NCLIV_066590 | UPF0361 protein DC12 homolog, related

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_066590OTHER0.9649330.0011890.033878
No Results

  • Fasta :-

    >NCLIV_066590 MCGRMSCTLHPRRLRRIAGLVSSPLSASSESKKAEGTDSVEPAKSEESRCPVTVKHEAAA APAPSVPSSAATSHLAKTATKEETDTQEDKKIPPFSALSPSSSPSSSFSCAFPGETDAFD SHFPRPRFNVSPTCSVPIIEEATGQRRLRAARWYLRVPGQAPGANGEKALSYHTFNARAE GLTQSRLYRRLLDKRRCVVVADGFYEWKKPQSPGETKKQPFFIRYKSSVPDATIPKRRAE LGGIRNVQAGAPSEETPRAVCGKRERDGEETKTEQVEHKRPREQLQESPSETAACAPGKS AGWPSALKECEAPLLFAGLFDDDPLHAAGSSPETRDCSATILTMESSSTPMAEIHTRMPV LLSPEDASTWLNTEENAFSEIFPQLLSRSKQLYRTALQFYPVTPRVGNSRYESSDCVLPL SQGKDGGSRAPLPKSRGMRTLDFFLKPATEKKK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_066590.fa Sequence name : NCLIV_066590 Sequence length : 453 VALUES OF COMPUTED PARAMETERS Coef20 : 4.815 CoefTot : 0.872 ChDiff : 10 ZoneTo : 29 KR : 5 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 0.788 0.108 0.406 MesoH : -0.566 -0.003 -0.361 0.142 MuHd_075 : 16.232 6.991 3.507 3.990 MuHd_095 : 37.735 21.906 8.827 8.862 MuHd_100 : 34.702 23.075 8.065 8.945 MuHd_105 : 35.047 24.313 8.265 9.592 Hmax_075 : 10.033 3.200 -0.500 4.130 Hmax_095 : 8.838 14.100 2.909 3.150 Hmax_100 : 14.100 16.500 2.967 5.260 Hmax_105 : 13.300 15.700 2.635 5.260 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0225 0.9775 DFMC : 0.0378 0.9622 This protein is probably imported in mitochondria. f(Ser) = 0.2069 f(Arg) = 0.1724 CMi = 0.66445 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 453 NCLIV_066590 MCGRMSCTLHPRRLRRIAGLVSSPLSASSESKKAEGTDSVEPAKSEESRCPVTVKHEAAAAPAPSVPSSAATSHLAKTAT 80 KEETDTQEDKKIPPFSALSPSSSPSSSFSCAFPGETDAFDSHFPRPRFNVSPTCSVPIIEEATGQRRLRAARWYLRVPGQ 160 APGANGEKALSYHTFNARAEGLTQSRLYRRLLDKRRCVVVADGFYEWKKPQSPGETKKQPFFIRYKSSVPDATIPKRRAE 240 LGGIRNVQAGAPSEETPRAVCGKRERDGEETKTEQVEHKRPREQLQESPSETAACAPGKSAGWPSALKECEAPLLFAGLF 320 DDDPLHAAGSSPETRDCSATILTMESSSTPMAEIHTRMPVLLSPEDASTWLNTEENAFSEIFPQLLSRSKQLYRTALQFY 400 PVTPRVGNSRYESSDCVLPLSQGKDGGSRAPLPKSRGMRTLDFFLKPATEKKK 480 ...............P................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_066590 4 ---MCGR|MS 0.089 . NCLIV_066590 12 SCTLHPR|RL 0.085 . NCLIV_066590 13 CTLHPRR|LR 0.097 . NCLIV_066590 15 LHPRRLR|RI 0.182 . NCLIV_066590 16 HPRRLRR|IA 0.637 *ProP* NCLIV_066590 32 SASSESK|KA 0.088 . NCLIV_066590 33 ASSESKK|AE 0.138 . NCLIV_066590 44 DSVEPAK|SE 0.075 . NCLIV_066590 49 AKSEESR|CP 0.116 . NCLIV_066590 55 RCPVTVK|HE 0.066 . NCLIV_066590 77 ATSHLAK|TA 0.104 . NCLIV_066590 81 LAKTATK|EE 0.063 . NCLIV_066590 90 TDTQEDK|KI 0.060 . NCLIV_066590 91 DTQEDKK|IP 0.074 . NCLIV_066590 125 FDSHFPR|PR 0.114 . NCLIV_066590 127 SHFPRPR|FN 0.088 . NCLIV_066590 146 EEATGQR|RL 0.082 . NCLIV_066590 147 EATGQRR|LR 0.079 . NCLIV_066590 149 TGQRRLR|AA 0.427 . NCLIV_066590 152 RRLRAAR|WY 0.296 . NCLIV_066590 156 AARWYLR|VP 0.097 . NCLIV_066590 168 PGANGEK|AL 0.066 . NCLIV_066590 178 YHTFNAR|AE 0.085 . NCLIV_066590 186 EGLTQSR|LY 0.070 . NCLIV_066590 189 TQSRLYR|RL 0.377 . NCLIV_066590 190 QSRLYRR|LL 0.165 . NCLIV_066590 194 YRRLLDK|RR 0.064 . NCLIV_066590 195 RRLLDKR|RC 0.132 . NCLIV_066590 196 RLLDKRR|CV 0.169 . NCLIV_066590 208 DGFYEWK|KP 0.059 . NCLIV_066590 209 GFYEWKK|PQ 0.143 . NCLIV_066590 217 QSPGETK|KQ 0.056 . NCLIV_066590 218 SPGETKK|QP 0.110 . NCLIV_066590 224 KQPFFIR|YK 0.134 . NCLIV_066590 226 PFFIRYK|SS 0.067 . NCLIV_066590 236 PDATIPK|RR 0.056 . NCLIV_066590 237 DATIPKR|RA 0.175 . NCLIV_066590 238 ATIPKRR|AE 0.188 . NCLIV_066590 245 AELGGIR|NV 0.101 . NCLIV_066590 258 PSEETPR|AV 0.131 . NCLIV_066590 263 PRAVCGK|RE 0.098 . NCLIV_066590 264 RAVCGKR|ER 0.190 . NCLIV_066590 266 VCGKRER|DG 0.097 . NCLIV_066590 272 RDGEETK|TE 0.058 . NCLIV_066590 279 TEQVEHK|RP 0.074 . NCLIV_066590 280 EQVEHKR|PR 0.176 . NCLIV_066590 282 VEHKRPR|EQ 0.107 . NCLIV_066590 299 AACAPGK|SA 0.098 . NCLIV_066590 308 GWPSALK|EC 0.056 . NCLIV_066590 335 GSSPETR|DC 0.234 . NCLIV_066590 357 MAEIHTR|MP 0.073 . NCLIV_066590 388 FPQLLSR|SK 0.114 . NCLIV_066590 390 QLLSRSK|QL 0.060 . NCLIV_066590 394 RSKQLYR|TA 0.099 . NCLIV_066590 405 FYPVTPR|VG 0.065 . NCLIV_066590 410 PRVGNSR|YE 0.086 . NCLIV_066590 424 LPLSQGK|DG 0.069 . NCLIV_066590 429 GKDGGSR|AP 0.073 . NCLIV_066590 434 SRAPLPK|SR 0.106 . NCLIV_066590 436 APLPKSR|GM 0.097 . NCLIV_066590 439 PKSRGMR|TL 0.349 . NCLIV_066590 446 TLDFFLK|PA 0.071 . NCLIV_066590 451 LKPATEK|KK 0.061 . NCLIV_066590 452 KPATEKK|K- 0.125 . NCLIV_066590 453 PATEKKK|-- 0.105 . ____________________________^_________________

  • Fasta :-

    >NCLIV_066590 ATGTGCGGGCGAATGAGCTGCACGCTGCATCCTCGGCGTCTTCGTCGAATTGCGGGTCTC GTTTCCTCGCCACTTTCTGCATCTTCCGAGTCTAAGAAGGCCGAGGGAACGGACAGCGTC GAGCCCGCGAAGAGCGAGGAGTCTCGCTGCCCCGTAACCGTGAAGCACGAAGCAGCCGCG GCCCCTGCGCCTTCCGTCCCTTCCTCAGCCGCAACCTCGCACCTGGCTAAAACCGCAACG AAAGAAGAAACCGACACCCAAGAGGACAAAAAAATCCCACCCTTCTCTGCTCTTTCTCCC TCTTCTTCTCCCTCTTCCTCTTTTTCTTGCGCGTTTCCGGGTGAAACGGATGCGTTCGAC TCTCATTTTCCCCGCCCACGGTTCAACGTTTCCCCGACGTGCTCAGTGCCGATCATCGAG GAGGCGACTGGGCAGCGTCGCTTGCGAGCGGCTAGGTGGTATCTGAGGGTGCCGGGGCAA GCGCCCGGCGCAAACGGGGAAAAGGCGCTCTCCTACCATACTTTCAACGCGCGCGCAGAA GGCCTGACCCAGTCCCGACTCTATCGGAGACTCCTCGATAAGCGACGATGTGTCGTCGTC GCTGACGGCTTCTACGAGTGGAAGAAACCACAATCTCCGGGCGAAACGAAGAAACAGCCG TTTTTCATTCGGTACAAATCCTCTGTGCCAGATGCGACAATTCCAAAACGTCGCGCTGAA CTTGGCGGGATACGAAACGTCCAGGCAGGCGCGCCGAGCGAAGAGACGCCGAGGGCCGTT TGTGGGAAACGCGAGCGTGACGGAGAGGAGACGAAAACCGAGCAAGTCGAGCATAAAAGA CCGCGAGAACAGCTGCAAGAATCGCCTTCAGAGACTGCTGCATGCGCGCCGGGGAAAAGC GCTGGTTGGCCGAGCGCCCTGAAGGAGTGCGAAGCTCCTCTGCTGTTCGCGGGCCTCTTC GACGACGATCCGCTGCATGCAGCTGGATCCTCACCTGAGACGCGCGACTGCTCGGCGACA ATTCTGACCATGGAAAGCTCGAGCACGCCGATGGCGGAAATCCACACCAGGATGCCAGTC CTTCTGTCTCCGGAAGACGCCTCGACGTGGCTAAACACAGAGGAAAACGCCTTCTCGGAA ATCTTTCCGCAACTCCTCAGCCGCTCCAAACAGCTCTATCGCACGGCTCTTCAGTTTTAT CCGGTGACGCCGCGCGTGGGAAACAGCCGTTACGAGAGCTCGGACTGTGTCCTTCCTCTC TCTCAAGGAAAAGACGGCGGCTCAAGGGCGCCTCTGCCCAAATCTCGGGGGATGCGGACC CTCGACTTCTTCCTGAAGCCTGCCACGGAAAAGAAAAAATGA
  • Download Fasta

  • Fasta :-

    MCGRMSCTLHPRRLRRIAGLVSSPLSASSESKKAEGTDSVEPAKSEESRCPVTVKHEAAA APAPSVPSSAATSHLAKTATKEETDTQEDKKIPPFSALSPSSSPSSSFSCAFPGETDAFD SHFPRPRFNVSPTCSVPIIEEATGQRRLRAARWYLRVPGQAPGANGEKALSYHTFNARAE GLTQSRLYRRLLDKRRCVVVADGFYEWKKPQSPGETKKQPFFIRYKSSVPDATIPKRRAE LGGIRNVQAGAPSEETPRAVCGKRERDGEETKTEQVEHKRPREQLQESPSETAACAPGKS AGWPSALKECEAPLLFAGLFDDDPLHAAGSSPETRDCSATILTMESSSTPMAEIHTRMPV LLSPEDASTWLNTEENAFSEIFPQLLSRSKQLYRTALQFYPVTPRVGNSRYESSDCVLPL SQGKDGGSRAPLPKSRGMRTLDFFLKPATEKKK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_066590212 SKKPQSPGET0.997unspNCLIV_066590212 SKKPQSPGET0.997unspNCLIV_066590212 SKKPQSPGET0.997unspNCLIV_066590256 TPSEETPRAV0.993unspNCLIV_066590288 SQLQESPSET0.997unspNCLIV_066590363 SPVLLSPEDA0.997unspNCLIV_06659031 SASSESKKAE0.992unspNCLIV_06659099 SFSALSPSSS0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India