NF0028900 | cathepsin f

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0008234
Computed_GO_Functions: cysteine-type peptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0028900	OTHER	0.959004	0.012271	0.028726

No Results

Fasta :-
>NF0028900 MGLNRASIWTFQSSSVTLRIEFTSIEPIEKMFSSLSYPTIISLVLASLMMCISCTTATVA AADPITSSSTHSRTSTQSSYQPLSVDEMKSLFLQFTHKHNKFYQGPKEYQQRFEIFSQNV EKSRQMNLLEGRNTYGVTKFSDLSPEEFKKYYLMEPKTPQLMMSSGVNRNGVLPISRVSQ QQVRDAPKSWDWRDHGAVTYVKNQGQCGSCWAFSATGNIEGQWYLKTKKLKALSGKFSYF IIYSSTTTTNSNNNHPHSIIPSTITIIIPTIIISWNNNRTTTCRL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0028900.fa Sequence name : NF0028900 Sequence length : 285 VALUES OF COMPUTED PARAMETERS Coef20 : 4.920 CoefTot : 0.564 ChDiff : 11 ZoneTo : 20 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.112 0.537 0.773 MesoH : 0.470 0.578 -0.094 0.266 MuHd_075 : 27.477 15.273 6.932 6.609 MuHd_095 : 25.225 10.465 6.238 4.178 MuHd_100 : 31.223 11.464 7.292 5.122 MuHd_105 : 29.318 10.730 6.769 5.108 Hmax_075 : 12.483 8.050 1.602 3.698 Hmax_095 : 12.513 8.313 1.557 3.579 Hmax_100 : 12.900 7.400 1.269 2.940 Hmax_105 : 13.800 11.900 1.505 4.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7136 0.2864 DFMC : 0.6681 0.3319

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 285 NF0028900 MGLNRASIWTFQSSSVTLRIEFTSIEPIEKMFSSLSYPTIISLVLASLMMCISCTTATVAAADPITSSSTHSRTSTQSSY 80 QPLSVDEMKSLFLQFTHKHNKFYQGPKEYQQRFEIFSQNVEKSRQMNLLEGRNTYGVTKFSDLSPEEFKKYYLMEPKTPQ 160 LMMSSGVNRNGVLPISRVSQQQVRDAPKSWDWRDHGAVTYVKNQGQCGSCWAFSATGNIEGQWYLKTKKLKALSGKFSYF 240 IIYSSTTTTNSNNNHPHSIIPSTITIIIPTIIISWNNNRTTTCRL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0028900 5 --MGLNR|AS 0.090 . NF0028900 19 SSSVTLR|IE 0.113 . NF0028900 30 SIEPIEK|MF 0.057 . NF0028900 73 SSSTHSR|TS 0.148 . NF0028900 89 LSVDEMK|SL 0.099 . NF0028900 98 FLQFTHK|HN 0.063 . NF0028900 101 FTHKHNK|FY 0.069 . NF0028900 107 KFYQGPK|EY 0.064 . NF0028900 112 PKEYQQR|FE 0.106 . NF0028900 122 FSQNVEK|SR 0.082 . NF0028900 124 QNVEKSR|QM 0.087 . NF0028900 132 MNLLEGR|NT 0.089 . NF0028900 139 NTYGVTK|FS 0.068 . NF0028900 149 LSPEEFK|KY 0.061 . NF0028900 150 SPEEFKK|YY 0.123 . NF0028900 157 YYLMEPK|TP 0.056 . NF0028900 169 MSSGVNR|NG 0.080 . NF0028900 177 GVLPISR|VS 0.078 . NF0028900 184 VSQQQVR|DA 0.152 . NF0028900 188 QVRDAPK|SW 0.095 . NF0028900 193 PKSWDWR|DH 0.202 . NF0028900 202 GAVTYVK|NQ 0.070 . NF0028900 226 EGQWYLK|TK 0.053 . NF0028900 228 QWYLKTK|KL 0.067 . NF0028900 229 WYLKTKK|LK 0.072 . NF0028900 231 LKTKKLK|AL 0.092 . NF0028900 236 LKALSGK|FS 0.082 . NF0028900 279 ISWNNNR|TT 0.086 . NF0028900 284 NRTTTCR|L- 0.090 . ____________________________^_________________

Fasta :-
>NF0028900 ATGGGACTGAACCGAGCTTCAATATGGACATTCCAGTCTAGCTCTGTAACACTCAGAATT GAATTCACCTCCATCGAACCTATCGAAAAAATGTTCTCATCATTATCTTATCCAACCATC ATTTCTCTCGTGCTCGCATCTCTCATGATGTGCATTTCTTGTACAACCGCTACTGTTGCT GCTGCTGATCCAATAACCTCGAGTAGTACTCATAGTCGTACAAGTACTCAATCCTCCTAT CAACCTCTCTCTGTGGATGAAATGAAATCTCTCTTCCTACAATTCACTCACAAACACAAC AAATTCTATCAAGGTCCAAAAGAATATCAACAACGTTTCGAAATCTTTTCACAAAATGTT GAAAAGAGTCGTCAAATGAACCTTTTGGAAGGTCGCAACACTTATGGAGTCACTAAATTC AGTGATCTCTCACCTGAAGAATTTAAAAAGTATTACTTGATGGAACCAAAAACTCCACAA TTGATGATGAGCAGTGGTGTGAATCGAAATGGAGTGTTGCCAATTTCTAGAGTTTCACAA CAACAAGTTCGTGATGCTCCAAAGTCATGGGATTGGAGAGATCATGGTGCTGTGACCTAT GTCAAGAATCAAGGTCAATGTGGAAGTTGTTGGGCTTTCTCTGCAACAGGTAACATTGAA GGTCAATGGTATTTAAAAACCAAGAAACTTAAGGCTCTCTCAGGTAAGTTCTCTTATTTC ATCATCTACTCTTCAACAACAACAACAAATTCCAACAATAACCATCCTCATTCCATCATT CCATCAACAATTACAATCATTATTCCAACAATAATCATTTCATGGAATAACAACAGAACA ACAACTTGTCGATTGTGA
Download Fasta

Fasta :-

MGLNRASIWTFQSSSVTLRIEFTSIEPIEKMFSSLSYPTIISLVLASLMMCISCTTATVA AADPITSSSTHSRTSTQSSYQPLSVDEMKSLFLQFTHKHNKFYQGPKEYQQRFEIFSQNV EKSRQMNLLEGRNTYGVTKFSDLSPEEFKKYYLMEPKTPQLMMSSGVNRNGVLPISRVSQ QQVRDAPKSWDWRDHGAVTYVKNQGQCGSCWAFSATGNIEGQWYLKTKKLKALSGKFSYF IIYSSTTTTNSNNNHPHSIIPSTITIIIPTIIISWNNNRTTTCRL

Papain-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0028900	T	70	0.693	0.021	NF0028900	T	66	0.628	0.078	NF0028900	T	74	0.609	0.019	NF0028900	T	76	0.592	0.040	NF0028900	S	67	0.585	0.246	NF0028900	S	68	0.571	0.024	NF0028900	S	69	0.570	0.020	NF0028900	S	72	0.545	0.030	NF0028900	S	75	0.517	0.026

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0028900	T	70	0.693	0.021	NF0028900	T	66	0.628	0.078	NF0028900	T	74	0.609	0.019	NF0028900	T	76	0.592	0.040	NF0028900	S	67	0.585	0.246	NF0028900	S	68	0.571	0.024	NF0028900	S	69	0.570	0.020	NF0028900	S	72	0.545	0.030	NF0028900	S	75	0.517	0.026

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0028900	144 S	FSDLSPEEF	0.998	unsp	NF0028900	144 S	FSDLSPEEF	0.998	unsp	NF0028900	144 S	FSDLSPEEF	0.998	unsp	NF0028900	234 S	LKALSGKFS	0.993	unsp	NF0028900	75 S	HSRTSTQSS	0.996	unsp	NF0028900	84 S	YQPLSVDEM	0.991	unsp

NF0028900 | cathepsin f

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0008234

Computed_GO_Functions: cysteine-type peptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Papain-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India