NCLIV_063340 | hypothetical protein

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_063340SP0.0023640.9976340.000002CS pos: 31-32. SSA-NA. Pr: 0.6591
No Results

  • Fasta :-

    >NCLIV_063340 MDTAAPSAGRRARAFCLLLSCCLVALPLSSANALVPPSSETVGPSFLAASSQSPAEPPQE RLAGNRRDASHSSSLPSGTGSALRIEEIASSGSSPEVRDEAPRAPATRTTEKFIRPYHTG PSHRSSAYSATSGIPLCHTCSTFDAAKGGCRLCLHGEVASDFMMPMTPIRNIDTHREETL ARLEANHRTHLNDNKNFYVLRGKGPFGSLGNLPGTPGLDAAVAFGVVPPELPSASFAQTH SGQNSNPGDVQVGASAGGADVSNEATTSDLDLKLAETSVPILQMKDSQYVGVIGIGTPPQ FVKPIFDTGSTNLWVVGSKCKDDTCTKVTQFDPSASSTFRTASPPVHLDITFGTGRIEGS TGIDDFTVGPFLVKGQSFGLVESEGGHNMHGNIFKSINFEGIVGLAFPEMSSTGDVPIYD NIIHQGTLKENEFAFYMAKGSQVSALFFGGVDPRFYEPPIHMFPVTREHYWETPLDAIYI GDKKFCCDEGTNNYVILDSGTSFNTMPSGELGKLLEMIPPQECDLEDPEFTKDFPTITYV IGGVKFPLTPEQYLVRSKGNECKPAYMQIDVPSQFGHAYILGSVAFMRHYYTVFRRSDGT RPSLVGIARAVHSDDNRAYLSNVLNEYPGMHMRKQDLMMERSMNAPSMREL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_063340.fa Sequence name : NCLIV_063340 Sequence length : 651 VALUES OF COMPUTED PARAMETERS Coef20 : 4.834 CoefTot : 1.274 ChDiff : -17 ZoneTo : 55 KR : 3 DE : 2 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.994 2.171 0.590 0.623 MesoH : -0.213 0.194 -0.233 0.270 MuHd_075 : 16.503 12.662 4.584 4.285 MuHd_095 : 27.942 20.964 7.538 5.275 MuHd_100 : 27.280 18.047 6.480 6.232 MuHd_105 : 26.490 18.294 6.924 6.971 Hmax_075 : 0.262 14.100 6.456 3.168 Hmax_095 : 14.900 12.950 3.924 5.070 Hmax_100 : 15.500 16.200 3.924 5.070 Hmax_105 : 3.325 12.075 2.447 2.669 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9777 0.0223 DFMC : 0.9308 0.0692
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 651 NCLIV_063340 MDTAAPSAGRRARAFCLLLSCCLVALPLSSANALVPPSSETVGPSFLAASSQSPAEPPQERLAGNRRDASHSSSLPSGTG 80 SALRIEEIASSGSSPEVRDEAPRAPATRTTEKFIRPYHTGPSHRSSAYSATSGIPLCHTCSTFDAAKGGCRLCLHGEVAS 160 DFMMPMTPIRNIDTHREETLARLEANHRTHLNDNKNFYVLRGKGPFGSLGNLPGTPGLDAAVAFGVVPPELPSASFAQTH 240 SGQNSNPGDVQVGASAGGADVSNEATTSDLDLKLAETSVPILQMKDSQYVGVIGIGTPPQFVKPIFDTGSTNLWVVGSKC 320 KDDTCTKVTQFDPSASSTFRTASPPVHLDITFGTGRIEGSTGIDDFTVGPFLVKGQSFGLVESEGGHNMHGNIFKSINFE 400 GIVGLAFPEMSSTGDVPIYDNIIHQGTLKENEFAFYMAKGSQVSALFFGGVDPRFYEPPIHMFPVTREHYWETPLDAIYI 480 GDKKFCCDEGTNNYVILDSGTSFNTMPSGELGKLLEMIPPQECDLEDPEFTKDFPTITYVIGGVKFPLTPEQYLVRSKGN 560 ECKPAYMQIDVPSQFGHAYILGSVAFMRHYYTVFRRSDGTRPSLVGIARAVHSDDNRAYLSNVLNEYPGMHMRKQDLMME 640 RSMNAPSMREL 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_063340 10 AAPSAGR|RA 0.075 . NCLIV_063340 11 APSAGRR|AR 0.127 . NCLIV_063340 13 SAGRRAR|AF 0.370 . NCLIV_063340 61 AEPPQER|LA 0.112 . NCLIV_063340 66 ERLAGNR|RD 0.070 . NCLIV_063340 67 RLAGNRR|DA 0.299 . NCLIV_063340 84 GTGSALR|IE 0.081 . NCLIV_063340 98 GSSPEVR|DE 0.129 . NCLIV_063340 103 VRDEAPR|AP 0.079 . NCLIV_063340 108 PRAPATR|TT 0.130 . NCLIV_063340 112 ATRTTEK|FI 0.080 . NCLIV_063340 115 TTEKFIR|PY 0.129 . NCLIV_063340 124 HTGPSHR|SS 0.161 . NCLIV_063340 147 STFDAAK|GG 0.062 . NCLIV_063340 151 AAKGGCR|LC 0.081 . NCLIV_063340 170 MPMTPIR|NI 0.142 . NCLIV_063340 176 RNIDTHR|EE 0.080 . NCLIV_063340 182 REETLAR|LE 0.086 . NCLIV_063340 188 RLEANHR|TH 0.067 . NCLIV_063340 195 THLNDNK|NF 0.061 . NCLIV_063340 201 KNFYVLR|GK 0.119 . NCLIV_063340 203 FYVLRGK|GP 0.064 . NCLIV_063340 273 TSDLDLK|LA 0.073 . NCLIV_063340 285 VPILQMK|DS 0.080 . NCLIV_063340 303 TPPQFVK|PI 0.091 . NCLIV_063340 319 LWVVGSK|CK 0.061 . NCLIV_063340 321 VVGSKCK|DD 0.066 . NCLIV_063340 327 KDDTCTK|VT 0.055 . NCLIV_063340 340 SASSTFR|TA 0.148 . NCLIV_063340 356 ITFGTGR|IE 0.082 . NCLIV_063340 374 VGPFLVK|GQ 0.065 . NCLIV_063340 395 MHGNIFK|SI 0.098 . NCLIV_063340 429 IHQGTLK|EN 0.068 . NCLIV_063340 439 FAFYMAK|GS 0.067 . NCLIV_063340 454 FGGVDPR|FY 0.133 . NCLIV_063340 467 HMFPVTR|EH 0.088 . NCLIV_063340 483 AIYIGDK|KF 0.059 . NCLIV_063340 484 IYIGDKK|FC 0.100 . NCLIV_063340 513 PSGELGK|LL 0.075 . NCLIV_063340 532 EDPEFTK|DF 0.068 . NCLIV_063340 545 YVIGGVK|FP 0.055 . NCLIV_063340 556 PEQYLVR|SK 0.120 . NCLIV_063340 558 QYLVRSK|GN 0.065 . NCLIV_063340 563 SKGNECK|PA 0.086 . NCLIV_063340 588 GSVAFMR|HY 0.129 . NCLIV_063340 595 HYYTVFR|RS 0.090 . NCLIV_063340 596 YYTVFRR|SD 0.233 . NCLIV_063340 601 RRSDGTR|PS 0.117 . NCLIV_063340 609 SLVGIAR|AV 0.128 . NCLIV_063340 617 VHSDDNR|AY 0.082 . NCLIV_063340 633 YPGMHMR|KQ 0.094 . NCLIV_063340 634 PGMHMRK|QD 0.101 . NCLIV_063340 641 QDLMMER|SM 0.095 . NCLIV_063340 649 MNAPSMR|EL 0.134 . ____________________________^_________________

  • Fasta :-

    >NCLIV_063340 ATGGATACCGCGGCTCCATCGGCGGGGCGACGCGCTCGCGCCTTCTGTTTGCTTCTTTCT TGCTGTCTTGTTGCCTTGCCTCTCTCTTCTGCGAACGCCCTCGTTCCTCCGTCCAGCGAA ACAGTTGGACCCTCTTTCCTCGCTGCGTCTTCACAGTCGCCGGCGGAACCTCCTCAGGAG CGTCTGGCTGGGAATCGGCGTGACGCGTCGCACAGTTCGTCGCTCCCGTCCGGAACCGGA AGCGCTCTGAGGATCGAGGAAATCGCCTCTTCTGGGTCTTCACCTGAAGTCCGAGATGAA GCGCCACGGGCTCCGGCGACGCGGACGACAGAAAAATTCATTCGCCCGTACCACACTGGA CCCAGTCACCGGTCGTCAGCCTACTCAGCCACTTCAGGCATTCCTCTCTGCCACACATGC AGCACCTTCGACGCTGCCAAAGGAGGCTGCCGTCTTTGTCTCCATGGAGAAGTCGCCTCC GACTTCATGATGCCGATGACTCCCATTCGGAACATCGACACACATCGAGAGGAGACTCTG GCGCGCCTTGAGGCCAACCACAGGACGCATTTGAACGATAACAAGAACTTTTACGTGCTG CGCGGGAAGGGGCCGTTCGGTTCCCTCGGGAACCTCCCCGGAACGCCCGGTTTGGATGCA GCGGTGGCTTTCGGAGTTGTTCCTCCCGAGCTCCCTTCTGCTTCTTTCGCTCAGACGCAC AGCGGCCAGAACAGCAACCCTGGAGACGTGCAGGTCGGAGCATCAGCCGGCGGTGCCGAC GTTTCGAACGAAGCGACGACCTCGGACCTGGATCTGAAGCTCGCCGAAACGTCCGTTCCC ATCCTGCAGATGAAAGACAGCCAATACGTTGGAGTCATTGGAATCGGAACCCCGCCTCAG TTCGTCAAACCGATCTTCGACACTGGCAGCACGAATCTCTGGGTGGTTGGTTCCAAATGC AAAGACGACACCTGCACCAAGGTCACGCAATTCGATCCCTCTGCCTCGTCCACCTTTAGA ACGGCCAGTCCCCCAGTGCATCTGGATATTACCTTCGGTACTGGCCGCATCGAAGGGAGC ACGGGAATCGACGACTTCACAGTCGGACCGTTCTTGGTCAAGGGACAGTCCTTCGGCTTG GTGGAAAGTGAAGGCGGCCACAACATGCACGGCAACATCTTCAAGTCGATCAATTTTGAA GGCATTGTCGGTCTCGCTTTCCCCGAGATGTCCAGCACGGGGGATGTTCCCATCTACGAC AACATCATCCACCAAGGCACTCTGAAGGAGAACGAATTTGCCTTTTACATGGCAAAGGGC TCCCAGGTTTCGGCTCTGTTCTTTGGAGGCGTTGATCCGCGATTTTACGAGCCCCCAATC CACATGTTCCCCGTGACACGCGAGCACTACTGGGAGACTCCCCTCGACGCCATTTACATT GGAGACAAGAAGTTCTGCTGTGACGAAGGCACGAACAACTACGTCATCCTTGACTCGGGC ACGAGCTTCAACACCATGCCTAGCGGCGAGCTCGGCAAACTGTTGGAAATGATTCCCCCC CAGGAATGCGATTTGGAAGATCCCGAATTTACCAAGGATTTCCCTACAATTACCTACGTG ATCGGAGGCGTGAAGTTCCCCCTGACACCAGAGCAGTACTTGGTGCGAAGCAAGGGCAAC GAGTGCAAACCAGCGTACATGCAGATCGACGTACCATCCCAGTTCGGGCATGCGTACATT CTTGGATCCGTCGCTTTCATGCGGCACTACTATACTGTCTTCCGACGTTCCGACGGAACG CGGCCGTCTTTGGTCGGTATCGCGCGCGCGGTGCACAGCGACGACAACAGGGCGTATCTT TCGAACGTGCTGAATGAATATCCCGGCATGCATATGCGCAAACAGGATTTGATGATGGAG AGGTCAATGAATGCTCCGTCGATGCGTGAGTTGTGA
  • Download Fasta

  • Fasta :-

    MDTAAPSAGRRARAFCLLLSCCLVALPLSSANALVPPSSETVGPSFLAASSQSPAEPPQE RLAGNRRDASHSSSLPSGTGSALRIEEIASSGSSPEVRDEAPRAPATRTTEKFIRPYHTG PSHRSSAYSATSGIPLCHTCSTFDAAKGGCRLCLHGEVASDFMMPMTPIRNIDTHREETL ARLEANHRTHLNDNKNFYVLRGKGPFGSLGNLPGTPGLDAAVAFGVVPPELPSASFAQTH SGQNSNPGDVQVGASAGGADVSNEATTSDLDLKLAETSVPILQMKDSQYVGVIGIGTPPQ FVKPIFDTGSTNLWVVGSKCKDDTCTKVTQFDPSASSTFRTASPPVHLDITFGTGRIEGS TGIDDFTVGPFLVKGQSFGLVESEGGHNMHGNIFKSINFEGIVGLAFPEMSSTGDVPIYD NIIHQGTLKENEFAFYMAKGSQVSALFFGGVDPRFYEPPIHMFPVTREHYWETPLDAIYI GDKKFCCDEGTNNYVILDSGTSFNTMPSGELGKLLEMIPPQECDLEDPEFTKDFPTITYV IGGVKFPLTPEQYLVRSKGNECKPAYMQIDVPSQFGHAYILGSVAFMRHYYTVFRRSDGT RPSLVGIARAVHSDDNRAYLSNVLNEYPGMHMRKQDLMMERSMNAPSMREL

  • title: inhibitor binding site
  • coordinates: D307,G309,T311,D349,I350,T351,I402
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_063340126 SSHRSSAYSA0.994unspNCLIV_063340126 SSHRSSAYSA0.994unspNCLIV_063340126 SSHRSSAYSA0.994unspNCLIV_063340174 TRNIDTHREE0.991unspNCLIV_06334053 SASSQSPAEP0.992unspNCLIV_06334094 SSSGSSPEVR0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India