NF0013330 | ubiquitin carboxyl-terminal hydrolase family protein

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0013330	OTHER	0.998490	0.000392	0.001118

No Results

Fasta :-
>NF0013330 MSCSQARPSSSRGIQLLSNPKYEVFPVLMQILSHLEPVANYALFGSNKRRRSDASSLKQQ EEVVDTTIHTRSPFFQAFDQLLEYIWKSHDDPQDPSEQQLMERFVQTLKEACDSLTDNPD IMELYTLIVSLLMFGHHELENEFCGEITTTLGVCPVCTFSKHPCVEKVPKLQASTQLWKN FETTGIMDFVVTESIDEYSCQVCSTVYNVLKSDFVSKPPEILVLQLDRFNFNFETFTVQK SHTLFPLNVKAPLSLRYYGQQGALIQQYDLVAIANHEGQGVNGVYSCCFWNTASHKWYTC HGNQLPIPFTQNLEYLISPANYLLFFTKKQAQEKTSFLRQFGNTDISFTFSE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0013330.fa Sequence name : NF0013330 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 4.259 CoefTot : -0.143 ChDiff : -11 ZoneTo : 22 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.347 1.365 0.377 0.575 MesoH : -0.308 0.296 -0.322 0.233 MuHd_075 : 21.900 5.658 4.656 3.627 MuHd_095 : 26.750 18.522 8.107 6.261 MuHd_100 : 25.670 21.250 9.462 6.267 MuHd_105 : 20.952 20.723 8.878 5.355 Hmax_075 : 6.650 0.350 0.065 2.217 Hmax_095 : 10.763 10.600 3.589 3.530 Hmax_100 : 11.700 10.600 3.589 3.830 Hmax_105 : 9.800 12.483 3.920 2.931 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4385 0.5615 DFMC : 0.5114 0.4886

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 NF0013330 MSCSQARPSSSRGIQLLSNPKYEVFPVLMQILSHLEPVANYALFGSNKRRRSDASSLKQQEEVVDTTIHTRSPFFQAFDQ 80 LLEYIWKSHDDPQDPSEQQLMERFVQTLKEACDSLTDNPDIMELYTLIVSLLMFGHHELENEFCGEITTTLGVCPVCTFS 160 KHPCVEKVPKLQASTQLWKNFETTGIMDFVVTESIDEYSCQVCSTVYNVLKSDFVSKPPEILVLQLDRFNFNFETFTVQK 240 SHTLFPLNVKAPLSLRYYGQQGALIQQYDLVAIANHEGQGVNGVYSCCFWNTASHKWYTCHGNQLPIPFTQNLEYLISPA 320 NYLLFFTKKQAQEKTSFLRQFGNTDISFTFSE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0013330 7 MSCSQAR|PS 0.114 . NF0013330 12 ARPSSSR|GI 0.086 . NF0013330 21 QLLSNPK|YE 0.053 . NF0013330 48 ALFGSNK|RR 0.056 . NF0013330 49 LFGSNKR|RR 0.113 . NF0013330 50 FGSNKRR|RS 0.202 . NF0013330 51 GSNKRRR|SD 0.398 . NF0013330 58 SDASSLK|QQ 0.078 . NF0013330 71 DTTIHTR|SP 0.101 . NF0013330 87 LLEYIWK|SH 0.077 . NF0013330 103 EQQLMER|FV 0.124 . NF0013330 109 RFVQTLK|EA 0.067 . NF0013330 161 PVCTFSK|HP 0.059 . NF0013330 167 KHPCVEK|VP 0.056 . NF0013330 170 CVEKVPK|LQ 0.060 . NF0013330 179 ASTQLWK|NF 0.064 . NF0013330 211 TVYNVLK|SD 0.088 . NF0013330 217 KSDFVSK|PP 0.071 . NF0013330 228 LVLQLDR|FN 0.087 . NF0013330 240 ETFTVQK|SH 0.066 . NF0013330 250 LFPLNVK|AP 0.052 . NF0013330 256 KAPLSLR|YY 0.125 . NF0013330 296 WNTASHK|WY 0.073 . NF0013330 328 YLLFFTK|KQ 0.066 . NF0013330 329 LLFFTKK|QA 0.118 . NF0013330 334 KKQAQEK|TS 0.065 . NF0013330 339 EKTSFLR|QF 0.094 . ____________________________^_________________

Fasta :-
>NF0013330 ATGTCATGTTCTCAAGCACGACCCTCATCATCACGAGGGATTCAACTCCTTTCCAATCCC AAGTATGAAGTGTTTCCGGTGCTCATGCAAATATTATCTCATTTGGAACCAGTGGCTAAT TATGCCTTGTTCGGATCGAATAAAAGACGACGATCCGATGCATCATCTTTGAAACAACAA GAAGAAGTTGTGGATACGACAATTCATACTCGATCGCCCTTTTTTCAAGCCTTTGATCAA TTACTGGAATATATTTGGAAGAGTCATGATGATCCTCAAGATCCATCAGAACAGCAATTA ATGGAAAGATTTGTACAAACGTTGAAGGAGGCTTGCGATTCTCTCACTGACAATCCTGAC ATAATGGAATTGTATACATTGATTGTATCCTTATTGATGTTTGGACATCATGAATTGGAA AACGAATTTTGTGGAGAAATCACTACCACTTTGGGAGTATGTCCTGTTTGTACTTTTTCA AAACATCCTTGTGTGGAGAAAGTTCCAAAGTTGCAAGCGTCCACTCAATTGTGGAAGAAC TTTGAGACAACTGGAATTATGGATTTTGTTGTGACTGAGAGCATTGATGAATATAGCTGT CAAGTGTGCAGCACAGTATACAATGTTCTAAAAAGTGACTTTGTTTCAAAACCACCTGAA ATATTGGTGTTACAATTAGATAGATTTAATTTCAATTTTGAAACATTTACTGTCCAAAAA TCTCATACACTGTTCCCATTGAATGTAAAAGCTCCTTTATCTTTAAGATATTATGGACAA CAAGGAGCATTAATACAACAGTATGATTTAGTTGCTATAGCAAATCATGAAGGACAGGGA GTGAATGGAGTTTATTCATGCTGCTTCTGGAATACTGCATCACATAAATGGTATACGTGC CACGGAAATCAACTTCCAATCCCCTTCACTCAGAATCTTGAATACCTAATATCTCCTGCA AATTATTTGCTCTTTTTTACTAAGAAACAAGCGCAAGAAAAAACATCCTTTTTACGACAA TTTGGAAATACTGACATTAGTTTTACATTTTCTGAATAA
Download Fasta

Fasta :-

MSCSQARPSSSRGIQLLSNPKYEVFPVLMQILSHLEPVANYALFGSNKRRRSDASSLKQQ EEVVDTTIHTRSPFFQAFDQLLEYIWKSHDDPQDPSEQQLMERFVQTLKEACDSLTDNPD IMELYTLIVSLLMFGHHELENEFCGEITTTLGVCPVCTFSKHPCVEKVPKLQASTQLWKN FETTGIMDFVVTESIDEYSCQVCSTVYNVLKSDFVSKPPEILVLQLDRFNFNFETFTVQK SHTLFPLNVKAPLSLRYYGQQGALIQQYDLVAIANHEGQGVNGVYSCCFWNTASHKWYTC HGNQLPIPFTQNLEYLISPANYLLFFTKKQAQEKTSFLRQFGNTDISFTFSE

Ubiquitin carboxyl-terminal hydrolase, UCH

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0013330	56 S	SDASSLKQQ	0.997	unsp	NF0013330	56 S	SDASSLKQQ	0.997	unsp	NF0013330	56 S	SDASSLKQQ	0.997	unsp	NF0013330	107 T	RFVQTLKEA	0.994	unsp	NF0013330	114 S	EACDSLTDN	0.991	unsp	NF0013330	9 S	QARPSSSRG	0.996	unsp	NF0013330	52 S	KRRRSDASS	0.995	unsp

NF0013330 | ubiquitin carboxyl-terminal hydrolase family protein

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ubiquitin carboxyl-terminal hydrolase, UCH

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India