NCLIV_064640 | putative signal peptidase complex subunit 3, related

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  • Fasta :-

    >NCLIV_064640 MDTYLNRGNAVICTLLAALALAALGNHFSTYLLQADPIGEVSIAEVYEFGVNHALQGEQA QVALNIQADLTSCFNWNTKQLFVYVIVRYETPKNSRNEVIIWDHIITDPEDAVLGLEGVI NKYPLRDHGRGLRNRTVTVSLEYAYHPVVGVIKSGHVTSSTYTLPSTYFRYKKGN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_064640.fa Sequence name : NCLIV_064640 Sequence length : 175 VALUES OF COMPUTED PARAMETERS Coef20 : 4.430 CoefTot : 0.362 ChDiff : -2 ZoneTo : 35 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.688 2.141 0.371 0.686 MesoH : -0.046 0.617 -0.252 0.342 MuHd_075 : 18.742 15.024 4.436 3.820 MuHd_095 : 19.237 16.836 6.258 5.384 MuHd_100 : 18.068 16.602 5.675 5.923 MuHd_105 : 16.598 14.328 4.849 5.497 Hmax_075 : 9.800 21.600 2.478 6.840 Hmax_095 : 15.200 17.400 2.990 6.540 Hmax_100 : 15.200 18.400 2.990 6.540 Hmax_105 : 16.012 21.500 2.279 6.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9740 0.0260 DFMC : 0.9656 0.0344
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 175 NCLIV_064640 MDTYLNRGNAVICTLLAALALAALGNHFSTYLLQADPIGEVSIAEVYEFGVNHALQGEQAQVALNIQADLTSCFNWNTKQ 80 LFVYVIVRYETPKNSRNEVIIWDHIITDPEDAVLGLEGVINKYPLRDHGRGLRNRTVTVSLEYAYHPVVGVIKSGHVTSS 160 TYTLPSTYFRYKKGN 240 ................................................................................ 80 ................................................................................ 160 ............... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_064640 7 MDTYLNR|GN 0.081 . NCLIV_064640 79 CFNWNTK|QL 0.066 . NCLIV_064640 88 FVYVIVR|YE 0.080 . NCLIV_064640 93 VRYETPK|NS 0.068 . NCLIV_064640 96 ETPKNSR|NE 0.070 . NCLIV_064640 122 LEGVINK|YP 0.056 . NCLIV_064640 126 INKYPLR|DH 0.140 . NCLIV_064640 130 PLRDHGR|GL 0.114 . NCLIV_064640 133 DHGRGLR|NR 0.124 . NCLIV_064640 135 GRGLRNR|TV 0.177 . NCLIV_064640 153 PVVGVIK|SG 0.071 . NCLIV_064640 170 LPSTYFR|YK 0.130 . NCLIV_064640 172 STYFRYK|KG 0.065 . NCLIV_064640 173 TYFRYKK|GN 0.321 . ____________________________^_________________

  • Fasta :-

    >NCLIV_064640 ATGGATACTTACTTGAATAGAGGAAATGCAGTCATCTGCACCCTTCTAGCGGCTCTCGCC TTGGCGGCCCTTGGAAATCACTTTTCGACATATCTTCTGCAGGCCGATCCGATAGGAGAA GTTTCCATCGCGGAAGTGTATGAGTTCGGAGTCAACCATGCACTGCAAGGCGAGCAAGCA CAGGTGGCTCTGAATATCCAGGCAGACTTGACTAGTTGCTTCAATTGGAACACAAAGCAG CTTTTCGTCTACGTCATCGTCCGGTATGAGACGCCGAAGAACTCGCGAAACGAAGTGATT ATTTGGGATCATATCATAACGGATCCCGAGGATGCCGTTTTAGGTTTGGAGGGCGTTATC AATAAGTATCCTCTAAGAGACCATGGTCGGGGTCTCCGAAACCGAACTGTCACTGTTTCT CTTGAGTATGCATATCACCCGGTTGTGGGGGTTATCAAAAGTGGCCACGTCACCTCCTCC ACTTACACTCTTCCGTCCACGTATTTCCGCTACAAAAAGGGTAATTAG
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IDSitePeptideScoreMethod
NCLIV_06464091 TVRYETPKNS0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India