NF0005940 | atp-dependent zinc metalloprotease ftsh mitochondrial-like

_IDPredictionOTHERSPmTPCS_Position
NF0005940OTHER0.6263020.0000880.373610
No Results

  • Fasta :-

    >NF0005940 MFAHQGGIGSMMNSLMRKYQTSSSLLSGYSWTQIMEKMLERTGVMSNGGFNLRPSSLKNI LSVLHRFAPLQQESISFSSLPAQSFTMNENDTRYPIPRKTERRIFSKKNISLIITDMVTK RHYSSPKGFGNFKRKEQKEEEEPSKPKEETAKTEVKEEAKPSETISEKKEVKKGKKDESP KEEKKEEKKPQKIDITVPHLGDNVETAFITKWFKYPDDEVYEGEVICEVEVKYSDEETPQ RINIRAAEKGKIVSHDVKKGETVHSTLKLGTIKVKEEKKQEEVKKPAEEKPQEKRSLLDY MFYGMLLITAIMIAGAYQQLQQGTGYTASFDDFSKDLRNNNVRKITIHERSTTIHSKEGR EYSIGFGGDSFERRYYDLLEEFKQHGVAVSGVDIYYSGKEQKNFASTIQAAIHLLIIGSL LYYAYKRLPGRGGAGLGAMDPTNMFTKSFKATTQHTVKFKDVAGLDEAKREITEFVDFLK NPKKFRDIGARIPKGALLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPAR VRKLFKEAKENAPSIIFIDEIDAVGRQRGTGKFMGRNDERENTLNQLLVEMDGFTPATGV VVLAATNRSEILDKALTRPGRFDRSIDVNIADIKGREEIFKVHMKGIVLAKPADEYATRL ATLTPGFSGADIANVCNEAALIASREGADHVTMRHFEQAIDKVIGGLEKKNKVLSPEERN IVAHHEAGHAVAGWFLEHSDPLLKVSIVPRGSGALGYAQYLPSERYITTKEQLFDFMCLA LGGRAAEKIIFGHLSTGAQNDLQKVTEIAHSMITKYGMSETIGNVSFPDTNDGFQAEKPY SATTARAIDQEVKKMVVDAYNRTEQLLLKHKEGMIAIAKLLLDREKIDAQDMVDVLGRRP FESDAQFEAYLRTKDFQQQEEKEEQEAKKKSEENDEKQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0005940.fa Sequence name : NF0005940 Sequence length : 938 VALUES OF COMPUTED PARAMETERS Coef20 : 3.640 CoefTot : -0.839 ChDiff : 3 ZoneTo : 35 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.082 1.871 0.309 0.754 MesoH : -0.445 0.421 -0.354 0.249 MuHd_075 : 28.241 19.498 7.206 6.136 MuHd_095 : 26.033 20.109 6.816 6.951 MuHd_100 : 24.637 19.420 6.189 6.958 MuHd_105 : 24.180 21.323 6.154 7.345 Hmax_075 : 8.283 8.400 1.916 3.680 Hmax_095 : 14.875 12.300 1.776 4.357 Hmax_100 : 13.600 9.600 1.521 4.340 Hmax_105 : 13.600 9.600 1.521 4.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4165 0.5835 DFMC : 0.4039 0.5961 This protein is probably imported in chloroplast. f(Ser) = 0.2000 f(Arg) = 0.0286 CMi = 1.81818 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 938 NF0005940 MFAHQGGIGSMMNSLMRKYQTSSSLLSGYSWTQIMEKMLERTGVMSNGGFNLRPSSLKNILSVLHRFAPLQQESISFSSL 80 PAQSFTMNENDTRYPIPRKTERRIFSKKNISLIITDMVTKRHYSSPKGFGNFKRKEQKEEEEPSKPKEETAKTEVKEEAK 160 PSETISEKKEVKKGKKDESPKEEKKEEKKPQKIDITVPHLGDNVETAFITKWFKYPDDEVYEGEVICEVEVKYSDEETPQ 240 RINIRAAEKGKIVSHDVKKGETVHSTLKLGTIKVKEEKKQEEVKKPAEEKPQEKRSLLDYMFYGMLLITAIMIAGAYQQL 320 QQGTGYTASFDDFSKDLRNNNVRKITIHERSTTIHSKEGREYSIGFGGDSFERRYYDLLEEFKQHGVAVSGVDIYYSGKE 400 QKNFASTIQAAIHLLIIGSLLYYAYKRLPGRGGAGLGAMDPTNMFTKSFKATTQHTVKFKDVAGLDEAKREITEFVDFLK 480 NPKKFRDIGARIPKGALLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPARVRKLFKEAKENAPSIIFIDE 560 IDAVGRQRGTGKFMGRNDERENTLNQLLVEMDGFTPATGVVVLAATNRSEILDKALTRPGRFDRSIDVNIADIKGREEIF 640 KVHMKGIVLAKPADEYATRLATLTPGFSGADIANVCNEAALIASREGADHVTMRHFEQAIDKVIGGLEKKNKVLSPEERN 720 IVAHHEAGHAVAGWFLEHSDPLLKVSIVPRGSGALGYAQYLPSERYITTKEQLFDFMCLALGGRAAEKIIFGHLSTGAQN 800 DLQKVTEIAHSMITKYGMSETIGNVSFPDTNDGFQAEKPYSATTARAIDQEVKKMVVDAYNRTEQLLLKHKEGMIAIAKL 880 LLDREKIDAQDMVDVLGRRPFESDAQFEAYLRTKDFQQQEEKEEQEAKKKSEENDEKQ 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...............................................................P................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 .......................................................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0005940 17 MMNSLMR|KY 0.085 . NF0005940 18 MNSLMRK|YQ 0.097 . NF0005940 37 WTQIMEK|ML 0.073 . NF0005940 41 MEKMLER|TG 0.075 . NF0005940 53 NGGFNLR|PS 0.075 . NF0005940 58 LRPSSLK|NI 0.071 . NF0005940 66 ILSVLHR|FA 0.146 . NF0005940 93 MNENDTR|YP 0.083 . NF0005940 98 TRYPIPR|KT 0.149 . NF0005940 99 RYPIPRK|TE 0.068 . NF0005940 102 IPRKTER|RI 0.110 . NF0005940 103 PRKTERR|IF 0.219 . NF0005940 107 ERRIFSK|KN 0.072 . NF0005940 108 RRIFSKK|NI 0.206 . NF0005940 120 ITDMVTK|RH 0.059 . NF0005940 121 TDMVTKR|HY 0.201 . NF0005940 127 RHYSSPK|GF 0.080 . NF0005940 133 KGFGNFK|RK 0.069 . NF0005940 134 GFGNFKR|KE 0.252 . NF0005940 135 FGNFKRK|EQ 0.101 . NF0005940 138 FKRKEQK|EE 0.060 . NF0005940 145 EEEEPSK|PK 0.068 . NF0005940 147 EEPSKPK|EE 0.063 . NF0005940 152 PKEETAK|TE 0.066 . NF0005940 156 TAKTEVK|EE 0.059 . NF0005940 160 EVKEEAK|PS 0.066 . NF0005940 168 SETISEK|KE 0.057 . NF0005940 169 ETISEKK|EV 0.150 . NF0005940 172 SEKKEVK|KG 0.060 . NF0005940 173 EKKEVKK|GK 0.124 . NF0005940 175 KEVKKGK|KD 0.070 . NF0005940 176 EVKKGKK|DE 0.132 . NF0005940 181 KKDESPK|EE 0.067 . NF0005940 184 ESPKEEK|KE 0.060 . NF0005940 185 SPKEEKK|EE 0.089 . NF0005940 188 EEKKEEK|KP 0.067 . NF0005940 189 EKKEEKK|PQ 0.085 . NF0005940 192 EEKKPQK|ID 0.068 . NF0005940 211 ETAFITK|WF 0.058 . NF0005940 214 FITKWFK|YP 0.065 . NF0005940 232 ICEVEVK|YS 0.078 . NF0005940 241 DEETPQR|IN 0.075 . NF0005940 245 PQRINIR|AA 0.157 . NF0005940 249 NIRAAEK|GK 0.065 . NF0005940 251 RAAEKGK|IV 0.093 . NF0005940 258 IVSHDVK|KG 0.076 . NF0005940 259 VSHDVKK|GE 0.107 . NF0005940 268 TVHSTLK|LG 0.059 . NF0005940 273 LKLGTIK|VK 0.061 . NF0005940 275 LGTIKVK|EE 0.066 . NF0005940 278 IKVKEEK|KQ 0.065 . NF0005940 279 KVKEEKK|QE 0.099 . NF0005940 284 KKQEEVK|KP 0.067 . NF0005940 285 KQEEVKK|PA 0.175 . NF0005940 290 KKPAEEK|PQ 0.059 . NF0005940 294 EEKPQEK|RS 0.053 . NF0005940 295 EKPQEKR|SL 0.297 . NF0005940 335 SFDDFSK|DL 0.065 . NF0005940 338 DFSKDLR|NN 0.081 . NF0005940 343 LRNNNVR|KI 0.147 . NF0005940 344 RNNNVRK|IT 0.134 . NF0005940 350 KITIHER|ST 0.116 . NF0005940 357 STTIHSK|EG 0.061 . NF0005940 360 IHSKEGR|EY 0.173 . NF0005940 373 GGDSFER|RY 0.084 . NF0005940 374 GDSFERR|YY 0.243 . NF0005940 383 DLLEEFK|QH 0.065 . NF0005940 399 DIYYSGK|EQ 0.057 . NF0005940 402 YSGKEQK|NF 0.064 . NF0005940 426 LLYYAYK|RL 0.061 . NF0005940 427 LYYAYKR|LP 0.182 . NF0005940 431 YKRLPGR|GG 0.094 . NF0005940 447 PTNMFTK|SF 0.092 . NF0005940 450 MFTKSFK|AT 0.077 . NF0005940 458 TTQHTVK|FK 0.081 . NF0005940 460 QHTVKFK|DV 0.097 . NF0005940 469 AGLDEAK|RE 0.060 . NF0005940 470 GLDEAKR|EI 0.156 . NF0005940 480 EFVDFLK|NP 0.057 . NF0005940 483 DFLKNPK|KF 0.059 . NF0005940 484 FLKNPKK|FR 0.124 . NF0005940 486 KNPKKFR|DI 0.216 . NF0005940 491 FRDIGAR|IP 0.092 . NF0005940 494 IGARIPK|GA 0.167 . NF0005940 506 GPPGTGK|TL 0.060 . NF0005940 511 GKTLLAK|AV 0.077 . NF0005940 540 VGVGPAR|VR 0.065 . NF0005940 542 VGPARVR|KL 0.080 . NF0005940 543 GPARVRK|LF 0.289 . NF0005940 546 RVRKLFK|EA 0.079 . NF0005940 549 KLFKEAK|EN 0.070 . NF0005940 566 EIDAVGR|QR 0.111 . NF0005940 568 DAVGRQR|GT 0.115 . NF0005940 572 RQRGTGK|FM 0.085 . NF0005940 576 TGKFMGR|ND 0.095 . NF0005940 580 MGRNDER|EN 0.082 . NF0005940 608 VLAATNR|SE 0.089 . NF0005940 614 RSEILDK|AL 0.067 . NF0005940 618 LDKALTR|PG 0.074 . NF0005940 621 ALTRPGR|FD 0.218 . NF0005940 624 RPGRFDR|SI 0.699 *ProP* NF0005940 634 VNIADIK|GR 0.068 . NF0005940 636 IADIKGR|EE 0.102 . NF0005940 641 GREEIFK|VH 0.072 . NF0005940 645 IFKVHMK|GI 0.071 . NF0005940 651 KGIVLAK|PA 0.079 . NF0005940 659 ADEYATR|LA 0.079 . NF0005940 685 AALIASR|EG 0.077 . NF0005940 694 ADHVTMR|HF 0.184 . NF0005940 702 FEQAIDK|VI 0.071 . NF0005940 709 VIGGLEK|KN 0.055 . NF0005940 710 IGGLEKK|NK 0.071 . NF0005940 712 GLEKKNK|VL 0.096 . NF0005940 719 VLSPEER|NI 0.108 . NF0005940 744 HSDPLLK|VS 0.054 . NF0005940 750 KVSIVPR|GS 0.197 . NF0005940 765 QYLPSER|YI 0.108 . NF0005940 770 ERYITTK|EQ 0.064 . NF0005940 784 CLALGGR|AA 0.127 . NF0005940 788 GGRAAEK|II 0.082 . NF0005940 804 AQNDLQK|VT 0.077 . NF0005940 815 AHSMITK|YG 0.074 . NF0005940 838 DGFQAEK|PY 0.060 . NF0005940 846 YSATTAR|AI 0.199 . NF0005940 853 AIDQEVK|KM 0.052 . NF0005940 854 IDQEVKK|MV 0.167 . NF0005940 862 VVDAYNR|TE 0.062 . NF0005940 869 TEQLLLK|HK 0.068 . NF0005940 871 QLLLKHK|EG 0.060 . NF0005940 879 GMIAIAK|LL 0.061 . NF0005940 884 AKLLLDR|EK 0.093 . NF0005940 886 LLLDREK|ID 0.061 . NF0005940 898 MVDVLGR|RP 0.083 . NF0005940 899 VDVLGRR|PF 0.088 . NF0005940 912 QFEAYLR|TK 0.074 . NF0005940 914 EAYLRTK|DF 0.081 . NF0005940 922 FQQQEEK|EE 0.058 . NF0005940 928 KEEQEAK|KK 0.073 . NF0005940 929 EEQEAKK|KS 0.105 . NF0005940 930 EQEAKKK|SE 0.163 . NF0005940 937 SEENDEK|Q- 0.066 . ____________________________^_________________

  • Fasta :-

    >NF0005940 ATGTTTGCTCATCAAGGTGGTATCGGATCCATGATGAATTCATTGATGAGGAAGTACCAA ACATCATCATCTTTGCTAAGTGGATATTCATGGACACAGATCATGGAGAAAATGTTGGAG AGAACCGGAGTGATGAGTAATGGCGGATTCAATCTAAGACCATCATCCTTGAAGAATATT TTGTCTGTTTTGCATCGTTTTGCTCCTCTTCAACAAGAGAGCATATCCTTTTCATCATTG CCAGCTCAATCGTTTACAATGAACGAGAATGATACTAGATATCCAATTCCGAGAAAAACA GAAAGGAGAATATTTTCAAAGAAGAATATTAGTTTGATAATCACTGATATGGTTACCAAA AGACATTATTCATCCCCAAAGGGCTTCGGTAACTTTAAACGAAAGGAACAAAAAGAGGAA GAGGAACCATCGAAACCAAAAGAAGAAACTGCAAAAACCGAAGTCAAAGAAGAGGCAAAG CCTTCTGAAACTATTTCCGAAAAGAAAGAAGTAAAGAAAGGAAAGAAGGATGAATCACCA AAAGAAGAAAAAAAAGAGGAAAAGAAACCACAAAAGATTGACATTACCGTACCTCATTTG GGAGATAATGTTGAAACCGCGTTTATTACGAAATGGTTCAAGTATCCCGACGATGAAGTA TATGAAGGAGAGGTCATCTGTGAAGTTGAAGTCAAGTATTCTGACGAAGAGACACCACAA AGAATCAATATTAGAGCAGCCGAAAAGGGTAAAATTGTTTCTCATGATGTGAAAAAGGGT GAAACCGTTCACTCAACCTTGAAACTGGGTACTATTAAGGTCAAGGAGGAAAAGAAACAG GAAGAGGTGAAGAAACCAGCAGAAGAAAAGCCACAAGAAAAACGTAGTCTCTTGGACTAC ATGTTTTATGGAATGTTACTGATAACGGCTATTATGATTGCTGGTGCTTACCAACAATTA CAACAAGGCACAGGGTATACTGCGTCCTTTGATGACTTTAGTAAGGACCTTCGAAATAAC AATGTCCGTAAAATCACAATTCATGAACGCTCAACAACCATTCACTCAAAGGAGGGAAGA GAGTATAGTATTGGATTTGGAGGAGACAGTTTTGAAAGAAGATATTATGACCTACTTGAA GAATTTAAGCAACATGGAGTTGCTGTCTCTGGTGTGGATATTTACTACTCTGGAAAGGAG CAAAAGAACTTTGCTTCTACGATTCAGGCCGCCATTCATTTACTTATCATTGGTAGCTTG TTATATTATGCTTACAAACGATTGCCTGGAAGAGGAGGGGCAGGATTAGGAGCCATGGAC CCAACCAATATGTTTACCAAATCATTTAAGGCAACAACTCAACACACTGTTAAATTCAAA GATGTTGCTGGACTTGATGAGGCAAAGAGAGAAATCACTGAATTTGTGGACTTTTTAAAG AATCCAAAGAAGTTTAGAGATATTGGTGCTCGTATTCCAAAGGGTGCCTTATTAGTTGGA CCCCCAGGTACTGGTAAGACTTTGTTGGCAAAAGCTGTTGCAGGAGAAGCTGGGGTTCCT TTCTACAGTATTTCAGGTTCTGAATTTGTTGAAATGGTGGTTGGTGTTGGTCCTGCAAGA GTTCGAAAATTGTTCAAGGAAGCAAAGGAAAATGCTCCATCAATTATTTTCATTGACGAA ATTGATGCTGTGGGTCGACAAAGAGGAACAGGAAAATTTATGGGAAGAAATGATGAAAGA GAAAATACTCTGAACCAATTGCTTGTCGAAATGGATGGTTTTACTCCTGCAACTGGTGTT GTTGTTTTGGCAGCAACAAACAGATCCGAAATACTGGACAAGGCTCTCACTAGACCTGGT CGTTTCGACAGATCGATTGACGTGAATATTGCTGATATTAAGGGAAGAGAAGAAATTTTC AAAGTGCATATGAAAGGAATTGTGTTGGCAAAGCCTGCCGATGAATATGCCACGCGTCTT GCCACTCTCACTCCCGGTTTTTCTGGAGCTGATATTGCCAACGTTTGTAATGAAGCCGCT CTTATTGCCTCAAGAGAAGGTGCTGATCATGTCACCATGCGTCATTTTGAACAAGCAATC GATAAGGTCATTGGTGGATTGGAAAAGAAGAACAAAGTACTTTCTCCAGAGGAAAGAAAC ATTGTAGCACATCACGAAGCTGGTCATGCTGTTGCTGGATGGTTTTTGGAGCATAGTGAT CCACTTCTCAAGGTTTCCATTGTACCTAGAGGCTCAGGAGCATTAGGTTATGCACAATAC TTGCCTAGCGAAAGATATATTACAACTAAGGAACAATTATTCGACTTTATGTGTCTTGCT CTTGGCGGTAGAGCAGCAGAAAAAATCATTTTTGGCCACTTGTCTACAGGCGCTCAAAAC GATCTACAAAAGGTAACAGAAATTGCTCATTCCATGATTACCAAGTATGGAATGAGTGAG ACGATTGGAAATGTATCCTTCCCAGACACGAACGATGGGTTCCAAGCAGAAAAGCCTTAC AGTGCTACTACTGCAAGAGCTATTGATCAAGAAGTTAAAAAGATGGTGGTTGACGCCTAT AACAGAACAGAGCAGCTTTTACTTAAACACAAAGAAGGAATGATCGCAATTGCCAAGTTA TTGCTCGACAGAGAAAAAATTGATGCTCAAGATATGGTTGATGTGCTTGGAAGACGACCT TTCGAAAGTGATGCCCAATTCGAAGCCTATCTAAGAACCAAAGACTTCCAACAACAGGAA GAAAAAGAAGAGCAAGAAGCAAAGAAAAAGAGTGAAGAAAATGATGAAAAGCAATAA
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  • Fasta :-

    MFAHQGGIGSMMNSLMRKYQTSSSLLSGYSWTQIMEKMLERTGVMSNGGFNLRPSSLKNI LSVLHRFAPLQQESISFSSLPAQSFTMNENDTRYPIPRKTERRIFSKKNISLIITDMVTK RHYSSPKGFGNFKRKEQKEEEEPSKPKEETAKTEVKEEAKPSETISEKKEVKKGKKDESP KEEKKEEKKPQKIDITVPHLGDNVETAFITKWFKYPDDEVYEGEVICEVEVKYSDEETPQ RINIRAAEKGKIVSHDVKKGETVHSTLKLGTIKVKEEKKQEEVKKPAEEKPQEKRSLLDY MFYGMLLITAIMIAGAYQQLQQGTGYTASFDDFSKDLRNNNVRKITIHERSTTIHSKEGR EYSIGFGGDSFERRYYDLLEEFKQHGVAVSGVDIYYSGKEQKNFASTIQAAIHLLIIGSL LYYAYKRLPGRGGAGLGAMDPTNMFTKSFKATTQHTVKFKDVAGLDEAKREITEFVDFLK NPKKFRDIGARIPKGALLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPAR VRKLFKEAKENAPSIIFIDEIDAVGRQRGTGKFMGRNDERENTLNQLLVEMDGFTPATGV VVLAATNRSEILDKALTRPGRFDRSIDVNIADIKGREEIFKVHMKGIVLAKPADEYATRL ATLTPGFSGADIANVCNEAALIASREGADHVTMRHFEQAIDKVIGGLEKKNKVLSPEERN IVAHHEAGHAVAGWFLEHSDPLLKVSIVPRGSGALGYAQYLPSERYITTKEQLFDFMCLA LGGRAAEKIIFGHLSTGAQNDLQKVTEIAHSMITKYGMSETIGNVSFPDTNDGFQAEKPY SATTARAIDQEVKKMVVDAYNRTEQLLLKHKEGMIAIAKLLLDREKIDAQDMVDVLGRRP FESDAQFEAYLRTKDFQQQEEKEEQEAKKKSEENDEKQ

  • title: ATP binding site
  • coordinates: P501,P502,G503,T504,G505,K506,T507,L508,D559,N607
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0005940125 SRHYSSPKGF0.996unspNF0005940125 SRHYSSPKGF0.996unspNF0005940125 SRHYSSPKGF0.996unspNF0005940179 SKKDESPKEE0.998unspNF0005940234 SEVKYSDEET0.996unspNF0005940397 SDIYYSGKEQ0.994unspNF0005940715 SNKVLSPEER0.997unspNF0005940931 SAKKKSEEND0.996unspNF000594056 SLRPSSLKNI0.992unspNF0005940106 SRRIFSKKNI0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India