NF0005950 | gpi-anchor transamidase-like isoform x1

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0008233
Computed_GO_Functions: peptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0005950	SP	0.431973	0.556953	0.011074	CS pos: 40-41. VRA-QS. Pr: 0.9102

No Results

Fasta :-
>NF0005950 MTTSSSHRGNDQSSNNRRSTSVFFIVLIITSIIIIISVRAQSTTNTMVSSLSTEGPNTTR KLESLIEKFFSKSDPKASNTAHKHSNNWVVLIDTSRFWFNYRHVANTLSIYHIAKNLGIP DSQILLMLADDVACNPRNRFPGEVFNNKNRQKNLYGENVEVDYRGYEVTVENFFRVLTGR HHEAVPTSKRLMSDEHSNVLLFMTGHGGDEFFKFQDQEEINSADIADVIHQMSERRRFRE MLMIVDTCQAGSLFDKLYTPNVIAVGSSKRGENSYSHHSDLDIGVAVIDRFTYSSLEFFE NRDFRHYSPSLRNWFNSYTAESLHSTPNMRYDLYPRNLDTVPITDFFGSDIKIEFQDEQY PRGNATLLSSYKPVHTNEEYKIAFPSSNDTAVEAQETEVTFENNLSIVNKNIIALFIFGV LICLFLK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0005950.fa Sequence name : NF0005950 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.291 CoefTot : 0.808 ChDiff : -8 ZoneTo : 53 KR : 4 DE : 1 CleavSite : 41 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.659 3.276 0.652 1.035 MesoH : -0.479 0.225 -0.409 0.179 MuHd_075 : 26.527 13.860 6.585 5.531 MuHd_095 : 17.294 14.003 5.077 3.897 MuHd_100 : 26.023 13.867 5.921 4.393 MuHd_105 : 31.936 15.599 6.378 5.748 Hmax_075 : 0.000 18.783 -2.092 -0.933 Hmax_095 : -8.488 12.250 -5.017 4.008 Hmax_100 : 1.300 21.900 -4.082 4.630 Hmax_105 : -0.400 25.600 -2.732 0.790 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9855 0.0145 DFMC : 0.9632 0.0368

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 NF0005950 MTTSSSHRGNDQSSNNRRSTSVFFIVLIITSIIIIISVRAQSTTNTMVSSLSTEGPNTTRKLESLIEKFFSKSDPKASNT 80 AHKHSNNWVVLIDTSRFWFNYRHVANTLSIYHIAKNLGIPDSQILLMLADDVACNPRNRFPGEVFNNKNRQKNLYGENVE 160 VDYRGYEVTVENFFRVLTGRHHEAVPTSKRLMSDEHSNVLLFMTGHGGDEFFKFQDQEEINSADIADVIHQMSERRRFRE 240 MLMIVDTCQAGSLFDKLYTPNVIAVGSSKRGENSYSHHSDLDIGVAVIDRFTYSSLEFFENRDFRHYSPSLRNWFNSYTA 320 ESLHSTPNMRYDLYPRNLDTVPITDFFGSDIKIEFQDEQYPRGNATLLSSYKPVHTNEEYKIAFPSSNDTAVEAQETEVT 400 FENNLSIVNKNIIALFIFGVLICLFLK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0005950 8 TTSSSHR|GN 0.164 . NF0005950 17 DQSSNNR|RS 0.084 . NF0005950 18 QSSNNRR|ST 0.392 . NF0005950 39 IIIISVR|AQ 0.101 . NF0005950 60 EGPNTTR|KL 0.080 . NF0005950 61 GPNTTRK|LE 0.105 . NF0005950 68 LESLIEK|FF 0.083 . NF0005950 72 IEKFFSK|SD 0.082 . NF0005950 76 FSKSDPK|AS 0.070 . NF0005950 83 ASNTAHK|HS 0.072 . NF0005950 96 VLIDTSR|FW 0.098 . NF0005950 102 RFWFNYR|HV 0.114 . NF0005950 115 SIYHIAK|NL 0.080 . NF0005950 137 DVACNPR|NR 0.099 . NF0005950 139 ACNPRNR|FP 0.138 . NF0005950 148 GEVFNNK|NR 0.061 . NF0005950 150 VFNNKNR|QK 0.094 . NF0005950 152 NNKNRQK|NL 0.070 . NF0005950 164 NVEVDYR|GY 0.086 . NF0005950 175 TVENFFR|VL 0.096 . NF0005950 180 FRVLTGR|HH 0.127 . NF0005950 189 EAVPTSK|RL 0.066 . NF0005950 190 AVPTSKR|LM 0.165 . NF0005950 213 GGDEFFK|FQ 0.079 . NF0005950 235 IHQMSER|RR 0.085 . NF0005950 236 HQMSERR|RF 0.136 . NF0005950 237 QMSERRR|FR 0.171 . NF0005950 239 SERRRFR|EM 0.300 . NF0005950 256 AGSLFDK|LY 0.068 . NF0005950 269 IAVGSSK|RG 0.062 . NF0005950 270 AVGSSKR|GE 0.147 . NF0005950 290 GVAVIDR|FT 0.108 . NF0005950 302 LEFFENR|DF 0.106 . NF0005950 305 FENRDFR|HY 0.455 . NF0005950 312 HYSPSLR|NW 0.107 . NF0005950 330 HSTPNMR|YD 0.076 . NF0005950 336 RYDLYPR|NL 0.089 . NF0005950 352 FFGSDIK|IE 0.057 . NF0005950 362 QDEQYPR|GN 0.104 . NF0005950 372 TLLSSYK|PV 0.095 . NF0005950 381 HTNEEYK|IA 0.079 . NF0005950 410 NLSIVNK|NI 0.081 . NF0005950 427 LICLFLK|-- 0.061 . ____________________________^_________________

Fasta :-
>NF0005950 ATGACGACATCATCGTCGCATCGAGGGAATGATCAATCTTCCAACAATAGGAGGAGTACG AGTGTTTTTTTTATAGTACTGATAATAACATCCATCATCATCATCATTTCAGTGAGAGCA CAATCAACGACAAACACCATGGTTTCATCATTATCAACGGAAGGACCCAATACGACTCGC AAATTAGAATCTCTCATTGAAAAATTCTTTTCAAAATCCGATCCCAAGGCATCCAACACT GCTCATAAACATTCTAATAATTGGGTGGTACTGATTGATACAAGTAGATTTTGGTTCAAT TACAGACATGTTGCAAATACTCTCTCCATTTATCATATCGCTAAAAACTTGGGTATTCCC GATTCACAAATATTATTAATGTTGGCCGATGATGTAGCATGTAATCCTAGAAATAGATTC CCAGGAGAAGTATTCAATAATAAGAATAGGCAGAAAAATTTATATGGAGAAAATGTGGAA GTCGATTATCGAGGATATGAAGTAACAGTTGAAAATTTCTTTCGAGTACTTACAGGACGA CATCATGAAGCTGTTCCTACAAGTAAACGATTGATGAGTGATGAACATAGTAATGTTCTC TTATTTATGACTGGACACGGAGGTGATGAATTTTTCAAATTTCAAGATCAAGAGGAAATT AACAGTGCAGACATTGCAGATGTGATACATCAAATGTCTGAAAGAAGAAGATTTAGAGAA ATGCTCATGATTGTAGATACATGTCAAGCTGGATCTTTGTTTGACAAGTTATATACGCCA AATGTGATTGCAGTTGGAAGTAGCAAACGTGGAGAAAATTCATATTCTCATCATTCTGAT TTGGATATTGGAGTTGCAGTTATTGATAGATTTACTTATTCTTCTTTGGAGTTCTTTGAA AACCGTGATTTTAGACATTACTCTCCATCGTTGAGAAATTGGTTCAACTCATACACTGCC GAGTCATTGCATTCCACTCCAAACATGCGTTATGATCTCTATCCAAGAAATCTGGATACA GTACCCATTACAGACTTCTTCGGTTCTGATATTAAAATTGAATTCCAAGATGAGCAATAT CCAAGAGGAAATGCAACACTTCTTTCCAGTTATAAACCAGTTCACACCAATGAGGAATAC AAAATTGCTTTCCCATCATCAAATGACACAGCGGTAGAAGCCCAAGAAACAGAAGTCACT TTTGAGAATAATCTGTCCATTGTAAATAAGAACATTATTGCATTGTTTATTTTTGGAGTG TTAATTTGCTTATTTTTGAAATAA
Download Fasta

Fasta :-

MTTSSSHRGNDQSSNNRRSTSVFFIVLIITSIIIIISVRAQSTTNTMVSSLSTEGPNTTR KLESLIEKFFSKSDPKASNTAHKHSNNWVVLIDTSRFWFNYRHVANTLSIYHIAKNLGIP DSQILLMLADDVACNPRNRFPGEVFNNKNRQKNLYGENVEVDYRGYEVTVENFFRVLTGR HHEAVPTSKRLMSDEHSNVLLFMTGHGGDEFFKFQDQEEINSADIADVIHQMSERRRFRE MLMIVDTCQAGSLFDKLYTPNVIAVGSSKRGENSYSHHSDLDIGVAVIDRFTYSSLEFFE NRDFRHYSPSLRNWFNSYTAESLHSTPNMRYDLYPRNLDTVPITDFFGSDIKIEFQDEQY PRGNATLLSSYKPVHTNEEYKIAFPSSNDTAVEAQETEVTFENNLSIVNKNIIALFIFGV LICLFLK

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0005950	T	2	0.536	0.239	NF0005950	T	3	0.516	0.120

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0005950	T	2	0.536	0.239	NF0005950	T	3	0.516	0.120

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0005950	71 S	EKFFSKSDP	0.996	unsp	NF0005950	71 S	EKFFSKSDP	0.996	unsp	NF0005950	71 S	EKFFSKSDP	0.996	unsp	NF0005950	193 S	KRLMSDEHS	0.993	unsp	NF0005950	6 S	TTSSSHRGN	0.994	unsp	NF0005950	42 S	VRAQSTTNT	0.994	unsp

NF0005950 | gpi-anchor transamidase-like isoform x1

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0008233

Computed_GO_Functions: peptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India