NCLIV_050470 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_050470mTP0.0429460.0000830.956971CS pos: 43-44. SLF-GA. Pr: 0.5697
No Results

  • Fasta :-

    >NCLIV_050470 MFRFLPRAASGASTALSVHRRRIPALASLPASSSSLIQTRSLFGAAAATTAPSGVSPLAR SPDLSIPQEAFNQSPTITTTLPNGIRVATQRLPFHQTATVGVWIDSGSRYDSKETNGAAH FLEHMTFKGTKRRSRIQLEQEIENMGAHLNAYTSREQTVYYAKAFKKDLPQCVDILSDIL LNSTIDEEAVQMEKHVILREMEEVEKQTEEVIFDRLHTTAFRDSPLGYTILGPEENIRNM TRSHILDYINRNYTSDRMVIAAAGDVDHKELTALVEKHFAAVPQPKKNKIILPTEKPFFC GSELLHRNDDMGPHRPCRCRIRRRPVEVPRKADLCLRCAWAFADAVTFMLMQAIVGSYRK HDEGIVPGKVSANTTVRNVCNKMMVGCAEMFSAFNTCYSDTGLFGFYAQCDEVALEHCVM EIMFGITSLSYAVTDEEVERAKAQLKTQLLGHLDSTTAVAEDIGRQMLAYGRRMPLAEFL KRLEVIDAEEVKRVAWKYLHDAEVAVAGLGPLFGMPQLINIRRATFWLRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_050470.fa Sequence name : NCLIV_050470 Sequence length : 530 VALUES OF COMPUTED PARAMETERS Coef20 : 4.833 CoefTot : 2.314 ChDiff : 2 ZoneTo : 62 KR : 7 DE : 0 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.559 0.218 0.617 MesoH : 0.029 0.445 -0.210 0.243 MuHd_075 : 30.130 17.192 5.695 6.458 MuHd_095 : 31.629 18.830 6.897 7.293 MuHd_100 : 32.306 23.124 7.114 8.726 MuHd_105 : 36.490 24.628 8.140 10.145 Hmax_075 : 13.183 16.700 -0.165 3.110 Hmax_095 : 17.500 17.700 2.355 5.900 Hmax_100 : 17.500 17.700 2.610 5.900 Hmax_105 : 15.517 18.433 2.876 5.973 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0202 0.9798 DFMC : 0.0088 0.9912 This protein is probably imported in mitochondria. f(Ser) = 0.1935 f(Arg) = 0.1129 CMi = 0.84866 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 530 NCLIV_050470 MFRFLPRAASGASTALSVHRRRIPALASLPASSSSLIQTRSLFGAAAATTAPSGVSPLARSPDLSIPQEAFNQSPTITTT 80 LPNGIRVATQRLPFHQTATVGVWIDSGSRYDSKETNGAAHFLEHMTFKGTKRRSRIQLEQEIENMGAHLNAYTSREQTVY 160 YAKAFKKDLPQCVDILSDILLNSTIDEEAVQMEKHVILREMEEVEKQTEEVIFDRLHTTAFRDSPLGYTILGPEENIRNM 240 TRSHILDYINRNYTSDRMVIAAAGDVDHKELTALVEKHFAAVPQPKKNKIILPTEKPFFCGSELLHRNDDMGPHRPCRCR 320 IRRRPVEVPRKADLCLRCAWAFADAVTFMLMQAIVGSYRKHDEGIVPGKVSANTTVRNVCNKMMVGCAEMFSAFNTCYSD 400 TGLFGFYAQCDEVALEHCVMEIMFGITSLSYAVTDEEVERAKAQLKTQLLGHLDSTTAVAEDIGRQMLAYGRRMPLAEFL 480 KRLEVIDAEEVKRVAWKYLHDAEVAVAGLGPLFGMPQLINIRRATFWLRY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_050470 3 ----MFR|FL 0.099 . NCLIV_050470 7 MFRFLPR|AA 0.140 . NCLIV_050470 20 TALSVHR|RR 0.096 . NCLIV_050470 21 ALSVHRR|RI 0.172 . NCLIV_050470 22 LSVHRRR|IP 0.091 . NCLIV_050470 40 SSLIQTR|SL 0.159 . NCLIV_050470 60 GVSPLAR|SP 0.238 . NCLIV_050470 86 TLPNGIR|VA 0.096 . NCLIV_050470 91 IRVATQR|LP 0.109 . NCLIV_050470 109 WIDSGSR|YD 0.079 . NCLIV_050470 113 GSRYDSK|ET 0.076 . NCLIV_050470 128 LEHMTFK|GT 0.071 . NCLIV_050470 131 MTFKGTK|RR 0.064 . NCLIV_050470 132 TFKGTKR|RS 0.210 . NCLIV_050470 133 FKGTKRR|SR 0.327 . NCLIV_050470 135 GTKRRSR|IQ 0.236 . NCLIV_050470 155 LNAYTSR|EQ 0.091 . NCLIV_050470 163 QTVYYAK|AF 0.068 . NCLIV_050470 166 YYAKAFK|KD 0.058 . NCLIV_050470 167 YAKAFKK|DL 0.155 . NCLIV_050470 194 EAVQMEK|HV 0.067 . NCLIV_050470 199 EKHVILR|EM 0.141 . NCLIV_050470 206 EMEEVEK|QT 0.068 . NCLIV_050470 215 EEVIFDR|LH 0.087 . NCLIV_050470 222 LHTTAFR|DS 0.085 . NCLIV_050470 238 GPEENIR|NM 0.080 . NCLIV_050470 242 NIRNMTR|SH 0.095 . NCLIV_050470 251 ILDYINR|NY 0.076 . NCLIV_050470 257 RNYTSDR|MV 0.185 . NCLIV_050470 269 AGDVDHK|EL 0.061 . NCLIV_050470 277 LTALVEK|HF 0.063 . NCLIV_050470 286 AAVPQPK|KN 0.084 . NCLIV_050470 287 AVPQPKK|NK 0.073 . NCLIV_050470 289 PQPKKNK|II 0.070 . NCLIV_050470 296 IILPTEK|PF 0.059 . NCLIV_050470 307 GSELLHR|ND 0.091 . NCLIV_050470 315 DDMGPHR|PC 0.077 . NCLIV_050470 318 GPHRPCR|CR 0.297 . NCLIV_050470 320 HRPCRCR|IR 0.084 . NCLIV_050470 322 PCRCRIR|RR 0.077 . NCLIV_050470 323 CRCRIRR|RP 0.359 . NCLIV_050470 324 RCRIRRR|PV 0.248 . NCLIV_050470 330 RPVEVPR|KA 0.122 . NCLIV_050470 331 PVEVPRK|AD 0.067 . NCLIV_050470 337 KADLCLR|CA 0.088 . NCLIV_050470 359 AIVGSYR|KH 0.088 . NCLIV_050470 360 IVGSYRK|HD 0.093 . NCLIV_050470 369 EGIVPGK|VS 0.056 . NCLIV_050470 377 SANTTVR|NV 0.142 . NCLIV_050470 382 VRNVCNK|MM 0.074 . NCLIV_050470 440 TDEEVER|AK 0.097 . NCLIV_050470 442 EEVERAK|AQ 0.059 . NCLIV_050470 446 RAKAQLK|TQ 0.058 . NCLIV_050470 465 VAEDIGR|QM 0.079 . NCLIV_050470 472 QMLAYGR|RM 0.066 . NCLIV_050470 473 MLAYGRR|MP 0.118 . NCLIV_050470 481 PLAEFLK|RL 0.065 . NCLIV_050470 482 LAEFLKR|LE 0.101 . NCLIV_050470 492 IDAEEVK|RV 0.071 . NCLIV_050470 493 DAEEVKR|VA 0.236 . NCLIV_050470 497 VKRVAWK|YL 0.110 . NCLIV_050470 522 PQLINIR|RA 0.073 . NCLIV_050470 523 QLINIRR|AT 0.139 . NCLIV_050470 529 RATFWLR|Y- 0.094 . ____________________________^_________________

  • Fasta :-

    >NCLIV_050470 ATGTTTCGCTTCCTTCCACGGGCTGCCTCCGGCGCCTCGACCGCCCTCAGCGTCCACCGG AGGCGCATCCCTGCTCTCGCTTCTCTCCCCGCTTCCAGCTCTTCTCTTATCCAAACCCGC AGCCTCTTCGGCGCCGCAGCGGCGACGACGGCGCCAAGCGGCGTCAGTCCTCTCGCGCGC TCTCCGGATCTGTCCATTCCGCAGGAAGCGTTCAACCAGTCTCCCACGATCACCACGACT TTGCCGAACGGGATTCGCGTGGCGACGCAGCGCCTCCCCTTTCACCAGACTGCCACCGTC GGTGTGTGGATCGACAGCGGAAGCCGCTACGACAGCAAAGAGACGAACGGCGCTGCGCAC TTCCTCGAGCACATGACTTTCAAGGGGACCAAGAGAAGATCGCGCATCCAACTCGAACAA GAAATCGAAAACATGGGGGCGCACCTCAACGCCTACACCTCTCGCGAACAGACAGTCTAC TACGCGAAGGCCTTCAAGAAAGATCTGCCCCAGTGCGTCGACATCTTGTCGGACATTCTC CTCAACTCCACCATCGACGAGGAGGCTGTCCAGATGGAAAAGCACGTGATCCTCAGAGAA ATGGAGGAGGTGGAAAAACAAACTGAGGAAGTCATCTTCGACCGTCTCCACACCACGGCG TTCCGAGACAGTCCGTTGGGTTACACGATTTTGGGCCCTGAAGAGAACATCCGCAACATG ACTCGAAGTCACATTTTGGATTACATCAACCGGAACTACACGAGCGACAGGATGGTCATT GCGGCTGCAGGCGACGTCGACCACAAAGAGCTGACTGCCTTGGTCGAGAAGCATTTCGCC GCAGTCCCTCAACCGAAAAAGAACAAGATCATCTTGCCCACCGAAAAGCCGTTCTTCTGC GGCTCCGAGCTCCTCCACAGAAACGACGATATGGGCCCCCATCGCCCATGTCGCTGTCGG ATTCGAAGGCGTCCCGTGGAAGTCCCCCGAAAGGCGGATCTTTGCCTCCGTTGTGCGTGG GCCTTCGCAGATGCAGTGACGTTCATGCTCATGCAGGCGATTGTTGGAAGCTACCGGAAG CACGACGAGGGAATCGTCCCGGGAAAGGTCTCGGCCAACACGACTGTGAGGAACGTGTGC AACAAAATGATGGTCGGCTGCGCAGAAATGTTCTCTGCCTTCAACACTTGCTACAGCGAC ACCGGCCTCTTCGGCTTCTACGCCCAGTGTGACGAAGTCGCTCTCGAGCACTGCGTCATG GAAATCATGTTCGGCATCACTTCCCTCTCCTACGCCGTCACTGACGAAGAGGTTGAACGC GCCAAGGCTCAACTGAAAACGCAGCTCTTGGGTCACCTCGATTCGACAACGGCAGTCGCT GAAGACATCGGGCGTCAGATGCTTGCCTATGGACGACGCATGCCTCTCGCTGAGTTCCTC AAGAGGTTGGAGGTGATCGACGCCGAAGAAGTGAAGCGCGTCGCGTGGAAATACCTCCAT GACGCTGAAGTCGCCGTCGCCGGGTTGGGCCCTCTCTTCGGCATGCCGCAACTTATCAAC ATCCGCCGCGCAACCTTCTGGCTGCGGTACTAG
  • Download Fasta

  • Fasta :-

    MFRFLPRAASGASTALSVHRRRIPALASLPASSSSLIQTRSLFGAAAATTAPSGVSPLAR SPDLSIPQEAFNQSPTITTTLPNGIRVATQRLPFHQTATVGVWIDSGSRYDSKETNGAAH FLEHMTFKGTKRRSRIQLEQEIENMGAHLNAYTSREQTVYYAKAFKKDLPQCVDILSDIL LNSTIDEEAVQMEKHVILREMEEVEKQTEEVIFDRLHTTAFRDSPLGYTILGPEENIRNM TRSHILDYINRNYTSDRMVIAAAGDVDHKELTALVEKHFAAVPQPKKNKIILPTEKPFFC GSELLHRNDDMGPHRPCRCRIRRRPVEVPRKADLCLRCAWAFADAVTFMLMQAIVGSYRK HDEGIVPGKVSANTTVRNVCNKMMVGCAEMFSAFNTCYSDTGLFGFYAQCDEVALEHCVM EIMFGITSLSYAVTDEEVERAKAQLKTQLLGHLDSTTAVAEDIGRQMLAYGRRMPLAEFL KRLEVIDAEEVKRVAWKYLHDAEVAVAGLGPLFGMPQLINIRRATFWLRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_050470224 SAFRDSPLGY0.993unspNCLIV_050470224 SAFRDSPLGY0.993unspNCLIV_050470224 SAFRDSPLGY0.993unspNCLIV_050470112 SSRYDSKETN0.996unspNCLIV_050470134 STKRRSRIQL0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India