.095 . NCLIV_043950 335 HSIDLYR|IH 0.075 . NCLIV_043950 340 YRIHAGK|SV 0.118 . NCLIV_043950 346 KSVPIVK|TP 0.071 . NCLIV_043950 376 TFASTGR|GQ 0.095 . NCLIV_043950 390 DCSHYMK|DA 0.152 . NCLIV_043950 400 AQFAALR|LK 0.081 . NCLIV_043950 402 FAALRLK|SA 0.101 . NCLIV_043950 405 LRLKSAK|DL 0.106 . NCLIV_043950 409 SAKDLLK|AI 0.083 . NCLIV_043950 422 GTLAFCR|RW 0.080 . NCLIV_043950 423 TLAFCRR|WL 0.247 . NCLIV_043950 438 HHLLALK|QL 0.057 . NCLIV_043950 443 LKQLVEK|QI 0.061 . NCLIV_043950 456 PPLSDVR|GS 0.102 . NCLIV_043950 471 HTVFIGR|QS 0.079 . NCLIV_043950 479 SVEVVSR|GD 0.101 . ____________________________^_________________

  • Fasta :-

    >NCLIV_043950 ATGCCCTCTCAACTTAAGAGAGAAGCCGGGGAAGAAGAGATGGCCGAGGCCACCACGGCT TCTGGCTCTGCGAACGACTCGGCCCCGGCGGCTCCCAAGACGAAGGAAGACGCCGTAAAG GAAGAGGACGTGCAAGAAGAGGAGGAAGAAGACGAAGGCGAAGAAGGCGGAGCTGCGGCT GGAGACAAGAAAAAGAAGAAAAAGAAAAAGAAGAAGGCATCTGCTTCTGCCGCAGGAGAA AAGGGGGCGAACGTCTGCCCACCCGGACCCGCGGCGGTCGCTGCCGCTAAGAAACAATCA GAGGAGAACACGGCAGTCCTGCGCCGCCTGAAAGAGTGGACTTCTTTCCCCGAAAAACAG ACATGGCCTCCGACAAAGCCCATGCATGAAGTCTTCTCCGACGGCTTGTATCCTCCAGGC GAAGTCCGAGAAACCAAACGGAGGACTGCGGCGGAAGACCGCGAGGCAGTGCGCTTGGAA GCTGTCGACATCCAAGCCATCCGCCAGGCCGCCGAGTGTCATCGTCAGGTTCGGCGGTAT ATCCAGGGCATTGCGCGACCTGGAATAAAGTTGATAGACTTGTGCCAGTCTCTGGAGGCG AAGTCAAAGGAACTGATTGCTGCGCATAAGCTGGACCGAGGCTGGGGATTTCCCACGGGT TGCTCCCTCAACCACTGCGCAGCTCACTATACACCGAATCCTGGAGACAACCGGGTGTTT GAGCAAGGCGACATTTGCAAGTTGGATTTCGGCGTACAGGTTGGCGGCCGGATTATCGAC TGCGCGTTCTCGATTGCCTTCGACGAGAAATTCGACAATCTCATTCAAGCAACGCAGGAT GGAACAAACGTTGGTATTTCTCACGCCGGCGCAGATGCGCGCCTCTCCGAGATTGGCGGC TACATCCAAGAAGCGATCGAAAGCTATGAAATGGAGATTGACGGCAAGATGGTCCCAATC AAATCCATTCGCAACCTCACAGGACACTCCATCGACCTCTACAGAATCCATGCTGGAAAG TCTGTTCCGATTGTAAAGACGCCGGGTGCGCAGACGAGCAACGCTCCTTCGAACATCATG GAGGAAGGCGAAGTTTACGCGATTGAAACGTTTGCTTCGACTGGTCGCGGCCAAGTGTCC GAGGAGGGGGATTGCTCGCACTACATGAAAGACGCCCACGCGCAGTTTGCAGCCTTGCGT CTGAAGAGTGCGAAAGACCTCCTCAAAGCGATTGACCAAAATTTCGGAACGTTGGCGTTC TGTCGGCGATGGCTTGAGGACCTCGGCTGTACGCACCATCTCCTCGCTCTGAAGCAACTC GTGGAAAAACAGATCGTGTGTCCCTATCCGCCGCTCAGCGACGTCAGAGGCTCTTTCACT TCCCAGATGGAACACACCGTCTTCATCGGTCGCCAGTCTGTGGAGGTTGTGTCGCGAGGA GACGATTTCTGA
  • Download Fasta

  • Fasta :-

    MPSQLKREAGEEEMAEATTASGSANDSAPAAPKTKEDAVKEEDVQEEEEEDEGEEGGAAA GDKKKKKKKKKKASASAAGEKGANVCPPGPAAVAAAKKQSEENTAVLRRLKEWTSFPEKQ TWPPTKPMHEVFSDGLYPPGEVRETKRRTAAEDREAVRLEAVDIQAIRQAAECHRQVRRY IQGIARPGIKLIDLCQSLEAKSKELIAAHKLDRGWGFPTGCSLNHCAAHYTPNPGDNRVF EQGDICKLDFGVQVGGRIIDCAFSIAFDEKFDNLIQATQDGTNVGISHAGADARLSEIGG YIQEAIESYEMEIDGKMVPIKSIRNLTGHSIDLYRIHAGKSVPIVKTPGAQTSNAPSNIM EEGEVYAIETFASTGRGQVSEEGDCSHYMKDAHAQFAALRLKSAKDLLKAIDQNFGTLAF CRRWLEDLGCTHHLLALKQLVEKQIVCPYPPLSDVRGSFTSQMEHTVFIGRQSVEVVSRG DDF

  • title: active site
  • coordinates: H229,D249,D260,H329,E369,E464
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_043950380 SRGQVSEEGD0.991unspNCLIV_043950380 SRGQVSEEGD0.991unspNCLIV_043950380 SRGQVSEEGD0.991unspNCLIV_043950403 SLRLKSAKDL0.997unspNCLIV_043950478 SVEVVSRGDD0.996unspNCLIV_043950100 SAKKQSEENT0.993unspNCLIV_043950145 TEVRETKRRT0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India