NF0021290 | ubiquitin carboxyl-terminal hydrolase 22

_IDPredictionOTHERSPmTPCS_Position
NF0021290OTHER0.9999670.0000090.000025
No Results

  • Fasta :-

    >NF0021290 MKKSTRKRTSNTSKASSNGNGDKVEQSLSVASSDAAIIEADAVSAIQMTTFPKSLQCSHF RDFVKCKAKRKHNGNCIANGHIGIDDYEELVGLNENLIDLGNGKLKFEQTQHCTCCENPF SLIDEAVICSNCYHIFTVHTFYEKKSSFEKAEPKQLKYCPNCKDNAIVFHLTYKEFFCLE CFDFITLDFEAIKYILLPCLFKSANQELPNEKQATSTKKKRKFSHPKSGTETVPHISVGE SIKSMLKNNVQTQTNPLIGLRGIVNLGNTCFMNCILQTLAHNVSLRNYYLSGVYSQLIEK EIENDSKCKNFEDIQTYLKMSRAMNNLFKEMYDKSCNELENSNIKKRSSNGKRKSDTVDE QPIVLPYVPHQFLYIMWNIAGHLAGYQQQDAHEFYMAILSALTPAKLPNNRRNLIEDLFT GTSQSDLNCKICSSISSTVEAFMDISLPLKAKSGDTWIELESLTECLERYTRDENLDISS YSCKNCGSQGNFSKQIRFKRLPYVLCFHLKRFEHSEVNRNRRTAGVSSKIDWFVSFPLQI EMKDFVVGEDGGVPDNKYSLFSVVCHHGDLSGGHYTCYVKHNSRWFLCNDSSVYYAKESD VLNSEAYLLFYERAR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0021290.fa Sequence name : NF0021290 Sequence length : 615 VALUES OF COMPUTED PARAMETERS Coef20 : 4.355 CoefTot : -0.383 ChDiff : 4 ZoneTo : 21 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.418 0.086 0.587 MesoH : -0.468 0.170 -0.386 0.175 MuHd_075 : 25.414 12.432 7.350 4.964 MuHd_095 : 37.915 15.239 11.169 5.507 MuHd_100 : 29.228 12.814 9.242 4.623 MuHd_105 : 24.361 11.003 8.264 4.295 Hmax_075 : -0.933 -2.800 -2.973 -0.793 Hmax_095 : 0.000 -3.800 -2.750 -1.356 Hmax_100 : -0.600 -3.700 -2.315 -0.810 Hmax_105 : 7.933 -1.750 0.069 0.898 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2998 0.7002 DFMC : 0.2958 0.7042 This protein is probably imported in chloroplast. f(Ser) = 0.2381 f(Arg) = 0.0952 CMi = 1.17096 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 615 NF0021290 MKKSTRKRTSNTSKASSNGNGDKVEQSLSVASSDAAIIEADAVSAIQMTTFPKSLQCSHFRDFVKCKAKRKHNGNCIANG 80 HIGIDDYEELVGLNENLIDLGNGKLKFEQTQHCTCCENPFSLIDEAVICSNCYHIFTVHTFYEKKSSFEKAEPKQLKYCP 160 NCKDNAIVFHLTYKEFFCLECFDFITLDFEAIKYILLPCLFKSANQELPNEKQATSTKKKRKFSHPKSGTETVPHISVGE 240 SIKSMLKNNVQTQTNPLIGLRGIVNLGNTCFMNCILQTLAHNVSLRNYYLSGVYSQLIEKEIENDSKCKNFEDIQTYLKM 320 SRAMNNLFKEMYDKSCNELENSNIKKRSSNGKRKSDTVDEQPIVLPYVPHQFLYIMWNIAGHLAGYQQQDAHEFYMAILS 400 ALTPAKLPNNRRNLIEDLFTGTSQSDLNCKICSSISSTVEAFMDISLPLKAKSGDTWIELESLTECLERYTRDENLDISS 480 YSCKNCGSQGNFSKQIRFKRLPYVLCFHLKRFEHSEVNRNRRTAGVSSKIDWFVSFPLQIEMKDFVVGEDGGVPDNKYSL 560 FSVVCHHGDLSGGHYTCYVKHNSRWFLCNDSSVYYAKESDVLNSEAYLLFYERAR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..........................P..................................................... 400 ................................................................................ 480 .........................................P...................................... 560 ....................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ NF0021290 2 -----MK|KS 0.067 . NF0021290 3 ----MKK|ST 0.162 . NF0021290 6 -MKKSTR|KR 0.078 . NF0021290 7 MKKSTRK|RT 0.081 . NF0021290 8 KKSTRKR|TS 0.320 . NF0021290 14 RTSNTSK|AS 0.098 . NF0021290 23 SNGNGDK|VE 0.057 . NF0021290 53 QMTTFPK|SL 0.077 . NF0021290 61 LQCSHFR|DF 0.099 . NF0021290 65 HFRDFVK|CK 0.066 . NF0021290 67 RDFVKCK|AK 0.079 . NF0021290 69 FVKCKAK|RK 0.069 . NF0021290 70 VKCKAKR|KH 0.142 . NF0021290 71 KCKAKRK|HN 0.110 . NF0021290 104 IDLGNGK|LK 0.059 . NF0021290 106 LGNGKLK|FE 0.076 . NF0021290 144 VHTFYEK|KS 0.056 . NF0021290 145 HTFYEKK|SS 0.130 . NF0021290 150 KKSSFEK|AE 0.076 . NF0021290 154 FEKAEPK|QL 0.065 . NF0021290 157 AEPKQLK|YC 0.066 . NF0021290 163 KYCPNCK|DN 0.074 . NF0021290 174 VFHLTYK|EF 0.061 . NF0021290 193 LDFEAIK|YI 0.055 . NF0021290 202 LLPCLFK|SA 0.099 . NF0021290 212 QELPNEK|QA 0.058 . NF0021290 218 KQATSTK|KK 0.063 . NF0021290 219 QATSTKK|KR 0.080 . NF0021290 220 ATSTKKK|RK 0.126 . NF0021290 221 TSTKKKR|KF 0.231 . NF0021290 222 STKKKRK|FS 0.161 . NF0021290 227 RKFSHPK|SG 0.097 . NF0021290 243 SVGESIK|SM 0.078 . NF0021290 247 SIKSMLK|NN 0.057 . NF0021290 261 NPLIGLR|GI 0.088 . NF0021290 286 AHNVSLR|NY 0.098 . NF0021290 300 YSQLIEK|EI 0.060 . NF0021290 307 EIENDSK|CK 0.061 . NF0021290 309 ENDSKCK|NF 0.082 . NF0021290 319 DIQTYLK|MS 0.060 . NF0021290 322 TYLKMSR|AM 0.080 . NF0021290 329 AMNNLFK|EM 0.068 . NF0021290 334 FKEMYDK|SC 0.084 . NF0021290 345 LENSNIK|KR 0.062 . NF0021290 346 ENSNIKK|RS 0.133 . NF0021290 347 NSNIKKR|SS 0.528 *ProP* NF0021290 352 KRSSNGK|RK 0.092 . NF0021290 353 RSSNGKR|KS 0.354 . NF0021290 354 SSNGKRK|SD 0.179 . NF0021290 406 SALTPAK|LP 0.060 . NF0021290 411 AKLPNNR|RN 0.066 . NF0021290 412 KLPNNRR|NL 0.152 . NF0021290 430 QSDLNCK|IC 0.065 . NF0021290 450 DISLPLK|AK 0.065 . NF0021290 452 SLPLKAK|SG 0.097 . NF0021290 469 LTECLER|YT 0.101 . NF0021290 472 CLERYTR|DE 0.160 . NF0021290 484 ISSYSCK|NC 0.100 . NF0021290 494 SQGNFSK|QI 0.072 . NF0021290 497 NFSKQIR|FK 0.090 . NF0021290 499 SKQIRFK|RL 0.073 . NF0021290 500 KQIRFKR|LP 0.394 . NF0021290 510 VLCFHLK|RF 0.074 . NF0021290 511 LCFHLKR|FE 0.160 . NF0021290 519 EHSEVNR|NR 0.107 . NF0021290 521 SEVNRNR|RT 0.090 . NF0021290 522 EVNRNRR|TA 0.572 *ProP* NF0021290 529 TAGVSSK|ID 0.064 . NF0021290 543 PLQIEMK|DF 0.088 . NF0021290 557 GGVPDNK|YS 0.064 . NF0021290 580 HYTCYVK|HN 0.058 . NF0021290 584 YVKHNSR|WF 0.072 . NF0021290 597 SSVYYAK|ES 0.070 . NF0021290 613 YLLFYER|AR 0.073 . NF0021290 615 LFYERAR|-- 0.094 . ____________________________^_________________

  • Fasta :-

    >NF0021290 ATGAAAAAATCGACAAGGAAGAGGACTAGTAATACTAGTAAAGCAAGCAGTAATGGGAAT GGAGATAAAGTAGAGCAAAGCCTTTCTGTTGCGAGTAGTGATGCTGCCATCATAGAAGCA GATGCTGTATCTGCCATTCAAATGACGACTTTCCCAAAAAGTCTACAATGCTCTCATTTT AGGGACTTTGTCAAATGTAAGGCAAAACGAAAGCATAATGGCAATTGTATTGCAAATGGT CATATTGGCATTGATGATTATGAGGAACTGGTTGGATTGAATGAAAATTTAATAGACCTT GGGAATGGAAAATTGAAATTCGAACAGACACAGCATTGTACATGTTGTGAAAACCCCTTC TCTTTGATAGATGAGGCAGTAATTTGTTCCAATTGTTACCACATTTTCACAGTTCATACA TTTTATGAGAAAAAGTCCTCTTTTGAGAAAGCCGAACCGAAACAACTCAAATATTGTCCT AATTGCAAAGATAATGCGATTGTGTTTCACTTAACCTATAAGGAATTCTTTTGCCTTGAG TGTTTTGATTTTATTACTCTCGATTTTGAAGCAATCAAGTATATCCTATTACCTTGCCTT TTCAAATCTGCAAATCAAGAATTGCCAAATGAAAAACAAGCGACAAGCACAAAGAAAAAA CGAAAATTTTCACATCCTAAAAGTGGAACTGAAACTGTACCTCACATTTCTGTTGGAGAG TCCATCAAGTCCATGCTGAAGAACAACGTGCAAACACAAACGAATCCTCTTATTGGACTA CGAGGAATTGTAAACTTGGGAAATACTTGCTTTATGAATTGTATATTACAGACACTAGCC CATAATGTGTCACTACGCAACTATTATTTATCAGGAGTTTATTCTCAGTTAATTGAAAAA GAAATTGAAAATGACTCCAAATGTAAAAATTTTGAAGATATTCAAACATACTTGAAAATG AGTAGAGCCATGAATAACTTATTCAAAGAAATGTACGATAAATCATGCAACGAATTAGAA AATTCGAATATCAAAAAGAGATCCAGTAACGGAAAAAGAAAATCCGATACAGTAGACGAA CAACCAATAGTTTTACCATACGTTCCTCATCAGTTTCTATACATTATGTGGAATATTGCT GGACACTTGGCAGGCTATCAACAGCAAGATGCACACGAGTTTTACATGGCCATCCTCTCG GCCCTTACTCCTGCCAAACTTCCTAACAACCGTAGAAACCTTATTGAAGATTTATTCACT GGAACCTCTCAGTCAGATTTAAATTGCAAAATTTGTTCAAGCATCTCTTCGACGGTGGAA GCATTTATGGACATTTCTCTTCCTCTCAAAGCCAAGAGCGGTGACACGTGGATAGAATTA GAATCCTTAACAGAATGTCTTGAAAGATATACAAGAGATGAAAATTTAGATATCAGTAGT TACTCGTGTAAAAATTGTGGATCACAAGGGAACTTTTCAAAACAGATTCGCTTTAAACGG CTGCCATATGTTCTTTGTTTTCATCTTAAAAGGTTTGAACATTCAGAAGTTAACAGAAAT CGAAGGACTGCAGGAGTAAGCTCTAAGATTGATTGGTTTGTTTCATTTCCTTTGCAAATT GAAATGAAAGATTTCGTGGTTGGCGAGGATGGTGGTGTTCCTGATAACAAGTACTCACTC TTCTCCGTGGTTTGTCACCATGGAGATTTGAGTGGAGGACACTACACGTGCTATGTCAAA CATAACTCACGTTGGTTTTTATGTAATGACTCGAGTGTATATTACGCCAAAGAGTCAGAC GTTTTGAATTCGGAGGCTTATTTACTCTTTTATGAGAGAGCACGTTGA
  • Download Fasta

  • Fasta :-

    MKKSTRKRTSNTSKASSNGNGDKVEQSLSVASSDAAIIEADAVSAIQMTTFPKSLQCSHF RDFVKCKAKRKHNGNCIANGHIGIDDYEELVGLNENLIDLGNGKLKFEQTQHCTCCENPF SLIDEAVICSNCYHIFTVHTFYEKKSSFEKAEPKQLKYCPNCKDNAIVFHLTYKEFFCLE CFDFITLDFEAIKYILLPCLFKSANQELPNEKQATSTKKKRKFSHPKSGTETVPHISVGE SIKSMLKNNVQTQTNPLIGLRGIVNLGNTCFMNCILQTLAHNVSLRNYYLSGVYSQLIEK EIENDSKCKNFEDIQTYLKMSRAMNNLFKEMYDKSCNELENSNIKKRSSNGKRKSDTVDE QPIVLPYVPHQFLYIMWNIAGHLAGYQQQDAHEFYMAILSALTPAKLPNNRRNLIEDLFT GTSQSDLNCKICSSISSTVEAFMDISLPLKAKSGDTWIELESLTECLERYTRDENLDISS YSCKNCGSQGNFSKQIRFKRLPYVLCFHLKRFEHSEVNRNRRTAGVSSKIDWFVSFPLQI EMKDFVVGEDGGVPDNKYSLFSVVCHHGDLSGGHYTCYVKHNSRWFLCNDSSVYYAKESD VLNSEAYLLFYERAR

  • title: Active Site
  • coordinates: N265,C270,H574,D590
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0021290147 SEKKSSFEKA0.993unspNF0021290147 SEKKSSFEKA0.993unspNF0021290147 SEKKSSFEKA0.993unspNF0021290216 SKQATSTKKK0.994unspNF0021290224 SKRKFSHPKS0.991unspNF0021290228 SSHPKSGTET0.997unspNF0021290349 SKKRSSNGKR0.995unspNF0021290528 SAGVSSKIDW0.993unspNF002129010 SRKRTSNTSK0.994unspNF002129017 SSKASSNGNG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India