NF0023760 | archaemetzincin-2 isoform x1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008270      

  • Computed_GO_Functions:  zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0023760OTHER0.8209170.0018490.177235
No Results

  • Fasta :-

    >NF0023760 MPKFSYKSSCKSFSSCIWNKFTMFGFFFLQQKKMPRKQQRAKKIPFAKGFTRPNKQEIKQ AIGSKDISYDFEMKRPSDGKSLFYKLVPDPTSIDDWLAQYVEDRDSYDEWMELRKRVCKK NSIQLEKDICLVWLERENTNHPRKQFMVHLKRFIEAFYFGIHVRILDPFVIKKSKNQYYI EFNDAKYNISSRRCHEYDEEQAGENEIQFRAADVLVPIHRLKKTIEKEISCICGVTMEDL FIGKKDSFTCGLAQGGDHIGVFSMCRYNPAFRSEENSTEEKNISVEWESDGIVDVEKLSS NDLIIIERCCKIVVHELAHMQQIGHCVYFDCIMNGSGWLEEDYRQSIHLCPVDLRKFQTL MNFDILERYKALLRFYKEYHMNEAALWVQDMIQYLTTSQQENNGDGSNKERPVSPVNSYN SSSKKSKIK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0023760.fa Sequence name : NF0023760 Sequence length : 429 VALUES OF COMPUTED PARAMETERS Coef20 : 4.231 CoefTot : -2.474 ChDiff : 5 ZoneTo : 56 KR : 14 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.482 1.118 0.052 0.543 MesoH : -1.207 0.156 -0.481 0.133 MuHd_075 : 31.660 16.735 9.598 6.512 MuHd_095 : 37.073 21.081 11.786 6.924 MuHd_100 : 33.647 19.014 8.898 6.318 MuHd_105 : 38.845 17.153 8.494 7.972 Hmax_075 : 1.400 1.400 -2.522 1.855 Hmax_095 : -3.400 13.800 2.728 0.710 Hmax_100 : 6.100 10.700 4.054 2.660 Hmax_105 : 4.000 13.913 -2.822 2.080 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0328 0.9672 DFMC : 0.0147 0.9853 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.0536 CMi = 0.73892 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 429 NF0023760 MPKFSYKSSCKSFSSCIWNKFTMFGFFFLQQKKMPRKQQRAKKIPFAKGFTRPNKQEIKQAIGSKDISYDFEMKRPSDGK 80 SLFYKLVPDPTSIDDWLAQYVEDRDSYDEWMELRKRVCKKNSIQLEKDICLVWLERENTNHPRKQFMVHLKRFIEAFYFG 160 IHVRILDPFVIKKSKNQYYIEFNDAKYNISSRRCHEYDEEQAGENEIQFRAADVLVPIHRLKKTIEKEISCICGVTMEDL 240 FIGKKDSFTCGLAQGGDHIGVFSMCRYNPAFRSEENSTEEKNISVEWESDGIVDVEKLSSNDLIIIERCCKIVVHELAHM 320 QQIGHCVYFDCIMNGSGWLEEDYRQSIHLCPVDLRKFQTLMNFDILERYKALLRFYKEYHMNEAALWVQDMIQYLTTSQQ 400 ENNGDGSNKERPVSPVNSYNSSSKKSKIK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0023760 3 ----MPK|FS 0.072 . NF0023760 7 MPKFSYK|SS 0.140 . NF0023760 11 SYKSSCK|SF 0.086 . NF0023760 20 SSCIWNK|FT 0.086 . NF0023760 32 FFFLQQK|KM 0.056 . NF0023760 33 FFLQQKK|MP 0.095 . NF0023760 36 QQKKMPR|KQ 0.087 . NF0023760 37 QKKMPRK|QQ 0.088 . NF0023760 40 MPRKQQR|AK 0.122 . NF0023760 42 RKQQRAK|KI 0.073 . NF0023760 43 KQQRAKK|IP 0.391 . NF0023760 48 KKIPFAK|GF 0.078 . NF0023760 52 FAKGFTR|PN 0.110 . NF0023760 55 GFTRPNK|QE 0.127 . NF0023760 59 PNKQEIK|QA 0.073 . NF0023760 65 KQAIGSK|DI 0.089 . NF0023760 74 SYDFEMK|RP 0.063 . NF0023760 75 YDFEMKR|PS 0.150 . NF0023760 80 KRPSDGK|SL 0.089 . NF0023760 85 GKSLFYK|LV 0.086 . NF0023760 104 AQYVEDR|DS 0.120 . NF0023760 114 DEWMELR|KR 0.069 . NF0023760 115 EWMELRK|RV 0.097 . NF0023760 116 WMELRKR|VC 0.110 . NF0023760 119 LRKRVCK|KN 0.206 . NF0023760 120 RKRVCKK|NS 0.179 . NF0023760 127 NSIQLEK|DI 0.071 . NF0023760 136 CLVWLER|EN 0.071 . NF0023760 143 ENTNHPR|KQ 0.087 . NF0023760 144 NTNHPRK|QF 0.112 . NF0023760 151 QFMVHLK|RF 0.069 . NF0023760 152 FMVHLKR|FI 0.262 . NF0023760 164 YFGIHVR|IL 0.095 . NF0023760 172 LDPFVIK|KS 0.059 . NF0023760 173 DPFVIKK|SK 0.157 . NF0023760 175 FVIKKSK|NQ 0.066 . NF0023760 186 IEFNDAK|YN 0.072 . NF0023760 192 KYNISSR|RC 0.086 . NF0023760 193 YNISSRR|CH 0.173 . NF0023760 210 ENEIQFR|AA 0.132 . NF0023760 220 VLVPIHR|LK 0.089 . NF0023760 222 VPIHRLK|KT 0.073 . NF0023760 223 PIHRLKK|TI 0.445 . NF0023760 227 LKKTIEK|EI 0.069 . NF0023760 244 EDLFIGK|KD 0.054 . NF0023760 245 DLFIGKK|DS 0.100 . NF0023760 266 GVFSMCR|YN 0.083 . NF0023760 272 RYNPAFR|SE 0.136 . NF0023760 281 ENSTEEK|NI 0.072 . NF0023760 297 GIVDVEK|LS 0.065 . NF0023760 308 DLIIIER|CC 0.080 . NF0023760 311 IIERCCK|IV 0.166 . NF0023760 344 WLEEDYR|QS 0.078 . NF0023760 355 LCPVDLR|KF 0.072 . NF0023760 356 CPVDLRK|FQ 0.080 . NF0023760 368 NFDILER|YK 0.065 . NF0023760 370 DILERYK|AL 0.058 . NF0023760 374 RYKALLR|FY 0.078 . NF0023760 377 ALLRFYK|EY 0.148 . NF0023760 409 NGDGSNK|ER 0.058 . NF0023760 411 DGSNKER|PV 0.198 . NF0023760 424 SYNSSSK|KS 0.068 . NF0023760 425 YNSSSKK|SK 0.264 . NF0023760 427 SSSKKSK|IK 0.091 . NF0023760 429 SKKSKIK|-- 0.078 . ____________________________^_________________

  • Fasta :-

    >NF0023760 ATGCCAAAATTTTCGTACAAGAGTTCATGTAAATCATTTTCATCATGTATTTGGAACAAG TTTACAATGTTTGGATTCTTTTTTCTTCAACAGAAAAAAATGCCACGAAAACAACAACGA GCCAAAAAGATTCCATTCGCCAAAGGCTTCACGCGACCAAACAAACAAGAAATCAAACAA GCCATCGGATCTAAGGATATTAGTTATGATTTTGAAATGAAACGACCCTCCGATGGAAAA AGCTTATTTTATAAACTGGTTCCAGATCCAACTTCAATTGATGATTGGTTGGCTCAGTAT GTTGAGGATAGAGACAGCTATGACGAATGGATGGAGTTAAGAAAGAGAGTTTGTAAGAAA AATAGCATCCAATTAGAGAAAGATATTTGTTTAGTATGGCTCGAAAGAGAAAACACCAAT CATCCAAGAAAGCAGTTCATGGTTCATTTGAAAAGATTCATTGAAGCTTTTTATTTTGGT ATCCATGTTAGAATTTTAGATCCGTTTGTGATTAAGAAGTCAAAAAATCAATACTATATT GAGTTTAATGATGCAAAATACAACATTTCATCTCGAAGGTGTCACGAGTATGATGAGGAA CAAGCAGGAGAGAATGAAATACAATTCAGAGCCGCGGACGTTCTTGTCCCTATTCACAGG CTGAAAAAAACAATCGAAAAAGAAATATCGTGCATATGTGGAGTTACTATGGAGGACCTT TTTATTGGAAAAAAGGACAGTTTTACGTGTGGTTTAGCTCAAGGAGGTGATCATATTGGA GTGTTTTCAATGTGTAGATACAATCCAGCATTTAGAAGTGAAGAAAACTCTACAGAAGAA AAAAACATTTCAGTGGAATGGGAAAGTGATGGTATTGTTGACGTGGAAAAACTGTCCTCA AATGATTTGATCATCATTGAGAGGTGTTGTAAAATTGTTGTACATGAATTAGCTCATATG CAGCAGATAGGACATTGTGTGTATTTTGATTGTATCATGAATGGTAGCGGATGGTTAGAG GAAGATTACCGTCAGTCCATTCATCTTTGCCCAGTAGATTTACGAAAGTTTCAAACCCTC ATGAATTTTGACATTCTTGAAAGGTATAAGGCCTTACTAAGATTTTACAAGGAATATCAC ATGAATGAGGCTGCGCTGTGGGTGCAAGACATGATACAATATTTGACCACGAGTCAACAA GAAAACAATGGCGATGGTAGTAATAAGGAACGGCCCGTCTCCCCTGTCAATAGTTATAAT TCCTCTTCCAAGAAATCTAAAATCAAGTAA
  • Download Fasta

  • Fasta :-

    MPKFSYKSSCKSFSSCIWNKFTMFGFFFLQQKKMPRKQQRAKKIPFAKGFTRPNKQEIKQ AIGSKDISYDFEMKRPSDGKSLFYKLVPDPTSIDDWLAQYVEDRDSYDEWMELRKRVCKK NSIQLEKDICLVWLERENTNHPRKQFMVHLKRFIEAFYFGIHVRILDPFVIKKSKNQYYI EFNDAKYNISSRRCHEYDEEQAGENEIQFRAADVLVPIHRLKKTIEKEISCICGVTMEDL FIGKKDSFTCGLAQGGDHIGVFSMCRYNPAFRSEENSTEEKNISVEWESDGIVDVEKLSS NDLIIIERCCKIVVHELAHMQQIGHCVYFDCIMNGSGWLEEDYRQSIHLCPVDLRKFQTL MNFDILERYKALLRFYKEYHMNEAALWVQDMIQYLTTSQQENNGDGSNKERPVSPVNSYN SSSKKSKIK

    No Results
  • title: active site
  • coordinates: F248,C250,H315,E316,H319,H325,C326,C331,M333,C350,D353
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0023760277 SSEENSTEEK0.995unspNF0023760277 SSEENSTEEK0.995unspNF0023760277 SSEENSTEEK0.995unspNF0023760414 SERPVSPVNS0.997unspNF002376077 SMKRPSDGKS0.992unspNF0023760106 SEDRDSYDEW0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India