NF0038120 | 26s proteasome non-atpase regulatory subunit 9

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0005515
Computed_GO_Functions: protein binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0038120	OTHER	0.999950	0.000005	0.000045

No Results

Fasta :-
>NF0038120 MMYSPAAAYEEGYVQYQIPSRPTKITTTFVKQLIAIKDAMEKEIRDLMLSLDKVGVGLKT PLVDDEGFPRADLDLNDIRSKRHRIACLQNDHISLMNDIQNFLYELHEESRANAQPSTTS PNIAQSSSSMDTSNDEEEQLEPFLKVNTVSPNSPAEKAGLHPGDEITQFGYLVKKDIKNN GLKILPTVVQSNVNKPMKVHLLREEGSTKVKKEIILVPSYWSGQGLLGCHFLEIH
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0038120.fa Sequence name : NF0038120 Sequence length : 235 VALUES OF COMPUTED PARAMETERS Coef20 : 3.067 CoefTot : -0.032 ChDiff : -6 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.053 1.076 0.051 0.501 MesoH : -1.285 -0.114 -0.628 0.083 MuHd_075 : 13.757 7.804 5.002 2.731 MuHd_095 : 8.538 6.644 1.112 1.237 MuHd_100 : 10.210 5.363 1.742 0.319 MuHd_105 : 11.907 7.651 2.367 1.427 Hmax_075 : 7.583 8.283 1.246 4.037 Hmax_095 : 5.000 5.163 -0.779 2.765 Hmax_100 : 7.800 4.500 -0.524 3.020 Hmax_105 : 5.133 9.900 -0.199 3.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9817 0.0183 DFMC : 0.9639 0.0361

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 235 NF0038120 MMYSPAAAYEEGYVQYQIPSRPTKITTTFVKQLIAIKDAMEKEIRDLMLSLDKVGVGLKTPLVDDEGFPRADLDLNDIRS 80 KRHRIACLQNDHISLMNDIQNFLYELHEESRANAQPSTTSPNIAQSSSSMDTSNDEEEQLEPFLKVNTVSPNSPAEKAGL 160 HPGDEITQFGYLVKKDIKNNGLKILPTVVQSNVNKPMKVHLLREEGSTKVKKEIILVPSYWSGQGLLGCHFLEIH 240 ................................................................................ 80 .P.............................................................................. 160 ........................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0038120 21 QYQIPSR|PT 0.083 . NF0038120 24 IPSRPTK|IT 0.236 . NF0038120 31 ITTTFVK|QL 0.073 . NF0038120 37 KQLIAIK|DA 0.073 . NF0038120 42 IKDAMEK|EI 0.065 . NF0038120 45 AMEKEIR|DL 0.104 . NF0038120 53 LMLSLDK|VG 0.049 . NF0038120 59 KVGVGLK|TP 0.052 . NF0038120 70 DDEGFPR|AD 0.078 . NF0038120 79 LDLNDIR|SK 0.101 . NF0038120 81 LNDIRSK|RH 0.057 . NF0038120 82 NDIRSKR|HR 0.532 *ProP* NF0038120 84 IRSKRHR|IA 0.218 . NF0038120 111 ELHEESR|AN 0.083 . NF0038120 145 QLEPFLK|VN 0.064 . NF0038120 157 PNSPAEK|AG 0.068 . NF0038120 174 QFGYLVK|KD 0.059 . NF0038120 175 FGYLVKK|DI 0.112 . NF0038120 178 LVKKDIK|NN 0.061 . NF0038120 183 IKNNGLK|IL 0.068 . NF0038120 195 VQSNVNK|PM 0.071 . NF0038120 198 NVNKPMK|VH 0.062 . NF0038120 203 MKVHLLR|EE 0.083 . NF0038120 209 REEGSTK|VK 0.059 . NF0038120 211 EGSTKVK|KE 0.066 . NF0038120 212 GSTKVKK|EI 0.115 . ____________________________^_________________

Fasta :-
>NF0038120 ATGATGTACTCACCTGCAGCTGCTTACGAAGAAGGTTATGTTCAATATCAAATTCCATCC CGACCCACAAAAATAACGACCACGTTTGTAAAACAATTAATAGCCATCAAAGATGCAATG GAAAAAGAAATTAGAGATTTAATGCTGTCGTTGGATAAGGTCGGAGTTGGATTAAAAACA CCATTGGTGGATGATGAAGGCTTTCCGAGAGCAGATCTTGATTTAAATGATATTCGATCG AAAAGACACAGAATTGCTTGTTTACAAAATGATCACATTTCCTTGATGAATGATATACAG AATTTTTTATATGAATTACATGAAGAGAGTAGAGCCAATGCACAACCATCCACAACGTCG CCAAATATTGCTCAATCATCATCCTCCATGGACACCAGTAATGATGAAGAAGAACAATTA GAGCCATTCCTCAAAGTGAATACAGTTTCTCCAAATTCGCCAGCAGAAAAAGCTGGTCTG CATCCAGGAGATGAAATTACACAATTTGGCTACCTTGTTAAAAAAGATATTAAGAATAAT GGATTGAAAATTCTTCCAACAGTGGTTCAATCGAATGTCAATAAGCCAATGAAAGTTCAT CTTCTAAGGGAAGAAGGCTCCACCAAAGTGAAAAAAGAAATTATTCTTGTCCCATCATAT TGGAGTGGTCAAGGTTTATTAGGATGCCACTTTCTTGAAATCCATTAA
Download Fasta

Fasta :-

MMYSPAAAYEEGYVQYQIPSRPTKITTTFVKQLIAIKDAMEKEIRDLMLSLDKVGVGLKT PLVDDEGFPRADLDLNDIRSKRHRIACLQNDHISLMNDIQNFLYELHEESRANAQPSTTS PNIAQSSSSMDTSNDEEEQLEPFLKVNTVSPNSPAEKAGLHPGDEITQFGYLVKKDIKNN GLKILPTVVQSNVNKPMKVHLLREEGSTKVKKEIILVPSYWSGQGLLGCHFLEIH

SCOPe

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0038120	T	119	0.604	0.439	NF0038120	T	118	0.595	0.354	NF0038120	S	127	0.533	0.062	NF0038120	T	132	0.533	0.053	NF0038120	S	128	0.506	0.016	NF0038120	S	129	0.506	0.037	NF0038120	S	120	0.505	0.076

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0038120	T	119	0.604	0.439	NF0038120	T	118	0.595	0.354	NF0038120	S	127	0.533	0.062	NF0038120	T	132	0.533	0.053	NF0038120	S	128	0.506	0.016	NF0038120	S	129	0.506	0.037	NF0038120	S	120	0.505	0.076

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0038120	128 S	AQSSSSMDT	0.994	unsp	NF0038120	153 S	VSPNSPAEK	0.996	unsp

NF0038120 | 26s proteasome non-atpase regulatory subunit 9

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0005515

Computed_GO_Functions: protein binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

SCOPe

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India