NF0026960 | rhomboid family protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0026960mTP0.4027780.0003270.596896CS pos: 50-51. TTS-TT. Pr: 0.1501
No Results

  • Fasta :-

    >NF0026960 MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKV VVMRTIADPPMMDRRRLLDFGINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMK GVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASSNVLWNMKKQLFKSKFFKNSR TILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMP MTRRLLWPAYIFCGLVASSVYLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVH PFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVSASGHLGGALGGYLFYLMNRK RLLF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0026960.fa Sequence name : NF0026960 Sequence length : 424 VALUES OF COMPUTED PARAMETERS Coef20 : 4.424 CoefTot : 0.473 ChDiff : 28 ZoneTo : 67 KR : 10 DE : 0 CleavSite : 74 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 2.359 0.348 0.774 MesoH : 0.685 0.893 -0.067 0.474 MuHd_075 : 29.184 19.719 7.752 7.021 MuHd_095 : 40.330 32.722 12.576 10.057 MuHd_100 : 48.498 35.695 14.746 11.889 MuHd_105 : 47.914 32.706 14.256 11.268 Hmax_075 : 15.100 15.100 2.614 4.630 Hmax_095 : 17.588 20.738 4.711 5.731 Hmax_100 : 19.500 24.500 5.503 6.730 Hmax_105 : 16.500 20.000 4.402 6.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0107 0.9893 DFMC : 0.0098 0.9902 This protein is probably imported in chloroplast. f(Ser) = 0.2090 f(Arg) = 0.0746 CMi = 1.19760 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 424 NF0026960 MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKVVVMRTIADPPMMDRRRLLDF 80 GINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMKGVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASS 160 NVLWNMKKQLFKSKFFKNSRTILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV 240 FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMPMTRRLLWPAYIFCGLVASSV 320 YLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVHPFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVS 400 ASGHLGGALGGYLFYLMNRKRLLF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0026960 2 -----MK|GL 0.083 . NF0026960 9 GLSSSLR|IY 0.139 . NF0026960 13 SLRIYSK|LR 0.064 . NF0026960 15 RIYSKLR|NC 0.081 . NF0026960 20 LRNCLQK|ML 0.076 . NF0026960 23 CLQKMLK|LV 0.070 . NF0026960 38 SGISFSR|RG 0.097 . NF0026960 39 GISFSRR|GG 0.163 . NF0026960 59 NTPSMLK|VV 0.053 . NF0026960 64 LKVVVMR|TI 0.115 . NF0026960 74 DPPMMDR|RR 0.061 . NF0026960 75 PPMMDRR|RL 0.137 . NF0026960 76 PMMDRRR|LL 0.180 . NF0026960 91 QFSFFSR|MN 0.118 . NF0026960 100 DLYHHDR|KK 0.091 . NF0026960 101 LYHHDRK|KM 0.084 . NF0026960 102 YHHDRKK|MI 0.147 . NF0026960 108 KMIYQSK|SN 0.077 . NF0026960 111 YQSKSNR|MM 0.116 . NF0026960 120 SSLNLMK|GV 0.087 . NF0026960 167 NVLWNMK|KQ 0.052 . NF0026960 168 VLWNMKK|QL 0.102 . NF0026960 172 MKKQLFK|SK 0.081 . NF0026960 174 KQLFKSK|FF 0.074 . NF0026960 177 FKSKFFK|NS 0.090 . NF0026960 180 KFFKNSR|TI 0.070 . NF0026960 187 TILIPHK|LE 0.060 . NF0026960 196 MSWEELK|RK 0.058 . NF0026960 197 SWEELKR|KI 0.273 . NF0026960 198 WEELKRK|IS 0.086 . NF0026960 207 NVFGGHR|YS 0.077 . NF0026960 226 GEGSGFR|FT 0.097 . NF0026960 232 RFTNIQK|II 0.057 . NF0026960 250 ANLFLTR|QD 0.078 . NF0026960 265 VSLDNIK|HG 0.056 . NF0026960 268 DNIKHGK|IY 0.070 . NF0026960 297 ALSQLGK|MM 0.067 . NF0026960 303 KMMPMTR|RL 0.070 . NF0026960 304 MMPMTRR|LL 0.122 . NF0026960 325 SVYLLDK|WI 0.069 . NF0026960 334 GSTALHR|PH 0.091 . NF0026960 375 FLPIQFK|LR 0.056 . NF0026960 377 PIQFKLR|NF 0.104 . NF0026960 390 IAIECYR|WY 0.076 . NF0026960 395 YRWYTNR|DS 0.153 . NF0026960 419 LFYLMNR|KR 0.062 . NF0026960 420 FYLMNRK|RL 0.060 . NF0026960 421 YLMNRKR|LL 0.170 . ____________________________^_________________

  • Fasta :-

    >NF0026960 ATGAAAGGCCTTTCATCATCATTAAGAATTTATTCGAAATTGAGGAATTGCTTACAAAAA ATGTTGAAACTCGTTTCTTCTTCTTCTTCATTTAGTGGTATCAGCTTTTCGAGAAGAGGA GGAATTCTTTTTCATGGCACAACAACAAGCACCACTAACACTCCATCCATGTTGAAAGTG GTGGTGATGAGAACGATTGCTGATCCACCGATGATGGACCGTCGTCGGTTGTTGGATTTT GGAATTAATCATCAATTTTCATTCTTCTCTCGGATGAATGATCTTTATCATCATGATAGG AAGAAGATGATTTATCAATCAAAATCCAATAGGATGATGAGTTCGTTGAATTTGATGAAG GGAGTAAGCCTTGATCAACCCGAGTCAAGCCACCACCATCATCATCATCATCTTTTATTA AATTCTAGTTATGAACATCCTCTCGGAGGAATCATTGGTAGTCTCTATCAAGCCTCTTCA AATGTATTATGGAACATGAAAAAACAGTTATTCAAATCTAAATTCTTCAAGAATTCAAGA ACGATTCTAATACCACATAAACTTGAGATGAGTTGGGAAGAATTGAAAAGAAAGATTTCA AATGTATTTGGAGGTCATCGATATTCCTATTACGAATACAGTAGCTATGGAAGTGGAGGA GAAGGAAGTGGATTCCGATTTACGAATATTCAAAAAATCATTGCTTTGAATGTGGCTGTG TTTGTCTTGGCTAATTTATTCCTCACACGACAAGACATTCTTGCTAATTTGGGAGTTTCA TTGGACAATATCAAACATGGCAAAATTTACACCATGTTCACAAGCATGTTTACACATATT GATTTAATTCATATATTCATGAACATGTATGCATTGAGTCAATTAGGAAAAATGATGCCC ATGACTAGAAGATTATTGTGGCCAGCTTATATTTTCTGTGGTCTAGTGGCGTCTTCTGTT TATTTACTTGATAAATGGATTGGAAGTACTGCACTTCATCGACCCCATGAATACTATACC ACTGGTATTGGAGCCAGCGGAGCCATATTTGGTTTGTTAGCGTTTGTGACACAAGTACAT CCCTTCATTCCAGTAGGCATCTTCTTTTTACCCATCCAATTTAAATTAAGGAATTTCTTT TATGGTGTCATTGCCATTGAGTGCTATCGTTGGTACACGAACAGAGATTCATCCGTGAGT GCGAGTGGCCACTTGGGAGGAGCTTTGGGAGGATACTTGTTCTACCTGATGAATCGTAAG AGACTTCTTTTTTAA
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  • Fasta :-

    MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKV VVMRTIADPPMMDRRRLLDFGINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMK GVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASSNVLWNMKKQLFKSKFFKNSR TILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMP MTRRLLWPAYIFCGLVASSVYLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVH PFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVSASGHLGGALGGYLFYLMNRK RLLF

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0026960218 SSSYGSGGEG0.991unspNF0026960218 SSSYGSGGEG0.991unspNF0026960218 SSSYGSGGEG0.991unspNF0026960398 SNRDSSVSAS0.997unspNF0026960191 SKLEMSWEEL0.995unspNF0026960209 SGHRYSYYEY0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India