NCLIV_060380 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_060380OTHER0.9999950.0000020.000003
No Results

  • Fasta :-

    >NCLIV_060380 MDSAAVWGDEGEDVATAELAGLTAADLRMRTSMIDSEVRILKSEERIKDNQEKIRLNRQL PYLVANVVELFDSEEADEEEEDGAVGDIDAQRKGKCVVIKTSTRQTIFLPVIGLVDHTLL KPGDLVGVNKDSYLVLDKLPAEYDSRVKAMEVDERPQEEYNDVGGLDKQIQELIEAIVLP MTHKERFEKIGIRPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA KMVRDAFELAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDR IKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARERILQIHARKMNVNKQDVNFREL ARSTDDFNGAQLKAVCVEAGMVALRRGATELCHEDFVEGVAQVQAKKKSSLNYFT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_060380.fa Sequence name : NCLIV_060380 Sequence length : 415 VALUES OF COMPUTED PARAMETERS Coef20 : 3.314 CoefTot : 0.000 ChDiff : -15 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.182 -0.026 0.526 MesoH : -0.671 0.330 -0.398 0.201 MuHd_075 : 21.403 13.821 5.211 3.141 MuHd_095 : 25.472 4.086 5.288 2.714 MuHd_100 : 25.065 7.651 4.902 3.759 MuHd_105 : 26.393 11.019 5.137 4.626 Hmax_075 : 4.200 12.133 -0.385 3.897 Hmax_095 : 2.200 2.700 -1.428 2.710 Hmax_100 : 2.300 3.000 -1.185 3.370 Hmax_105 : 4.288 4.900 -1.405 3.530 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9607 0.0393 DFMC : 0.9413 0.0587
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 415 NCLIV_060380 MDSAAVWGDEGEDVATAELAGLTAADLRMRTSMIDSEVRILKSEERIKDNQEKIRLNRQLPYLVANVVELFDSEEADEEE 80 EDGAVGDIDAQRKGKCVVIKTSTRQTIFLPVIGLVDHTLLKPGDLVGVNKDSYLVLDKLPAEYDSRVKAMEVDERPQEEY 160 NDVGGLDKQIQELIEAIVLPMTHKERFEKIGIRPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA 240 KMVRDAFELAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVLDPALLRS 320 GRLDRKIELPHPNEEARERILQIHARKMNVNKQDVNFRELARSTDDFNGAQLKAVCVEAGMVALRRGATELCHEDFVEGV 400 AQVQAKKKSSLNYFT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_060380 28 LTAADLR|MR 0.085 . NCLIV_060380 30 AADLRMR|TS 0.068 . NCLIV_060380 39 MIDSEVR|IL 0.083 . NCLIV_060380 42 SEVRILK|SE 0.194 . NCLIV_060380 46 ILKSEER|IK 0.098 . NCLIV_060380 48 KSEERIK|DN 0.072 . NCLIV_060380 53 IKDNQEK|IR 0.057 . NCLIV_060380 55 DNQEKIR|LN 0.098 . NCLIV_060380 58 EKIRLNR|QL 0.192 . NCLIV_060380 92 GDIDAQR|KG 0.073 . NCLIV_060380 93 DIDAQRK|GK 0.098 . NCLIV_060380 95 DAQRKGK|CV 0.243 . NCLIV_060380 100 GKCVVIK|TS 0.076 . NCLIV_060380 104 VIKTSTR|QT 0.079 . NCLIV_060380 121 VDHTLLK|PG 0.061 . NCLIV_060380 130 DLVGVNK|DS 0.073 . NCLIV_060380 138 SYLVLDK|LP 0.052 . NCLIV_060380 146 PAEYDSR|VK 0.070 . NCLIV_060380 148 EYDSRVK|AM 0.059 . NCLIV_060380 155 AMEVDER|PQ 0.090 . NCLIV_060380 168 DVGGLDK|QI 0.062 . NCLIV_060380 184 VLPMTHK|ER 0.059 . NCLIV_060380 186 PMTHKER|FE 0.098 . NCLIV_060380 189 HKERFEK|IG 0.115 . NCLIV_060380 193 FEKIGIR|PP 0.084 . NCLIV_060380 196 IGIRPPK|GV 0.252 . NCLIV_060380 208 GPPGTGK|TL 0.059 . NCLIV_060380 213 GKTLLAR|AC 0.099 . NCLIV_060380 220 ACAAQTK|AT 0.076 . NCLIV_060380 225 TKATFLK|LA 0.128 . NCLIV_060380 241 FIGDGAK|MV 0.083 . NCLIV_060380 244 DGAKMVR|DA 0.126 . NCLIV_060380 251 DAFELAK|EK 0.065 . NCLIV_060380 253 FELAKEK|AP 0.058 . NCLIV_060380 269 LDAIGTK|RF 0.062 . NCLIV_060380 270 DAIGTKR|FD 0.174 . NCLIV_060380 279 SELSGDR|EV 0.080 . NCLIV_060380 283 GDREVQR|TM 0.096 . NCLIV_060380 300 GFSSDDR|IK 0.081 . NCLIV_060380 302 SSDDRIK|VI 0.060 . NCLIV_060380 309 VIAATNR|PD 0.072 . NCLIV_060380 319 LDPALLR|SG 0.083 . NCLIV_060380 322 ALLRSGR|LD 0.220 . NCLIV_060380 325 RSGRLDR|KI 0.247 . NCLIV_060380 326 SGRLDRK|IE 0.071 . NCLIV_060380 337 HPNEEAR|ER 0.118 . NCLIV_060380 339 NEEARER|IL 0.088 . NCLIV_060380 346 ILQIHAR|KM 0.104 . NCLIV_060380 347 LQIHARK|MN 0.085 . NCLIV_060380 352 RKMNVNK|QD 0.065 . NCLIV_060380 358 KQDVNFR|EL 0.094 . NCLIV_060380 362 NFRELAR|ST 0.162 . NCLIV_060380 373 FNGAQLK|AV 0.088 . NCLIV_060380 385 AGMVALR|RG 0.093 . NCLIV_060380 386 GMVALRR|GA 0.180 . NCLIV_060380 406 VAQVQAK|KK 0.075 . NCLIV_060380 407 AQVQAKK|KS 0.092 . NCLIV_060380 408 QVQAKKK|SS 0.172 . ____________________________^_________________

  • Fasta :-

    >NCLIV_060380 ATGGATAGTGCAGCTGTCTGGGGGGACGAGGGGGAAGACGTGGCGACGGCCGAGTTGGCC GGTCTCACTGCAGCCGACCTGCGCATGCGCACCTCGATGATCGACAGCGAAGTGCGAATC CTCAAGAGCGAAGAGCGCATCAAGGATAACCAGGAGAAGATTCGCCTCAACCGCCAACTG CCGTATCTCGTCGCCAACGTTGTGGAGCTTTTCGACAGCGAAGAAGCAGACGAAGAAGAA GAAGACGGCGCCGTAGGGGACATCGACGCCCAGAGAAAAGGAAAATGCGTCGTCATCAAA ACATCCACTCGACAGACGATTTTCCTTCCCGTGATCGGCCTCGTGGACCACACGCTGCTT AAGCCGGGCGACCTGGTGGGTGTGAACAAGGACAGTTACTTGGTCCTCGACAAGCTGCCG GCGGAGTACGACAGTCGCGTGAAAGCCATGGAGGTCGACGAGAGACCGCAAGAAGAGTAC AACGACGTCGGCGGCCTGGACAAACAAATCCAGGAACTCATCGAGGCAATTGTGCTACCG ATGACGCACAAGGAGCGATTTGAGAAGATCGGCATTCGGCCTCCAAAGGGTGTTCTCATG TATGGCCCCCCGGGAACGGGGAAGACACTCCTCGCTCGTGCATGCGCTGCACAGACAAAG GCCACGTTCCTGAAGTTGGCGGGCCCCCAGCTGGTACAGATGTTCATCGGCGACGGCGCA AAGATGGTTCGCGACGCATTCGAACTCGCCAAAGAAAAGGCCCCCGCAATCATCTTCATC GATGAGCTGGATGCGATTGGAACCAAACGGTTCGACAGCGAATTGTCAGGCGACCGCGAA GTGCAGCGCACGATGCTGGAGCTTCTCAACCAGCTAGACGGTTTCAGCAGCGACGACCGC ATCAAAGTGATTGCGGCGACAAACAGACCTGACGTGCTGGACCCAGCGCTTCTCCGCTCA GGGCGCCTCGACAGGAAAATCGAATTGCCACATCCCAACGAAGAAGCGAGAGAACGAATC CTGCAAATCCACGCCAGGAAAATGAACGTCAACAAACAAGATGTGAATTTCCGAGAGCTG GCGAGGTCGACAGACGATTTTAACGGTGCCCAGTTGAAGGCAGTTTGCGTGGAAGCAGGG ATGGTGGCGCTGCGCCGCGGCGCCACGGAGCTGTGCCACGAAGACTTCGTGGAGGGCGTT GCGCAGGTCCAGGCGAAGAAGAAGTCTTCTCTCAACTATTTCACGTAA
  • Download Fasta

  • Fasta :-

    MDSAAVWGDEGEDVATAELAGLTAADLRMRTSMIDSEVRILKSEERIKDNQEKIRLNRQL PYLVANVVELFDSEEADEEEEDGAVGDIDAQRKGKCVVIKTSTRQTIFLPVIGLVDHTLL KPGDLVGVNKDSYLVLDKLPAEYDSRVKAMEVDERPQEEYNDVGGLDKQIQELIEAIVLP MTHKERFEKIGIRPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGA KMVRDAFELAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDR IKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARERILQIHARKMNVNKQDVNFREL ARSTDDFNGAQLKAVCVEAGMVALRRGATELCHEDFVEGVAQVQAKKKSSLNYFT

  • title: ATP binding site
  • coordinates: P203,P204,G205,T206,G207,K208,T209,L210,D261,N308
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_060380363 SELARSTDDF0.991unspNCLIV_060380363 SELARSTDDF0.991unspNCLIV_060380363 SELARSTDDF0.991unspNCLIV_06038032 SRMRTSMIDS0.997unspNCLIV_060380273 SKRFDSELSG0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India