NF0016360 | autophagy protein

UniProt_ID:

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	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0016360	OTHER	0.999888	0.000006	0.000107

No Results

Fasta :-
>NF0016360 MSQQQESLVPANRPKSTAQPKSFKEQKSLSERIEESRKVREKYPDRVPVICEKSAVEKDL PSIDKNKYLVPADLNVSQFVMVVRGRLSVDETTSLFFFVGKDVLLMQTDLMGSIYEKYKD EDGFLYISYSGQNTLGALE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0016360.fa Sequence name : NF0016360 Sequence length : 139 VALUES OF COMPUTED PARAMETERS Coef20 : 3.484 CoefTot : -1.098 ChDiff : -1 ZoneTo : 24 KR : 4 DE : 1 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.659 1.194 -0.153 0.456 MesoH : -0.924 0.228 -0.474 0.163 MuHd_075 : 15.831 14.580 5.682 3.574 MuHd_095 : 17.165 8.508 3.746 3.398 MuHd_100 : 14.209 9.350 3.073 3.297 MuHd_105 : 18.729 11.053 4.673 3.965 Hmax_075 : 3.967 6.600 -1.563 2.695 Hmax_095 : -1.750 1.400 -3.031 0.726 Hmax_100 : 0.600 1.400 -2.528 1.710 Hmax_105 : 2.683 3.400 -1.432 2.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9537 0.0463 DFMC : 0.9275 0.0725

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 139 NF0016360 MSQQQESLVPANRPKSTAQPKSFKEQKSLSERIEESRKVREKYPDRVPVICEKSAVEKDLPSIDKNKYLVPADLNVSQFV 80 MVVRGRLSVDETTSLFFFVGKDVLLMQTDLMGSIYEKYKDEDGFLYISYSGQNTLGALE 160 ................................................................................ 80 ........................................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0016360 13 SLVPANR|PK 0.114 . NF0016360 15 VPANRPK|ST 0.095 . NF0016360 21 KSTAQPK|SF 0.091 . NF0016360 24 AQPKSFK|EQ 0.056 . NF0016360 27 KSFKEQK|SL 0.107 . NF0016360 32 QKSLSER|IE 0.085 . NF0016360 37 ERIEESR|KV 0.122 . NF0016360 38 RIEESRK|VR 0.076 . NF0016360 40 EESRKVR|EK 0.304 . NF0016360 42 SRKVREK|YP 0.085 . NF0016360 46 REKYPDR|VP 0.076 . NF0016360 53 VPVICEK|SA 0.075 . NF0016360 58 EKSAVEK|DL 0.088 . NF0016360 65 DLPSIDK|NK 0.057 . NF0016360 67 PSIDKNK|YL 0.073 . NF0016360 84 QFVMVVR|GR 0.087 . NF0016360 86 VMVVRGR|LS 0.085 . NF0016360 101 LFFFVGK|DV 0.086 . NF0016360 117 MGSIYEK|YK 0.074 . NF0016360 119 SIYEKYK|DE 0.080 . ____________________________^_________________

Fasta :-
>NF0016360 ATGAGTCAACAACAAGAATCACTGGTTCCAGCCAATCGTCCCAAATCCACTGCTCAACCA AAGTCCTTCAAAGAGCAGAAATCCCTTTCGGAGAGAATTGAAGAATCACGAAAAGTGAGA GAGAAGTATCCAGATCGTGTTCCTGTAATTTGTGAGAAATCAGCCGTTGAAAAGGATTTA CCCTCCATTGATAAGAACAAGTATCTCGTTCCAGCCGATTTAAATGTTTCACAATTTGTC ATGGTTGTACGAGGAAGACTCTCCGTCGATGAAACCACCTCTCTCTTCTTTTTCGTTGGA AAGGATGTGCTTCTTATGCAGACGGATCTGATGGGATCCATCTATGAAAAGTACAAGGAC GAAGATGGATTTTTATACATTTCCTACTCGGGACAAAACACTTTGGGAGCTTTGGAATAA
Download Fasta

Fasta :-

MSQQQESLVPANRPKSTAQPKSFKEQKSLSERIEESRKVREKYPDRVPVICEKSAVEKDL PSIDKNKYLVPADLNVSQFVMVVRGRLSVDETTSLFFFVGKDVLLMQTDLMGSIYEKYKD EDGFLYISYSGQNTLGALE

GABARAP-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0016360	S	2	0.554	0.044	NF0016360	T	17	0.545	0.432	NF0016360	S	7	0.543	0.024

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0016360	S	2	0.554	0.044	NF0016360	T	17	0.545	0.432	NF0016360	S	7	0.543	0.024

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0016360	88 S	RGRLSVDET	0.997	unsp	NF0016360	88 S	RGRLSVDET	0.997	unsp	NF0016360	88 S	RGRLSVDET	0.997	unsp	NF0016360	16 S	NRPKSTAQP	0.994	unsp	NF0016360	22 S	AQPKSFKEQ	0.998	unsp

NF0016360 | autophagy protein

ID's

UniProt_ID:

GEO Functions

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Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

GABARAP-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India