NF0005860 | glutaryl- mitochondrial-like

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  • Fasta :-

    >NF0005860 MLSSSRTLLQQLNTSSKGVSKNVGIIGLLANKNISRQFSTHSVQKKEQMVEFNWKDPLNV ESLLTDEEKEIRDQARNYCQSKLMPRILEANRKEFFDREILREMGEMGMLGITIQGYGCA GASQVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINTFGSEEQKQKYLPRLATGEIVGC FGLTEPNHGSDPGSMETKAKKSSCGKYYILNGSKMWITNSPIADIFVVWAKNLEEGGKIR GFILEKGMKGLTAPKIEGKMSLRASITGSISMDDVHVPVENMLPKAMGLSGPFSCLNSAR YGIAWGALGAAEFCFETARQYQLDRKQFGKPLAQNQLPQKKMADMLTEITLGLVSCVQLG RLKEKGEWAPEMISMLKRNNAGKALEIARICRDMLGGNGIADEYHVIRHAANLESVNTYE GTHDIHALILGRAITGLQAFK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0005860.fa Sequence name : NF0005860 Sequence length : 441 VALUES OF COMPUTED PARAMETERS Coef20 : 4.536 CoefTot : -0.559 ChDiff : 8 ZoneTo : 46 KR : 7 DE : 0 CleavSite : 46 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.353 1.247 0.210 0.530 MesoH : -0.315 0.288 -0.310 0.223 MuHd_075 : 46.042 30.527 14.216 10.522 MuHd_095 : 42.822 29.959 12.675 9.557 MuHd_100 : 40.515 29.920 12.090 9.430 MuHd_105 : 31.058 26.527 9.964 7.579 Hmax_075 : 9.333 12.833 0.741 4.480 Hmax_095 : 14.800 18.200 3.073 5.140 Hmax_100 : 12.800 18.200 2.233 5.140 Hmax_105 : 15.800 16.500 2.744 5.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0079 0.9921 DFMC : 0.0142 0.9858 This protein is probably imported in chloroplast. f(Ser) = 0.1957 f(Arg) = 0.0435 CMi = 1.49502 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 441 NF0005860 MLSSSRTLLQQLNTSSKGVSKNVGIIGLLANKNISRQFSTHSVQKKEQMVEFNWKDPLNVESLLTDEEKEIRDQARNYCQ 80 SKLMPRILEANRKEFFDREILREMGEMGMLGITIQGYGCAGASQVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINTFG 160 SEEQKQKYLPRLATGEIVGCFGLTEPNHGSDPGSMETKAKKSSCGKYYILNGSKMWITNSPIADIFVVWAKNLEEGGKIR 240 GFILEKGMKGLTAPKIEGKMSLRASITGSISMDDVHVPVENMLPKAMGLSGPFSCLNSARYGIAWGALGAAEFCFETARQ 320 YQLDRKQFGKPLAQNQLPQKKMADMLTEITLGLVSCVQLGRLKEKGEWAPEMISMLKRNNAGKALEIARICRDMLGGNGI 400 ADEYHVIRHAANLESVNTYEGTHDIHALILGRAITGLQAFK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0005860 6 -MLSSSR|TL 0.087 . NF0005860 17 QLNTSSK|GV 0.111 . NF0005860 21 SSKGVSK|NV 0.107 . NF0005860 32 IGLLANK|NI 0.064 . NF0005860 36 ANKNISR|QF 0.097 . NF0005860 45 STHSVQK|KE 0.072 . NF0005860 46 THSVQKK|EQ 0.176 . NF0005860 55 MVEFNWK|DP 0.070 . NF0005860 69 LLTDEEK|EI 0.068 . NF0005860 72 DEEKEIR|DQ 0.084 . NF0005860 76 EIRDQAR|NY 0.155 . NF0005860 82 RNYCQSK|LM 0.065 . NF0005860 86 QSKLMPR|IL 0.112 . NF0005860 92 RILEANR|KE 0.064 . NF0005860 93 ILEANRK|EF 0.085 . NF0005860 98 RKEFFDR|EI 0.122 . NF0005860 102 FDREILR|EM 0.101 . NF0005860 132 SYGLVAR|EV 0.170 . NF0005860 136 VAREVER|VD 0.093 . NF0005860 142 RVDSGYR|SA 0.136 . NF0005860 165 FGSEEQK|QK 0.060 . NF0005860 167 SEEQKQK|YL 0.072 . NF0005860 171 KQKYLPR|LA 0.127 . NF0005860 198 PGSMETK|AK 0.065 . NF0005860 200 SMETKAK|KS 0.080 . NF0005860 201 METKAKK|SS 0.162 . NF0005860 206 KKSSCGK|YY 0.074 . NF0005860 214 YILNGSK|MW 0.057 . NF0005860 231 IFVVWAK|NL 0.080 . NF0005860 238 NLEEGGK|IR 0.066 . NF0005860 240 EEGGKIR|GF 0.104 . NF0005860 246 RGFILEK|GM 0.056 . NF0005860 249 ILEKGMK|GL 0.062 . NF0005860 255 KGLTAPK|IE 0.057 . NF0005860 259 APKIEGK|MS 0.065 . NF0005860 263 EGKMSLR|AS 0.092 . NF0005860 285 VENMLPK|AM 0.080 . NF0005860 300 SCLNSAR|YG 0.112 . NF0005860 319 FCFETAR|QY 0.083 . NF0005860 325 RQYQLDR|KQ 0.082 . NF0005860 326 QYQLDRK|QF 0.095 . NF0005860 330 DRKQFGK|PL 0.076 . NF0005860 340 QNQLPQK|KM 0.066 . NF0005860 341 NQLPQKK|MA 0.115 . NF0005860 361 SCVQLGR|LK 0.112 . NF0005860 363 VQLGRLK|EK 0.059 . NF0005860 365 LGRLKEK|GE 0.080 . NF0005860 377 EMISMLK|RN 0.058 . NF0005860 378 MISMLKR|NN 0.220 . NF0005860 383 KRNNAGK|AL 0.097 . NF0005860 389 KALEIAR|IC 0.102 . NF0005860 392 EIARICR|DM 0.338 . NF0005860 408 DEYHVIR|HA 0.108 . NF0005860 432 HALILGR|AI 0.085 . NF0005860 441 TGLQAFK|-- 0.062 . ____________________________^_________________

  • Fasta :-

    >NF0005860 ATGCTATCATCATCACGCACTCTGCTCCAACAACTCAATACGAGCAGCAAAGGAGTCAGC AAGAATGTCGGTATTATTGGTCTTTTGGCCAACAAGAATATTTCTCGACAATTCTCCACT CATTCCGTTCAAAAGAAGGAACAAATGGTGGAGTTTAATTGGAAAGACCCACTCAATGTT GAGAGTTTATTAACTGATGAGGAGAAGGAAATTCGGGATCAAGCTCGCAATTATTGCCAA TCCAAATTAATGCCAAGAATTTTAGAAGCAAACCGAAAAGAGTTCTTTGATAGAGAAATT TTGAGAGAAATGGGAGAGATGGGCATGTTGGGAATCACCATTCAAGGATATGGATGTGCT GGAGCATCACAAGTGAGTTATGGTCTTGTTGCAAGAGAGGTTGAGAGAGTGGACAGTGGA TATCGTTCTGCCATGTCTGTTCAATCCTCTCTTGTAATGCATCCAATCAATACCTTCGGA AGTGAAGAACAAAAACAAAAGTATTTGCCAAGACTTGCAACAGGAGAAATTGTTGGATGT TTCGGTTTGACTGAGCCAAATCATGGTTCAGATCCAGGAAGTATGGAAACAAAAGCAAAG AAGTCATCTTGTGGAAAATACTATATTTTGAACGGTTCAAAGATGTGGATTACAAACTCT CCAATTGCTGACATTTTTGTTGTTTGGGCAAAGAATCTGGAAGAGGGTGGAAAGATTAGA GGTTTTATTTTGGAAAAAGGCATGAAAGGACTTACTGCACCAAAAATTGAAGGTAAAATG TCATTGAGAGCATCAATTACCGGATCTATTTCAATGGATGACGTTCATGTTCCAGTGGAA AACATGCTTCCAAAGGCAATGGGTTTGAGTGGTCCATTTTCATGCCTCAATAGTGCAAGA TATGGAATTGCATGGGGAGCTTTAGGTGCTGCCGAATTTTGCTTTGAAACTGCAAGACAA TATCAACTTGACAGAAAACAATTTGGAAAGCCATTAGCTCAAAATCAATTGCCTCAAAAG AAGATGGCTGACATGCTCACAGAAATTACTTTAGGTTTGGTGTCATGTGTGCAACTTGGA AGACTTAAGGAAAAAGGAGAATGGGCTCCTGAAATGATTTCCATGTTGAAGAGAAATAAC GCTGGAAAGGCTTTAGAAATTGCCAGAATTTGCAGAGATATGTTGGGAGGAAATGGTATT GCCGATGAGTATCATGTCATTAGACATGCTGCCAATCTTGAGTCTGTAAATACCTATGAG GGTACACATGACATCCATGCTTTAATTTTGGGTCGAGCAATTACAGGACTTCAAGCTTTC AAATAA
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  • Fasta :-

  • title: FAD binding site
  • coordinates: F181,L183,T184,G189,S190,W216,T218,S415,T422,D424
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IDSitePeptideScoreMethod
NF0005860139 SERVDSGYRS0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India