NCLIV_048430 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003860      

  • Computed_GO_Functions:  3-hydroxyisobutyryl-CoA hydrolase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_048430OTHER0.5760430.0036460.420311
No Results

  • Fasta :-

    >NCLIV_048430 MASGASRRLLRLSAHLSDGVLTQGFSSPLPAFLAPRPASRLPSGVSTSPAVFPLSSSEMK KPDGGSGDSASSLPPCRAFSSLPGPAAFWGEELQLQFSDELHASGCLSISLNRPKQLNAL SCNMITALHALLPRAAEDPRVSLLVLSGQGDRAFCAGGDIRQIASASAADVDRLFGHEYA LVFNFSKFKKPAVALWDGIVMGGGVGISIFASHRLCTESTLWAMPETAIGFFPDVAATFF LPRLKAAPGVGFFLGLVGKRLRAADLLATGLATHFVPRARLEALEEKLKTVGLLSGSYRE IEGFLSPEAARAEVDRLVGEVSEPLPSSSSLCTLTPEVLEGCRKYFSVLPNSYQALVASL AAGAAQGCSFAAEVRKTLLEKCPLSCAVWFALFQRAEARKQSGEGEGDAAPFYAQREEGD TLLDVLRQDFVLAEAFCYGYPENFKEGVRAVLVDKDNRPRWTPSSSADLQAEDVERMLTY GEANALDRFLH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_048430.fa Sequence name : NCLIV_048430 Sequence length : 491 VALUES OF COMPUTED PARAMETERS Coef20 : 4.598 CoefTot : 0.813 ChDiff : -6 ZoneTo : 57 KR : 5 DE : 1 CleavSite : 42 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.429 1.553 0.255 0.711 MesoH : 0.505 0.879 -0.089 0.430 MuHd_075 : 25.450 20.131 5.690 6.902 MuHd_095 : 45.250 26.742 12.107 9.666 MuHd_100 : 47.278 27.002 11.783 9.555 MuHd_105 : 45.868 23.868 10.937 8.906 Hmax_075 : 11.000 20.533 1.737 4.620 Hmax_095 : 14.000 17.150 2.743 4.917 Hmax_100 : 14.200 16.200 2.898 5.320 Hmax_105 : 13.533 14.000 2.540 4.923 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0223 0.9777 DFMC : 0.0303 0.9697 This protein is probably imported in chloroplast. f(Ser) = 0.2281 f(Arg) = 0.0877 CMi = 1.18289 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 491 NCLIV_048430 MASGASRRLLRLSAHLSDGVLTQGFSSPLPAFLAPRPASRLPSGVSTSPAVFPLSSSEMKKPDGGSGDSASSLPPCRAFS 80 SLPGPAAFWGEELQLQFSDELHASGCLSISLNRPKQLNALSCNMITALHALLPRAAEDPRVSLLVLSGQGDRAFCAGGDI 160 RQIASASAADVDRLFGHEYALVFNFSKFKKPAVALWDGIVMGGGVGISIFASHRLCTESTLWAMPETAIGFFPDVAATFF 240 LPRLKAAPGVGFFLGLVGKRLRAADLLATGLATHFVPRARLEALEEKLKTVGLLSGSYREIEGFLSPEAARAEVDRLVGE 320 VSEPLPSSSSLCTLTPEVLEGCRKYFSVLPNSYQALVASLAAGAAQGCSFAAEVRKTLLEKCPLSCAVWFALFQRAEARK 400 QSGEGEGDAAPFYAQREEGDTLLDVLRQDFVLAEAFCYGYPENFKEGVRAVLVDKDNRPRWTPSSSADLQAEDVERMLTY 480 GEANALDRFLH 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_048430 7 MASGASR|RL 0.078 . NCLIV_048430 8 ASGASRR|LL 0.142 . NCLIV_048430 11 ASRRLLR|LS 0.229 . NCLIV_048430 36 PAFLAPR|PA 0.108 . NCLIV_048430 40 APRPASR|LP 0.096 . NCLIV_048430 60 LSSSEMK|KP 0.077 . NCLIV_048430 61 SSSEMKK|PD 0.214 . NCLIV_048430 77 SSLPPCR|AF 0.086 . NCLIV_048430 113 LSISLNR|PK 0.067 . NCLIV_048430 115 ISLNRPK|QL 0.067 . NCLIV_048430 134 LHALLPR|AA 0.127 . NCLIV_048430 140 RAAEDPR|VS 0.082 . NCLIV_048430 152 LSGQGDR|AF 0.101 . NCLIV_048430 161 CAGGDIR|QI 0.082 . NCLIV_048430 173 SAADVDR|LF 0.114 . NCLIV_048430 187 LVFNFSK|FK 0.065 . NCLIV_048430 189 FNFSKFK|KP 0.063 . NCLIV_048430 190 NFSKFKK|PA 0.158 . NCLIV_048430 214 SIFASHR|LC 0.082 . NCLIV_048430 243 ATFFLPR|LK 0.082 . NCLIV_048430 245 FFLPRLK|AA 0.064 . NCLIV_048430 259 FLGLVGK|RL 0.064 . NCLIV_048430 260 LGLVGKR|LR 0.102 . NCLIV_048430 262 LVGKRLR|AA 0.095 . NCLIV_048430 278 ATHFVPR|AR 0.101 . NCLIV_048430 280 HFVPRAR|LE 0.081 . NCLIV_048430 287 LEALEEK|LK 0.065 . NCLIV_048430 289 ALEEKLK|TV 0.068 . NCLIV_048430 299 LLSGSYR|EI 0.153 . NCLIV_048430 311 LSPEAAR|AE 0.088 . NCLIV_048430 316 ARAEVDR|LV 0.190 . NCLIV_048430 343 EVLEGCR|KY 0.075 . NCLIV_048430 344 VLEGCRK|YF 0.085 . NCLIV_048430 375 SFAAEVR|KT 0.071 . NCLIV_048430 376 FAAEVRK|TL 0.082 . NCLIV_048430 381 RKTLLEK|CP 0.058 . NCLIV_048430 395 WFALFQR|AE 0.091 . NCLIV_048430 399 FQRAEAR|KQ 0.119 . NCLIV_048430 400 QRAEARK|QS 0.173 . NCLIV_048430 416 APFYAQR|EE 0.102 . NCLIV_048430 427 TLLDVLR|QD 0.082 . NCLIV_048430 445 GYPENFK|EG 0.053 . NCLIV_048430 449 NFKEGVR|AV 0.078 . NCLIV_048430 455 RAVLVDK|DN 0.066 . NCLIV_048430 458 LVDKDNR|PR 0.065 . NCLIV_048430 460 DKDNRPR|WT 0.080 . NCLIV_048430 476 QAEDVER|ML 0.113 . NCLIV_048430 488 EANALDR|FL 0.114 . ____________________________^_________________

  • Fasta :-

    >NCLIV_048430 ATGGCAAGCGGAGCGTCGCGGCGTCTTCTCCGCCTGAGTGCACACCTCAGCGACGGCGTT CTGACGCAAGGCTTCTCTTCACCTCTCCCAGCCTTCCTCGCTCCCCGCCCTGCTTCTCGG CTCCCCTCGGGGGTTTCTACTTCCCCTGCGGTTTTCCCCCTGTCCTCATCGGAGATGAAG AAACCCGATGGAGGAAGCGGCGACTCCGCCTCCTCGCTGCCGCCGTGTCGCGCCTTCTCT TCGCTTCCAGGGCCCGCGGCGTTTTGGGGCGAGGAACTCCAGCTGCAGTTTTCAGACGAA CTTCACGCTTCCGGCTGTCTGTCGATCTCTCTGAATCGCCCGAAACAGCTGAATGCGCTG AGTTGCAACATGATCACCGCCTTGCATGCGCTCCTTCCTCGCGCGGCAGAGGATCCGCGC GTGTCCCTTCTGGTGCTCTCGGGCCAGGGGGATCGAGCCTTCTGTGCGGGAGGTGACATC CGGCAAATCGCGAGCGCCTCCGCCGCAGACGTCGACAGATTATTTGGCCACGAATATGCC CTCGTCTTCAACTTTTCAAAATTCAAGAAACCCGCCGTCGCCCTCTGGGACGGTATTGTC ATGGGAGGAGGCGTGGGAATTTCGATTTTCGCCTCCCACCGTCTCTGCACGGAGTCAACT CTGTGGGCGATGCCGGAGACAGCGATCGGATTCTTCCCTGACGTCGCGGCAACTTTCTTT CTGCCGCGGTTGAAGGCAGCCCCAGGCGTGGGATTTTTCCTCGGCCTCGTAGGAAAGCGA CTGCGCGCTGCAGACCTCCTCGCAACAGGCCTTGCCACGCACTTTGTGCCGCGCGCACGG CTCGAGGCGCTGGAAGAGAAGCTGAAAACGGTGGGTTTGCTTTCTGGATCCTACCGCGAG ATCGAAGGTTTCCTCTCCCCCGAAGCAGCGCGCGCCGAAGTCGATCGCCTGGTCGGCGAA GTCTCTGAACCTCTGCCGTCTTCATCTTCTCTCTGCACTTTAACCCCTGAGGTGTTGGAG GGATGCAGGAAGTATTTCTCGGTCTTGCCGAACTCGTATCAGGCCCTAGTCGCCTCGCTG GCTGCCGGCGCTGCTCAGGGGTGCTCCTTCGCGGCGGAGGTGCGCAAGACGCTTCTCGAA AAATGTCCGCTCTCCTGCGCCGTGTGGTTCGCGCTCTTCCAGCGCGCAGAGGCGCGGAAA CAGAGCGGCGAAGGTGAGGGCGACGCGGCGCCGTTCTACGCGCAGCGCGAAGAAGGCGAC ACTCTGTTGGACGTGTTGCGGCAGGATTTCGTCCTCGCCGAAGCCTTCTGCTACGGCTAT CCGGAGAATTTCAAGGAGGGTGTGCGCGCGGTCCTCGTGGACAAAGACAACCGGCCGAGA TGGACCCCGAGCAGCAGCGCGGACCTGCAAGCAGAAGACGTTGAGCGGATGCTCACCTAC GGCGAGGCGAACGCTCTAGACCGTTTCCTGCACTGA
  • Download Fasta

  • Fasta :-

    MASGASRRLLRLSAHLSDGVLTQGFSSPLPAFLAPRPASRLPSGVSTSPAVFPLSSSEMK KPDGGSGDSASSLPPCRAFSSLPGPAAFWGEELQLQFSDELHASGCLSISLNRPKQLNAL SCNMITALHALLPRAAEDPRVSLLVLSGQGDRAFCAGGDIRQIASASAADVDRLFGHEYA LVFNFSKFKKPAVALWDGIVMGGGVGISIFASHRLCTESTLWAMPETAIGFFPDVAATFF LPRLKAAPGVGFFLGLVGKRLRAADLLATGLATHFVPRARLEALEEKLKTVGLLSGSYRE IEGFLSPEAARAEVDRLVGEVSEPLPSSSSLCTLTPEVLEGCRKYFSVLPNSYQALVASL AAGAAQGCSFAAEVRKTLLEKCPLSCAVWFALFQRAEARKQSGEGEGDAAPFYAQREEGD TLLDVLRQDFVLAEAFCYGYPENFKEGVRAVLVDKDNRPRWTPSSSADLQAEDVERMLTY GEANALDRFLH

  • title: substrate binding site
  • coordinates: L117,A119,R152,A156,G157,G158,D159,I160,I199,M201,G202,G203,P225,E226,I229
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_048430402 SARKQSGEGE0.991unspNCLIV_048430402 SARKQSGEGE0.991unspNCLIV_048430402 SARKQSGEGE0.991unspNCLIV_048430297 SLLSGSYREI0.992unspNCLIV_048430306 SEGFLSPEAA0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India