NCLIV_060120 | conserved hypothetical protein

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_060120OTHER0.9646710.0082900.027039
No Results

  • Fasta :-

    >NCLIV_060120 MASVCSPCIRIDWRLAAFLRQLRSQLVLCGYSLASPYLAVLVGLPLPSSSSPSSLLLLSC FRLLHAERDPTVPQLFAASAAGVSASLHEALRKDLATIAFILPDGLQILGLLAFSPHTAA SPSSSALSSLAEAVAGQLPAWAKGLARLSETTHASAGSVSASAHRESPSPPSPCLLFACS LSGDAEQATESSGPTHARGSVFPWNFMALPLHSSSSSSLEEAGAADRLSVSVEDARSVLK TEKFLYLRSRLAVSLPLDTPVRVDLARGLCGKIRETPEDGEVASQEAERDLAAGEDCEDF LPQLPSTASREILAALRQQEEALSASSLSLFFCMPNGVYVHPTDPGVSGEGETAAGIGKA DARERKQGSKDAGRSGEADIWTAVASVASKAKHMVIRETQNVQGNDAHCEFSNRNVLDLP WLRSPPHVAQDARGLPLASLSVIPVPAFLSSLPGNAACDSDLSCTYTPARGASDPGLSAR HAQIFLDTCILVHGTASLASCAHRFRLAFCRQLKCLALQLLQSSSLPSSAGESVALETSS LTASLVSGDPSSSFSAHSPSSPSLSALSPPIYPRLTSWARSSDDTRREENGKPHADGAVT LSFHLVKVPWFQHPLLSWNNEAQPHSSLVIGPKWLPQTRAVTCLVWGDFAYHHYCQDNER DEGWGCCYRSLQLVISWFQRQNFTNKPVPSISDIQRLLKKYDMAHENLEIGSKAWIGTVE GSYVLNWYLHVPSKMLHLSSASELPAHAETLREHFDAVGTPVMMGVGDYAYTLVGVSVDI QTGKVFFLGKKVSLSAFPSSLLRFFRVARWEAAFLVVDPHYSGDDADIDKILDKGWVAWK KTSFFEKTAGAKFINLALPQTCTEGGALFI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_060120.fa Sequence name : NCLIV_060120 Sequence length : 870 VALUES OF COMPUTED PARAMETERS Coef20 : 5.084 CoefTot : 1.951 ChDiff : -12 ZoneTo : 66 KR : 5 DE : 1 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.682 1.900 0.372 0.745 MesoH : 0.438 0.827 -0.064 0.355 MuHd_075 : 25.843 17.510 5.317 7.644 MuHd_095 : 23.423 24.392 7.650 6.697 MuHd_100 : 28.717 25.057 10.532 7.843 MuHd_105 : 35.857 27.591 11.442 9.451 Hmax_075 : 6.200 14.583 -0.064 5.030 Hmax_095 : 17.063 19.425 4.720 6.116 Hmax_100 : 17.000 20.000 4.720 6.310 Hmax_105 : 12.017 17.675 4.442 5.290 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0879 0.9121 DFMC : 0.0643 0.9357 This protein is probably imported in chloroplast. f(Ser) = 0.1818 f(Arg) = 0.0758 CMi = 1.03270 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 870 NCLIV_060120 MASVCSPCIRIDWRLAAFLRQLRSQLVLCGYSLASPYLAVLVGLPLPSSSSPSSLLLLSCFRLLHAERDPTVPQLFAASA 80 AGVSASLHEALRKDLATIAFILPDGLQILGLLAFSPHTAASPSSSALSSLAEAVAGQLPAWAKGLARLSETTHASAGSVS 160 ASAHRESPSPPSPCLLFACSLSGDAEQATESSGPTHARGSVFPWNFMALPLHSSSSSSLEEAGAADRLSVSVEDARSVLK 240 TEKFLYLRSRLAVSLPLDTPVRVDLARGLCGKIRETPEDGEVASQEAERDLAAGEDCEDFLPQLPSTASREILAALRQQE 320 EALSASSLSLFFCMPNGVYVHPTDPGVSGEGETAAGIGKADARERKQGSKDAGRSGEADIWTAVASVASKAKHMVIRETQ 400 NVQGNDAHCEFSNRNVLDLPWLRSPPHVAQDARGLPLASLSVIPVPAFLSSLPGNAACDSDLSCTYTPARGASDPGLSAR 480 HAQIFLDTCILVHGTASLASCAHRFRLAFCRQLKCLALQLLQSSSLPSSAGESVALETSSLTASLVSGDPSSSFSAHSPS 560 SPSLSALSPPIYPRLTSWARSSDDTRREENGKPHADGAVTLSFHLVKVPWFQHPLLSWNNEAQPHSSLVIGPKWLPQTRA 640 VTCLVWGDFAYHHYCQDNERDEGWGCCYRSLQLVISWFQRQNFTNKPVPSISDIQRLLKKYDMAHENLEIGSKAWIGTVE 720 GSYVLNWYLHVPSKMLHLSSASELPAHAETLREHFDAVGTPVMMGVGDYAYTLVGVSVDIQTGKVFFLGKKVSLSAFPSS 800 LLRFFRVARWEAAFLVVDPHYSGDDADIDKILDKGWVAWKKTSFFEKTAGAKFINLALPQTCTEGGALFI 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ...................................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_060120 10 VCSPCIR|ID 0.082 . NCLIV_060120 14 CIRIDWR|LA 0.083 . NCLIV_060120 20 RLAAFLR|QL 0.111 . NCLIV_060120 23 AFLRQLR|SQ 0.152 . NCLIV_060120 62 LLLSCFR|LL 0.081 . NCLIV_060120 68 RLLHAER|DP 0.079 . NCLIV_060120 92 SLHEALR|KD 0.074 . NCLIV_060120 93 LHEALRK|DL 0.106 . NCLIV_060120 143 QLPAWAK|GL 0.067 . NCLIV_060120 147 WAKGLAR|LS 0.092 . NCLIV_060120 165 VSASAHR|ES 0.069 . NCLIV_060120 198 SGPTHAR|GS 0.090 . NCLIV_060120 227 EAGAADR|LS 0.075 . NCLIV_060120 236 VSVEDAR|SV 0.184 . NCLIV_060120 240 DARSVLK|TE 0.052 . NCLIV_060120 243 SVLKTEK|FL 0.058 . NCLIV_060120 248 EKFLYLR|SR 0.076 . NCLIV_060120 250 FLYLRSR|LA 0.082 . NCLIV_060120 262 PLDTPVR|VD 0.066 . NCLIV_060120 267 VRVDLAR|GL 0.144 . NCLIV_060120 272 ARGLCGK|IR 0.072 . NCLIV_060120 274 GLCGKIR|ET 0.097 . NCLIV_060120 289 ASQEAER|DL 0.180 . NCLIV_060120 310 LPSTASR|EI 0.157 . NCLIV_060120 317 EILAALR|QQ 0.081 . NCLIV_060120 359 TAAGIGK|AD 0.069 . NCLIV_060120 363 IGKADAR|ER 0.091 . NCLIV_060120 365 KADARER|KQ 0.090 . NCLIV_060120 366 ADARERK|QG 0.231 . NCLIV_060120 370 ERKQGSK|DA 0.105 . NCLIV_060120 374 GSKDAGR|SG 0.149 . NCLIV_060120 390 VASVASK|AK 0.077 . NCLIV_060120 392 SVASKAK|HM 0.078 . NCLIV_060120 397 AKHMVIR|ET 0.140 . NCLIV_060120 414 HCEFSNR|NV 0.105 . NCLIV_060120 423 LDLPWLR|SP 0.084 . NCLIV_060120 433 HVAQDAR|GL 0.095 . NCLIV_060120 470 CTYTPAR|GA 0.137 . NCLIV_060120 480 DPGLSAR|HA 0.174 . NCLIV_060120 504 LASCAHR|FR 0.106 . NCLIV_060120 506 SCAHRFR|LA 0.097 . NCLIV_060120 511 FRLAFCR|QL 0.091 . NCLIV_060120 514 AFCRQLK|CL 0.118 . NCLIV_060120 574 SPPIYPR|LT 0.124 . NCLIV_060120 580 RLTSWAR|SS 0.175 . NCLIV_060120 586 RSSDDTR|RE 0.111 . NCLIV_060120 587 SSDDTRR|EE 0.151 . NCLIV_060120 592 RREENGK|PH 0.072 . NCLIV_060120 607 LSFHLVK|VP 0.059 . NCLIV_060120 633 SLVIGPK|WL 0.069 . NCLIV_060120 639 KWLPQTR|AV 0.119 . NCLIV_060120 660 YCQDNER|DE 0.112 . NCLIV_060120 669 GWGCCYR|SL 0.131 . NCLIV_060120 680 VISWFQR|QN 0.118 . NCLIV_060120 686 RQNFTNK|PV 0.081 . NCLIV_060120 696 SISDIQR|LL 0.115 . NCLIV_060120 699 DIQRLLK|KY 0.112 . NCLIV_060120 700 IQRLLKK|YD 0.134 . NCLIV_060120 713 NLEIGSK|AW 0.063 . NCLIV_060120 734 YLHVPSK|ML 0.070 . NCLIV_060120 752 AHAETLR|EH 0.100 . NCLIV_060120 784 VDIQTGK|VF 0.062 . NCLIV_060120 790 KVFFLGK|KV 0.072 . NCLIV_060120 791 VFFLGKK|VS 0.072 . NCLIV_060120 803 FPSSLLR|FF 0.105 . NCLIV_060120 806 SLLRFFR|VA 0.312 . NCLIV_060120 809 RFFRVAR|WE 0.218 . NCLIV_060120 830 DDADIDK|IL 0.070 . NCLIV_060120 834 IDKILDK|GW 0.069 . NCLIV_060120 840 KGWVAWK|KT 0.071 . NCLIV_060120 841 GWVAWKK|TS 0.096 . NCLIV_060120 847 KTSFFEK|TA 0.119 . NCLIV_060120 852 EKTAGAK|FI 0.077 . ____________________________^_________________

  • Fasta :-

    >NCLIV_060120 ATGGCGTCTGTGTGTTCGCCTTGCATTCGAATAGACTGGAGACTCGCCGCCTTCCTCCGC CAGCTCCGCTCGCAGTTGGTGCTCTGCGGATACTCCCTGGCCTCTCCCTACCTTGCCGTC CTCGTAGGTCTTCCGCTTCCTTCCTCGTCTTCTCCGTCGTCTCTTCTTCTCCTCTCGTGT TTTCGTCTGCTGCATGCAGAGCGCGACCCCACAGTGCCGCAGCTGTTTGCCGCTTCGGCC GCGGGCGTCTCCGCGTCTCTCCACGAGGCCCTTCGGAAGGACTTGGCGACGATTGCCTTC ATCCTGCCCGACGGCCTCCAGATCCTCGGCCTCCTTGCCTTCTCCCCGCACACCGCCGCC TCGCCTTCTTCCTCCGCTCTTTCGTCCCTGGCTGAGGCCGTGGCCGGCCAGCTCCCCGCC TGGGCGAAAGGTCTCGCGCGTCTTTCGGAAACAACGCACGCTTCAGCCGGCTCGGTCTCT GCTTCAGCTCACCGCGAATCCCCCTCCCCGCCTTCTCCGTGTCTCCTTTTCGCGTGTTCT CTCTCTGGAGATGCCGAGCAAGCAACAGAGTCTTCCGGGCCCACGCATGCGCGTGGCTCC GTTTTCCCGTGGAATTTTATGGCCCTTCCTCTCCACTCCTCTTCGTCCTCTTCGCTCGAG GAGGCAGGCGCAGCGGATCGGCTGAGTGTCTCCGTGGAGGACGCCCGTTCCGTGTTGAAG ACAGAGAAGTTCCTTTACTTGCGGTCTCGGCTCGCTGTGTCGCTGCCCCTGGACACTCCG GTTCGCGTTGATCTCGCGCGGGGCCTCTGCGGAAAAATTCGAGAGACACCTGAAGACGGC GAAGTCGCGTCTCAGGAGGCCGAGCGCGACCTCGCAGCGGGGGAAGATTGCGAAGACTTC CTCCCTCAGCTGCCTTCGACGGCGTCTAGAGAAATCCTGGCGGCTCTCCGGCAACAAGAA GAGGCACTCAGCGCCTCGTCCCTCAGCCTGTTCTTCTGCATGCCCAACGGGGTGTACGTA CACCCGACGGACCCCGGTGTTTCTGGCGAGGGAGAGACTGCGGCTGGGATCGGGAAGGCG GACGCCAGAGAGAGAAAGCAAGGCAGCAAGGACGCCGGTCGAAGCGGAGAAGCAGACATC TGGACAGCCGTGGCGAGCGTGGCCTCGAAGGCGAAGCATATGGTCATCCGCGAGACGCAA AACGTACAAGGGAACGACGCGCACTGCGAGTTCTCAAACCGAAACGTTCTGGACCTTCCC TGGCTCCGTTCCCCGCCGCATGTGGCACAAGACGCACGTGGCCTCCCTCTGGCTTCTCTC TCCGTGATTCCCGTTCCAGCTTTTCTCTCGTCCCTCCCGGGAAACGCCGCCTGCGACTCC GATCTTTCCTGTACATACACCCCAGCGCGCGGCGCGTCGGACCCAGGTCTCTCGGCGCGC CACGCCCAGATCTTCCTAGACACTTGCATTCTCGTCCACGGCACCGCTTCACTCGCCTCG TGCGCACATCGCTTCCGTCTCGCTTTCTGTCGTCAGCTGAAGTGCCTCGCCCTCCAACTT CTCCAGTCTTCTTCGCTTCCGTCCTCGGCTGGTGAGAGCGTCGCGTTGGAGACTTCCTCG CTGACTGCGTCTCTCGTCAGCGGCGATCCTTCCTCGTCCTTCTCTGCGCATTCCCCGTCC TCACCCTCGCTCTCTGCGCTTTCTCCCCCGATCTACCCTCGTCTGACTTCGTGGGCAAGG AGCAGCGACGACACGCGGCGCGAGGAAAATGGAAAACCGCATGCGGACGGGGCCGTCACG CTGAGCTTCCACTTGGTGAAAGTGCCGTGGTTCCAGCACCCGTTACTCTCGTGGAACAAC GAGGCACAGCCCCACAGCTCTCTCGTCATCGGCCCCAAGTGGCTGCCTCAAACGCGCGCC GTCACTTGCCTTGTGTGGGGTGACTTCGCCTACCACCACTACTGCCAGGACAACGAACGC GACGAGGGCTGGGGCTGTTGCTATCGCTCTCTTCAGCTCGTCATCAGTTGGTTCCAGCGT CAGAACTTCACCAACAAGCCCGTCCCGTCCATAAGTGACATCCAGCGCCTTCTAAAGAAA TACGACATGGCCCATGAAAATCTTGAGATCGGCTCAAAAGCCTGGATTGGGACCGTTGAA GGAAGCTACGTATTGAATTGGTATTTGCATGTGCCGAGCAAAATGCTTCATCTTTCGAGC GCAAGCGAACTTCCCGCTCACGCTGAAACTCTCCGAGAGCATTTTGACGCCGTCGGCACT CCCGTGATGATGGGGGTGGGCGACTACGCGTACACGTTGGTGGGCGTCTCAGTCGACATC CAAACAGGCAAGGTTTTCTTTCTCGGAAAAAAGGTTTCTCTTTCTGCGTTTCCGTCTTCT CTCTTGAGGTTCTTCCGCGTCGCGCGTTGGGAGGCTGCGTTCCTAGTTGTAGATCCACAC TACTCGGGAGACGACGCAGATATCGACAAGATCCTCGACAAAGGCTGGGTCGCCTGGAAG AAGACCAGTTTTTTTGAGAAGACAGCAGGTGCGAAGTTCATCAACCTGGCCCTTCCACAG ACATGTACAGAAGGCGGCGCTCTCTTTATTTGA
  • Download Fasta

  • Fasta :-

    MASVCSPCIRIDWRLAAFLRQLRSQLVLCGYSLASPYLAVLVGLPLPSSSSPSSLLLLSC FRLLHAERDPTVPQLFAASAAGVSASLHEALRKDLATIAFILPDGLQILGLLAFSPHTAA SPSSSALSSLAEAVAGQLPAWAKGLARLSETTHASAGSVSASAHRESPSPPSPCLLFACS LSGDAEQATESSGPTHARGSVFPWNFMALPLHSSSSSSLEEAGAADRLSVSVEDARSVLK TEKFLYLRSRLAVSLPLDTPVRVDLARGLCGKIRETPEDGEVASQEAERDLAAGEDCEDF LPQLPSTASREILAALRQQEEALSASSLSLFFCMPNGVYVHPTDPGVSGEGETAAGIGKA DARERKQGSKDAGRSGEADIWTAVASVASKAKHMVIRETQNVQGNDAHCEFSNRNVLDLP WLRSPPHVAQDARGLPLASLSVIPVPAFLSSLPGNAACDSDLSCTYTPARGASDPGLSAR HAQIFLDTCILVHGTASLASCAHRFRLAFCRQLKCLALQLLQSSSLPSSAGESVALETSS LTASLVSGDPSSSFSAHSPSSPSLSALSPPIYPRLTSWARSSDDTRREENGKPHADGAVT LSFHLVKVPWFQHPLLSWNNEAQPHSSLVIGPKWLPQTRAVTCLVWGDFAYHHYCQDNER DEGWGCCYRSLQLVISWFQRQNFTNKPVPSISDIQRLLKKYDMAHENLEIGSKAWIGTVE GSYVLNWYLHVPSKMLHLSSASELPAHAETLREHFDAVGTPVMMGVGDYAYTLVGVSVDI QTGKVFFLGKKVSLSAFPSSLLRFFRVARWEAAFLVVDPHYSGDDADIDKILDKGWVAWK KTSFFEKTAGAKFINLALPQTCTEGGALFI

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_060120229 SADRLSVSVE0.991unspNCLIV_060120229 SADRLSVSVE0.991unspNCLIV_060120229 SADRLSVSVE0.991unspNCLIV_060120231 SRLSVSVEDA0.998unspNCLIV_060120348 SDPGVSGEGE0.992unspNCLIV_060120529 SSLPSSAGES0.995unspNCLIV_060120558 SFSAHSPSSP0.994unspNCLIV_060120581 SSWARSSDDT0.997unspNCLIV_060120167 SAHRESPSPP0.996unspNCLIV_060120218 SSSSSSLEEA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India