NCLIV_055070 | Ubiquitin carboxyl-terminal hydrolase, related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_055070OTHER0.9999810.0000100.000009
No Results

  • Fasta :-

    >NCLIV_055070 METMKISVKWNKQEFEDVEVDLGEPLALLNAQLMTLTGVPADRQKLMANRKLLKSVEDLR AAAKGGKSVKVTMLGTAEGGELQQPAEKTVFLEDLTPAQQAQLLREKNIEPLPTGLTNLG NTCYLASVLQMLRPCSELTRAIKSDMRNTTGDSAASYTALSGAAGAVHRLAVALKDFYGQ WESTVGAVQPVLLVHAIREAFPQFARKAPAAPGGLGGGFMQQDAEECFSCLMTVLSDSLP VSQNRKAFEALPARYEKASNFVDALFAFDMRVTTRRERGGTALADAEGDAPAASPEIKRD KNTKFTCFLGTMQNPINTLDEGLKFSLAEERIDLGAASAGSAQTGAAGAGSEAASVTLVR SMQFETLPFYFLVQFMRFEWKRAGGQAEKAKVCRSVKFGPTLDLYMHCTDELKESLRIGR AVVALRREREAGGVKDTQREDEANAGKETSAVAAASDAVMADEKTPASTEPSAAGDSTVY RTGFFQLLGIVTHQGRHADTGHYVGWTKKDQREPRVIEKEKKQKEREEERKREENPSGVA LKKKKAAPVDMWVKFDDDKVTETPWDQIDLAGGRSDYHIAYLLLFREILVDATEEEVQTV EKSHAEQMAQAQAVNKLPNGEEKKAQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_055070.fa Sequence name : NCLIV_055070 Sequence length : 627 VALUES OF COMPUTED PARAMETERS Coef20 : 3.429 CoefTot : 0.000 ChDiff : -9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.112 1.212 0.139 0.496 MesoH : -0.215 0.365 -0.293 0.258 MuHd_075 : 13.481 6.361 2.042 2.545 MuHd_095 : 36.855 16.482 10.269 5.784 MuHd_100 : 36.937 18.671 9.857 5.849 MuHd_105 : 27.210 15.278 6.909 4.522 Hmax_075 : -1.750 1.050 -5.046 2.112 Hmax_095 : 9.300 8.100 -0.185 3.030 Hmax_100 : 11.500 10.700 0.034 3.720 Hmax_105 : 2.887 6.300 -2.107 2.608 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9444 0.0556 DFMC : 0.9258 0.0742
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 627 NCLIV_055070 METMKISVKWNKQEFEDVEVDLGEPLALLNAQLMTLTGVPADRQKLMANRKLLKSVEDLRAAAKGGKSVKVTMLGTAEGG 80 ELQQPAEKTVFLEDLTPAQQAQLLREKNIEPLPTGLTNLGNTCYLASVLQMLRPCSELTRAIKSDMRNTTGDSAASYTAL 160 SGAAGAVHRLAVALKDFYGQWESTVGAVQPVLLVHAIREAFPQFARKAPAAPGGLGGGFMQQDAEECFSCLMTVLSDSLP 240 VSQNRKAFEALPARYEKASNFVDALFAFDMRVTTRRERGGTALADAEGDAPAASPEIKRDKNTKFTCFLGTMQNPINTLD 320 EGLKFSLAEERIDLGAASAGSAQTGAAGAGSEAASVTLVRSMQFETLPFYFLVQFMRFEWKRAGGQAEKAKVCRSVKFGP 400 TLDLYMHCTDELKESLRIGRAVVALRREREAGGVKDTQREDEANAGKETSAVAAASDAVMADEKTPASTEPSAAGDSTVY 480 RTGFFQLLGIVTHQGRHADTGHYVGWTKKDQREPRVIEKEKKQKEREEERKREENPSGVALKKKKAAPVDMWVKFDDDKV 560 TETPWDQIDLAGGRSDYHIAYLLLFREILVDATEEEVQTVEKSHAEQMAQAQAVNKLPNGEEKKAQE 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_055070 5 --METMK|IS 0.062 . NCLIV_055070 9 TMKISVK|WN 0.073 . NCLIV_055070 12 ISVKWNK|QE 0.064 . NCLIV_055070 43 TGVPADR|QK 0.083 . NCLIV_055070 45 VPADRQK|LM 0.058 . NCLIV_055070 50 QKLMANR|KL 0.084 . NCLIV_055070 51 KLMANRK|LL 0.089 . NCLIV_055070 54 ANRKLLK|SV 0.143 . NCLIV_055070 60 KSVEDLR|AA 0.117 . NCLIV_055070 64 DLRAAAK|GG 0.070 . NCLIV_055070 67 AAAKGGK|SV 0.101 . NCLIV_055070 70 KGGKSVK|VT 0.067 . NCLIV_055070 88 LQQPAEK|TV 0.068 . NCLIV_055070 105 QQAQLLR|EK 0.079 . NCLIV_055070 107 AQLLREK|NI 0.065 . NCLIV_055070 133 SVLQMLR|PC 0.072 . NCLIV_055070 140 PCSELTR|AI 0.093 . NCLIV_055070 143 ELTRAIK|SD 0.153 . NCLIV_055070 147 AIKSDMR|NT 0.073 . NCLIV_055070 169 AAGAVHR|LA 0.096 . NCLIV_055070 175 RLAVALK|DF 0.084 . NCLIV_055070 198 LLVHAIR|EA 0.124 . NCLIV_055070 206 AFPQFAR|KA 0.105 . NCLIV_055070 207 FPQFARK|AP 0.083 . NCLIV_055070 245 LPVSQNR|KA 0.137 . NCLIV_055070 246 PVSQNRK|AF 0.098 . NCLIV_055070 254 FEALPAR|YE 0.090 . NCLIV_055070 257 LPARYEK|AS 0.144 . NCLIV_055070 271 LFAFDMR|VT 0.087 . NCLIV_055070 275 DMRVTTR|RE 0.088 . NCLIV_055070 276 MRVTTRR|ER 0.158 . NCLIV_055070 278 VTTRRER|GG 0.169 . NCLIV_055070 298 AASPEIK|RD 0.066 . NCLIV_055070 299 ASPEIKR|DK 0.269 . NCLIV_055070 301 PEIKRDK|NT 0.057 . NCLIV_055070 304 KRDKNTK|FT 0.090 . NCLIV_055070 324 TLDEGLK|FS 0.065 . NCLIV_055070 331 FSLAEER|ID 0.072 . NCLIV_055070 360 ASVTLVR|SM 0.099 . NCLIV_055070 377 FLVQFMR|FE 0.092 . NCLIV_055070 381 FMRFEWK|RA 0.080 . NCLIV_055070 382 MRFEWKR|AG 0.401 . NCLIV_055070 389 AGGQAEK|AK 0.052 . NCLIV_055070 391 GQAEKAK|VC 0.077 . NCLIV_055070 394 EKAKVCR|SV 0.335 . NCLIV_055070 397 KVCRSVK|FG 0.109 . NCLIV_055070 413 HCTDELK|ES 0.057 . NCLIV_055070 417 ELKESLR|IG 0.083 . NCLIV_055070 420 ESLRIGR|AV 0.324 . NCLIV_055070 426 RAVVALR|RE 0.080 . NCLIV_055070 427 AVVALRR|ER 0.113 . NCLIV_055070 429 VALRRER|EA 0.358 . NCLIV_055070 435 REAGGVK|DT 0.067 . NCLIV_055070 439 GVKDTQR|ED 0.091 . NCLIV_055070 447 DEANAGK|ET 0.074 . NCLIV_055070 464 AVMADEK|TP 0.058 . NCLIV_055070 481 GDSTVYR|TG 0.121 . NCLIV_055070 496 IVTHQGR|HA 0.144 . NCLIV_055070 508 HYVGWTK|KD 0.059 . NCLIV_055070 509 YVGWTKK|DQ 0.102 . NCLIV_055070 512 WTKKDQR|EP 0.088 . NCLIV_055070 515 KDQREPR|VI 0.463 . NCLIV_055070 519 EPRVIEK|EK 0.077 . NCLIV_055070 521 RVIEKEK|KQ 0.063 . NCLIV_055070 522 VIEKEKK|QK 0.122 . NCLIV_055070 524 EKEKKQK|ER 0.070 . NCLIV_055070 526 EKKQKER|EE 0.112 . NCLIV_055070 530 KEREEER|KR 0.085 . NCLIV_055070 531 EREEERK|RE 0.072 . NCLIV_055070 532 REEERKR|EE 0.152 . NCLIV_055070 542 PSGVALK|KK 0.071 . NCLIV_055070 543 SGVALKK|KK 0.100 . NCLIV_055070 544 GVALKKK|KA 0.173 . NCLIV_055070 545 VALKKKK|AA 0.107 . NCLIV_055070 554 PVDMWVK|FD 0.066 . NCLIV_055070 559 VKFDDDK|VT 0.064 . NCLIV_055070 574 IDLAGGR|SD 0.089 . NCLIV_055070 586 AYLLLFR|EI 0.066 . NCLIV_055070 602 EVQTVEK|SH 0.080 . NCLIV_055070 616 QAQAVNK|LP 0.065 . NCLIV_055070 623 LPNGEEK|KA 0.084 . NCLIV_055070 624 PNGEEKK|AQ 0.106 . ____________________________^_________________

  • Fasta :-

    >NCLIV_055070 ATGGAGACGATGAAGATCAGCGTGAAATGGAACAAGCAGGAATTCGAGGATGTCGAGGTG GATCTCGGCGAGCCTCTTGCTCTCCTCAACGCCCAGCTCATGACTTTGACGGGGGTGCCC GCGGATCGGCAGAAGCTGATGGCGAACCGCAAGCTGCTCAAGAGCGTGGAGGATCTGCGC GCAGCTGCCAAGGGAGGAAAGAGCGTGAAAGTGACAATGCTCGGAACTGCCGAAGGCGGC GAGTTGCAACAGCCGGCGGAGAAAACGGTCTTCCTCGAGGACCTCACGCCTGCACAGCAA GCCCAGCTGCTGCGAGAAAAAAACATCGAACCTCTGCCCACCGGCCTCACGAATCTGGGA AACACCTGCTATCTGGCGTCAGTCCTGCAGATGCTGAGGCCTTGCAGCGAGCTCACCCGA GCCATCAAAAGCGACATGCGAAACACGACCGGCGATTCTGCCGCCTCATACACGGCTCTC TCAGGCGCCGCCGGAGCTGTACATCGCCTGGCTGTCGCGCTGAAGGATTTTTACGGCCAG TGGGAGTCGACTGTCGGCGCTGTTCAGCCTGTGCTCCTCGTCCATGCCATTCGAGAGGCC TTTCCTCAGTTTGCGAGAAAAGCTCCTGCGGCGCCGGGCGGCCTGGGAGGGGGTTTTATG CAGCAAGATGCAGAGGAGTGCTTCAGCTGTTTGATGACGGTGTTAAGCGACAGCTTGCCG GTGTCGCAGAACCGGAAGGCGTTCGAGGCTCTTCCAGCTCGGTACGAAAAGGCCTCGAAC TTTGTCGATGCTTTGTTTGCCTTCGACATGCGTGTAACTACCCGACGCGAGCGCGGAGGA ACGGCTCTCGCGGACGCCGAGGGCGACGCACCGGCGGCTTCTCCAGAGATAAAGCGGGAC AAAAACACAAAGTTCACCTGCTTCCTAGGCACCATGCAGAACCCGATCAACACCCTCGAC GAGGGCCTCAAGTTCTCCCTCGCAGAAGAGCGCATCGATTTAGGCGCAGCCTCTGCAGGC TCGGCACAGACAGGCGCTGCTGGTGCAGGCTCTGAAGCAGCGAGTGTGACGCTCGTGCGG TCGATGCAGTTCGAGACGCTGCCTTTCTACTTTCTCGTCCAGTTCATGAGGTTCGAATGG AAACGCGCCGGTGGGCAGGCGGAAAAGGCCAAAGTCTGCAGAAGCGTGAAATTCGGGCCG ACCCTCGACCTGTACATGCACTGCACCGATGAGTTGAAGGAGAGCCTTCGCATCGGGCGC GCCGTCGTGGCTCTTCGACGAGAAAGGGAAGCAGGCGGTGTGAAGGACACGCAAAGAGAA GATGAGGCGAATGCGGGCAAAGAGACGAGCGCAGTTGCTGCGGCTTCCGACGCCGTCATG GCTGACGAGAAGACTCCCGCGTCAACTGAGCCGTCGGCTGCAGGTGACAGTACGGTGTAT CGCACGGGGTTTTTCCAGCTGTTGGGGATTGTGACTCACCAAGGCCGGCATGCAGACACT GGGCACTACGTGGGGTGGACGAAGAAAGACCAGCGGGAGCCTCGTGTCATCGAGAAAGAG AAGAAGCAGAAGGAGAGAGAGGAGGAGCGGAAGCGAGAAGAGAACCCGAGTGGAGTGGCC TTGAAGAAGAAGAAGGCCGCACCAGTTGACATGTGGGTCAAATTCGACGACGACAAAGTC ACCGAGACACCGTGGGACCAGATCGACCTGGCTGGCGGACGCAGCGACTACCACATTGCC TATCTCCTTTTGTTTCGAGAGATTCTTGTGGACGCGACAGAGGAGGAAGTGCAGACGGTT GAGAAGAGCCACGCAGAGCAAATGGCGCAAGCTCAGGCTGTGAACAAGCTGCCTAACGGC GAAGAGAAAAAGGCGCAAGAGTAG
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  • Fasta :-

    METMKISVKWNKQEFEDVEVDLGEPLALLNAQLMTLTGVPADRQKLMANRKLLKSVEDLR AAAKGGKSVKVTMLGTAEGGELQQPAEKTVFLEDLTPAQQAQLLREKNIEPLPTGLTNLG NTCYLASVLQMLRPCSELTRAIKSDMRNTTGDSAASYTALSGAAGAVHRLAVALKDFYGQ WESTVGAVQPVLLVHAIREAFPQFARKAPAAPGGLGGGFMQQDAEECFSCLMTVLSDSLP VSQNRKAFEALPARYEKASNFVDALFAFDMRVTTRRERGGTALADAEGDAPAASPEIKRD KNTKFTCFLGTMQNPINTLDEGLKFSLAEERIDLGAASAGSAQTGAAGAGSEAASVTLVR SMQFETLPFYFLVQFMRFEWKRAGGQAEKAKVCRSVKFGPTLDLYMHCTDELKESLRIGR AVVALRREREAGGVKDTQREDEANAGKETSAVAAASDAVMADEKTPASTEPSAAGDSTVY RTGFFQLLGIVTHQGRHADTGHYVGWTKKDQREPRVIEKEKKQKEREEERKREENPSGVA LKKKKAAPVDMWVKFDDDKVTETPWDQIDLAGGRSDYHIAYLLLFREILVDATEEEVQTV EKSHAEQMAQAQAVNKLPNGEEKKAQE

  • title: Active Site
  • coordinates: N118,C123,H502,D557
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_055070273 TDMRVTTRRE0.99unspNCLIV_055070273 TDMRVTTRRE0.99unspNCLIV_055070273 TDMRVTTRRE0.99unspNCLIV_055070274 TMRVTTRRER0.994unspNCLIV_055070468 SKTPASTEPS0.991unspNCLIV_05507055 SKLLKSVEDL0.998unspNCLIV_05507068 SKGGKSVKVT0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India