NCLIV_057270 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_057270OTHER0.9361860.0049320.058881
No Results

  • Fasta :-

    >NCLIV_057270 MSFFCFASPPVCTLSPSRRLCRLCCVFQNEEELMETLSQSLLAAVDRDCVAGWGAVVHVM TPNKITTRQLKCRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_057270.fa Sequence name : NCLIV_057270 Sequence length : 75 VALUES OF COMPUTED PARAMETERS Coef20 : 4.700 CoefTot : 0.312 ChDiff : 1 ZoneTo : 29 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.676 1.229 0.278 0.425 MesoH : -1.464 -0.538 -1.102 -0.734 MuHd_075 : 29.747 19.019 9.618 7.717 MuHd_095 : 30.362 10.037 8.237 5.677 MuHd_100 : 35.988 14.793 8.057 7.552 MuHd_105 : 39.136 18.923 8.207 8.909 Hmax_075 : 14.500 16.000 5.117 4.720 Hmax_095 : 9.625 8.400 4.320 2.800 Hmax_100 : 14.300 13.100 4.751 4.050 Hmax_105 : 15.283 14.350 5.083 5.332 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3958 0.6042 DFMC : 0.1630 0.8370 This protein is probably imported in mitochondria. f(Ser) = 0.1379 f(Arg) = 0.1034 CMi = 0.64205 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 75 NCLIV_057270 MSFFCFASPPVCTLSPSRRLCRLCCVFQNEEELMETLSQSLLAAVDRDCVAGWGAVVHVMTPNKITTRQLKCRMD 80 ........................................................................... 80 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_057270 18 CTLSPSR|RL 0.066 . NCLIV_057270 19 TLSPSRR|LC 0.137 . NCLIV_057270 22 PSRRLCR|LC 0.238 . NCLIV_057270 47 LLAAVDR|DC 0.137 . NCLIV_057270 64 HVMTPNK|IT 0.069 . NCLIV_057270 68 PNKITTR|QL 0.084 . NCLIV_057270 71 ITTRQLK|CR 0.123 . NCLIV_057270 73 TRQLKCR|MD 0.147 . ____________________________^_________________

  • Fasta :-

    >NCLIV_057270 ATGTCCTTTTTCTGTTTCGCCTCGCCCCCGGTCTGCACTCTGTCACCGTCTCGGCGACTC TGTCGGCTGTGCTGTGTTTTCCAGAACGAAGAGGAACTCATGGAGACTCTCTCGCAAAGC CTGCTGGCTGCCGTGGACCGCGACTGCGTTGCTGGATGGGGAGCGGTCGTCCACGTCATG ACCCCGAACAAAATCACGACTCGCCAACTGAAGTGCCGGATGGACTAA
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  • Fasta :-

    MSFFCFASPPVCTLSPSRRLCRLCCVFQNEEELMETLSQSLLAAVDRDCVAGWGAVVHVM TPNKITTRQLKCRMD

    No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India