NF0039810 | probable 26s proteasome non-atpase regulatory subunit 8a

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0005515
Computed_GO_Functions: protein binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0039810	OTHER	0.999952	0.000023	0.000025

No Results

Fasta :-
>NF0039810 MSHHHHHNDAKDLDPHAARLAAQRSSIDYTDFPAFPTKVVVHPLVLLSVVDHYNRVAKDT NNRVAGVLLGEISKDGVVDCTNSFAVPFEEDPKDPSIWFFDHSFLENMLGMFRKVTAKEK VVGWYSTGPKIRKSDIEIHQIIKEKYLPHPTYCIIDVNPEQENVIPTDAYVAVEEREDQQ SQPKLTFTHLPSEIGAYEAEEIGVEHLLRDVKDTTISDLASAVSTRMTSLKALRNRLSEI NTYLDQVVSGKMPVNHNILYLLQDVFNLLPGLHTNDAKQSIGKKTNDTYLAMYLSSVIRC IISLHDLINNKIEMREFEAKQLDKKKEEKKEEKKEESSNDKEKESQKTSTDKK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0039810.fa Sequence name : NF0039810 Sequence length : 353 VALUES OF COMPUTED PARAMETERS Coef20 : 2.695 CoefTot : -1.217 ChDiff : -10 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.112 1.729 0.221 0.578 MesoH : -0.860 0.195 -0.479 0.165 MuHd_075 : 3.949 4.285 2.034 1.110 MuHd_095 : 14.170 13.414 5.544 3.373 MuHd_100 : 11.227 9.892 4.088 2.629 MuHd_105 : 10.514 8.298 2.747 2.398 Hmax_075 : -11.667 -5.950 -6.677 -0.140 Hmax_095 : -4.550 -1.225 -4.704 0.963 Hmax_100 : -8.600 -3.300 -5.643 0.460 Hmax_105 : -3.500 -2.567 -6.312 1.330 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9980 0.0020 DFMC : 0.9980 0.0020

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 353 NF0039810 MSHHHHHNDAKDLDPHAARLAAQRSSIDYTDFPAFPTKVVVHPLVLLSVVDHYNRVAKDTNNRVAGVLLGEISKDGVVDC 80 TNSFAVPFEEDPKDPSIWFFDHSFLENMLGMFRKVTAKEKVVGWYSTGPKIRKSDIEIHQIIKEKYLPHPTYCIIDVNPE 160 QENVIPTDAYVAVEEREDQQSQPKLTFTHLPSEIGAYEAEEIGVEHLLRDVKDTTISDLASAVSTRMTSLKALRNRLSEI 240 NTYLDQVVSGKMPVNHNILYLLQDVFNLLPGLHTNDAKQSIGKKTNDTYLAMYLSSVIRCIISLHDLINNKIEMREFEAK 320 QLDKKKEEKKEEKKEESSNDKEKESQKTSTDKK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0039810 11 HHHNDAK|DL 0.104 . NF0039810 19 LDPHAAR|LA 0.084 . NF0039810 24 ARLAAQR|SS 0.155 . NF0039810 38 FPAFPTK|VV 0.075 . NF0039810 55 VVDHYNR|VA 0.075 . NF0039810 58 HYNRVAK|DT 0.245 . NF0039810 63 AKDTNNR|VA 0.102 . NF0039810 74 LLGEISK|DG 0.059 . NF0039810 93 PFEEDPK|DP 0.068 . NF0039810 113 NMLGMFR|KV 0.109 . NF0039810 114 MLGMFRK|VT 0.100 . NF0039810 118 FRKVTAK|EK 0.074 . NF0039810 120 KVTAKEK|VV 0.080 . NF0039810 130 WYSTGPK|IR 0.060 . NF0039810 132 STGPKIR|KS 0.153 . NF0039810 133 TGPKIRK|SD 0.114 . NF0039810 143 EIHQIIK|EK 0.056 . NF0039810 145 HQIIKEK|YL 0.069 . NF0039810 176 YVAVEER|ED 0.096 . NF0039810 184 DQQSQPK|LT 0.078 . NF0039810 209 GVEHLLR|DV 0.151 . NF0039810 212 HLLRDVK|DT 0.130 . NF0039810 226 ASAVSTR|MT 0.111 . NF0039810 231 TRMTSLK|AL 0.084 . NF0039810 234 TSLKALR|NR 0.076 . NF0039810 236 LKALRNR|LS 0.095 . NF0039810 251 DQVVSGK|MP 0.059 . NF0039810 278 LHTNDAK|QS 0.065 . NF0039810 283 AKQSIGK|KT 0.067 . NF0039810 284 KQSIGKK|TN 0.150 . NF0039810 299 YLSSVIR|CI 0.101 . NF0039810 311 HDLINNK|IE 0.057 . NF0039810 315 NNKIEMR|EF 0.106 . NF0039810 320 MREFEAK|QL 0.091 . NF0039810 324 EAKQLDK|KK 0.062 . NF0039810 325 AKQLDKK|KE 0.103 . NF0039810 326 KQLDKKK|EE 0.112 . NF0039810 329 DKKKEEK|KE 0.076 . NF0039810 330 KKKEEKK|EE 0.115 . NF0039810 333 EEKKEEK|KE 0.062 . NF0039810 334 EKKEEKK|EE 0.087 . NF0039810 341 EESSNDK|EK 0.070 . NF0039810 343 SSNDKEK|ES 0.076 . NF0039810 347 KEKESQK|TS 0.065 . NF0039810 352 QKTSTDK|K- 0.065 . NF0039810 353 KTSTDKK|-- 0.130 . ____________________________^_________________

Fasta :-
>NF0039810 ATGAGCCATCATCATCATCACAACGACGCCAAAGATTTAGATCCTCATGCAGCAAGGCTT GCAGCACAGCGCTCCAGTATTGATTACACGGATTTTCCGGCCTTTCCAACCAAGGTGGTG GTGCATCCATTGGTGTTGTTGAGTGTTGTGGATCACTATAATCGGGTTGCGAAAGATACT AATAATAGAGTCGCTGGAGTTTTGTTGGGAGAGATTTCAAAGGATGGTGTGGTGGATTGT ACAAATAGTTTTGCTGTGCCTTTTGAGGAAGATCCTAAAGATCCAAGTATTTGGTTCTTT GATCATAGTTTCCTTGAGAATATGTTGGGAATGTTTAGAAAGGTAACAGCCAAGGAAAAG GTGGTCGGATGGTACAGTACTGGACCAAAAATCAGAAAATCCGATATCGAGATTCATCAA ATTATCAAGGAGAAATACCTTCCTCATCCAACCTATTGTATTATTGATGTAAATCCAGAA CAAGAAAATGTAATACCTACTGATGCCTATGTTGCAGTGGAAGAACGTGAAGATCAACAA TCTCAACCAAAGCTCACATTTACTCATTTACCATCTGAAATTGGAGCTTATGAGGCCGAA GAAATTGGTGTCGAACATTTACTTCGTGATGTTAAAGACACAACTATTTCTGATTTGGCT TCAGCAGTGTCAACTCGTATGACAAGCTTAAAGGCACTGAGAAACAGATTGAGCGAGATC AATACTTATCTTGATCAGGTTGTTTCAGGCAAAATGCCAGTCAATCACAACATTTTATAT TTATTACAAGACGTCTTCAATTTACTTCCTGGTTTGCACACGAACGATGCCAAACAATCC ATTGGAAAAAAGACAAATGATACTTATTTGGCCATGTATTTGAGCTCTGTAATTCGCTGT ATCATTTCATTGCATGATTTGATCAATAACAAGATTGAAATGAGAGAATTTGAAGCAAAA CAGCTCGATAAAAAGAAGGAAGAGAAGAAAGAAGAGAAGAAGGAAGAATCCTCTAACGAC AAGGAAAAGGAATCACAAAAAACTTCCACAGACAAAAAGTAA
Download Fasta

Fasta :-

MSHHHHHNDAKDLDPHAARLAAQRSSIDYTDFPAFPTKVVVHPLVLLSVVDHYNRVAKDT NNRVAGVLLGEISKDGVVDCTNSFAVPFEEDPKDPSIWFFDHSFLENMLGMFRKVTAKEK VVGWYSTGPKIRKSDIEIHQIIKEKYLPHPTYCIIDVNPEQENVIPTDAYVAVEEREDQQ SQPKLTFTHLPSEIGAYEAEEIGVEHLLRDVKDTTISDLASAVSTRMTSLKALRNRLSEI NTYLDQVVSGKMPVNHNILYLLQDVFNLLPGLHTNDAKQSIGKKTNDTYLAMYLSSVIRC IISLHDLINNKIEMREFEAKQLDKKKEEKKEEKKEESSNDKEKESQKTSTDKK

CATH

No Results

	ID	Site	Position	Gscore	Iscore
	NF0039810	T	350	0.551	0.052

	ID	Site	Position	Gscore	Iscore
	NF0039810	T	350	0.551	0.052

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0039810	337 S	KKEESSNDK	0.994	unsp	NF0039810	337 S	KKEESSNDK	0.994	unsp	NF0039810	337 S	KKEESSNDK	0.994	unsp	NF0039810	345 S	KEKESQKTS	0.994	unsp	NF0039810	134 S	KIRKSDIEI	0.997	unsp	NF0039810	229 S	TRMTSLKAL	0.996	unsp

NF0039810 | probable 26s proteasome non-atpase regulatory subunit 8a

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0005515

Computed_GO_Functions: protein binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

CATH

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India