NF0044390 | endopeptidase atp-dependent hsl atp-binding subunit

UniProt_ID:

Computed_GO_Component_IDs: GO:0009376 GO:0005737
Computed_GO_Components: HslUV protease complex cytoplasm
Computed_GO_Function_IDs: GO:0005524 GO:0016887 GO:0070011
Computed_GO_Functions: ATP binding ATPase activity peptidase activity, acting on L-amino acid peptides
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0044390	OTHER	0.671507	0.000339	0.328154

No Results

Fasta :-
>NF0044390 MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMS YFRSFSTIVNRTQKSSSSTTGKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLE NMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNTFLEDEEKLIESFNRVVFEAY KLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARD LIDVSINLLKNNLSELFKGYLNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIE KIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMSALSDLFDAVKNNFTPQNSKF TIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDH VLFIASGAFHDKKPSDLMSELQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFE TEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIIDKCLEELSFIIPDLVKSDSTT IESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0044390.fa Sequence name : NF0044390 Sequence length : 718 VALUES OF COMPUTED PARAMETERS Coef20 : 3.795 CoefTot : -0.661 ChDiff : -5 ZoneTo : 88 KR : 11 DE : 1 CleavSite : 73 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.441 1.294 -0.035 0.490 MesoH : -0.585 0.342 -0.421 0.161 MuHd_075 : 34.167 21.160 10.901 7.058 MuHd_095 : 37.527 25.567 9.937 8.758 MuHd_100 : 39.186 23.696 9.974 9.432 MuHd_105 : 40.618 25.388 11.300 10.565 Hmax_075 : 11.783 17.383 3.876 3.395 Hmax_095 : 12.425 18.500 3.323 4.930 Hmax_100 : 16.100 15.100 1.960 6.310 Hmax_105 : 18.200 15.400 2.114 6.218 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0607 0.9393 DFMC : 0.0310 0.9690 This protein is probably imported in chloroplast. f(Ser) = 0.2500 f(Arg) = 0.0682 CMi = 1.51099 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 718 NF0044390 MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMSYFRSFSTIVNRTQKSSSSTT 80 GKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLENMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNT 160 FLEDEEKLIESFNRVVFEAYKLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT 240 LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARDLIDVSINLLKNNLSELFKGY 320 LNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIEKIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMS 400 ALSDLFDAVKNNFTPQNSKFTIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA 480 KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDHVLFIASGAFHDKKPSDLMSE 560 LQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFETEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIID 640 KCLEELSFIIPDLVKSDSTTIESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI 720 ................................................................................ 80 ................................................................................ 160 ...............................................................P................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0044390 2 -----MK|SL 0.085 . NF0044390 6 -MKSLLK|AS 0.069 . NF0044390 22 SLMGTLR|SR 0.136 . NF0044390 24 MGTLRSR|TS 0.095 . NF0044390 28 RSRTSSR|GG 0.114 . NF0044390 53 SNHHVGR|FG 0.146 . NF0044390 63 STMSYFR|SF 0.165 . NF0044390 71 FSTIVNR|TQ 0.075 . NF0044390 74 IVNRTQK|SS 0.232 . NF0044390 82 SSSTTGK|KG 0.074 . NF0044390 83 SSTTGKK|GS 0.090 . NF0044390 101 GEDIFDK|LK 0.059 . NF0044390 103 DIFDKLK|KL 0.066 . NF0044390 104 IFDKLKK|LG 0.097 . NF0044390 116 QGSPEVK|KH 0.065 . NF0044390 117 GSPEVKK|HL 0.136 . NF0044390 128 MMDFMLK|PG 0.060 . NF0044390 131 FMLKPGK|SM 0.070 . NF0044390 150 PESSEAK|KE 0.066 . NF0044390 151 ESSEAKK|EE 0.116 . NF0044390 154 EAKKEEK|PK 0.057 . NF0044390 156 KKEEKPK|PL 0.087 . NF0044390 167 FLEDEEK|LI 0.062 . NF0044390 174 LIESFNR|VV 0.124 . NF0044390 181 VVFEAYK|LH 0.056 . NF0044390 184 EAYKLHR|NS 0.103 . NF0044390 202 IVNSLDK|HI 0.072 . NF0044390 208 KHIVGQR|DA 0.115 . NF0044390 211 VGQRDAK|RA 0.131 . NF0044390 212 GQRDAKR|AV 0.340 . NF0044390 219 AVAIALR|NR 0.066 . NF0044390 221 AIALRNR|FR 0.090 . NF0044390 223 ALRNRFR|RK 0.092 . NF0044390 224 LRNRFRR|KT 0.581 *ProP* NF0044390 225 RNRFRRK|TL 0.100 . NF0044390 234 IEWYNDK|SR 0.065 . NF0044390 236 WYNDKSR|PK 0.098 . NF0044390 238 NDKSRPK|TT 0.058 . NF0044390 249 PSEIIPK|NI 0.071 . NF0044390 261 GPTGCGK|TE 0.058 . NF0044390 266 GKTEIAR|RI 0.098 . NF0044390 267 KTEIARR|IS 0.097 . NF0044390 270 IARRISK|LV 0.181 . NF0044390 278 VSAPFLK|VE 0.058 . NF0044390 283 LKVEATK|YT 0.085 . NF0044390 292 ELGYHGR|DV 0.278 . NF0044390 299 DVDTIAR|DL 0.095 . NF0044390 310 VSINLLK|NN 0.058 . NF0044390 318 NLSELFK|GY 0.065 . NF0044390 326 YLNAPLK|NE 0.066 . NF0044390 348 QQLIENR|LI 0.085 . NF0044390 361 GSESIEK|IR 0.059 . NF0044390 363 ESIEKIR|ES 0.071 . NF0044390 368 IRESTLR|DY 0.127 . NF0044390 375 DYLNMLR|NG 0.064 . NF0044390 382 NGELDDR|HV 0.111 . NF0044390 394 VPVASSK|RG 0.061 . NF0044390 395 PVASSKR|GS 0.302 . NF0044390 410 DLFDAVK|NN 0.060 . NF0044390 419 FTPQNSK|FT 0.063 . NF0044390 449 PTPTAFK|KV 0.061 . NF0044390 450 TPTAFKK|VK 0.103 . NF0044390 452 TAFKKVK|LT 0.074 . NF0044390 456 KVKLTVK|EA 0.067 . NF0044390 459 LTVKEAK|VK 0.068 . NF0044390 461 VKEAKVK|LA 0.073 . NF0044390 469 AELELEK|LI 0.055 . NF0044390 481 IFIEEAK|RI 0.066 . NF0044390 482 FIEEAKR|IA 0.198 . NF0044390 486 AKRIAER|EG 0.090 . NF0044390 497 FIDEIDK|IC 0.057 . NF0044390 505 CGDPNQK|RG 0.054 . NF0044390 506 GDPNQKR|GS 0.201 . NF0044390 518 SGEGVQK|DL 0.073 . NF0044390 532 GCEIQTK|YG 0.065 . NF0044390 537 TKYGTFK|TD 0.070 . NF0044390 552 SGAFHDK|KP 0.073 . NF0044390 553 GAFHDKK|PS 0.090 . NF0044390 564 MSELQGR|LP 0.078 . NF0044390 568 QGRLPVR|VT 0.106 . NF0044390 577 LGSLNTK|EE 0.061 . NF0044390 593 PEFNLIR|QH 0.074 . NF0044390 605 FETEGVR|LN 0.068 . NF0044390 633 VDNLGTR|RL 0.084 . NF0044390 634 DNLGTRR|LI 0.134 . NF0044390 641 LIGIIDK|CL 0.062 . NF0044390 655 IIPDLVK|SD 0.076 . NF0044390 667 IESEFNK|VG 0.060 . NF0044390 686 NEGTSQK|QL 0.065 . NF0044390 699 INAQFVK|KK 0.068 . NF0044390 700 NAQFVKK|KI 0.121 . NF0044390 701 AQFVKKK|IE 0.119 . NF0044390 710 SSPLFAK|MD 0.066 . NF0044390 714 FAKMDVR|KF 0.089 . NF0044390 715 AKMDVRK|FT 0.123 . ____________________________^_________________

Fasta :-
>NF0044390 ATGAAATCGCTGTTGAAAGCCTCTCACGCGTGCTTGCATCATCATTCTTTGATGGGAACA CTTCGTTCAAGAACTTCTTCGCGAGGAGGTTCCTCTCATTCCTGCATCATTCAATTACTT GATGCATCGTTAACGTCGAGTAATCATCATGTTGGAAGATTCGGGCACTCAACAATGTCA TATTTCCGATCCTTTTCAACCATCGTGAATCGGACTCAAAAATCTTCATCATCTACAACG GGAAAGAAAGGAAGTAATTTTAGTGATAACAGTGATGACGATGGAGAAGATATATTTGAT AAATTAAAGAAGCTCGGGTTTTTAGGACAAGGCTCTCCCGAAGTGAAAAAACATTTGGAA AATATGATGGATTTCATGCTCAAGCCTGGAAAATCTATGCCAACATCTTCATCTTCGTCG ACAATGACACCCGAAAGCTCTGAAGCCAAGAAAGAGGAAAAACCGAAACCTCTCAATACA TTCCTGGAGGATGAAGAAAAATTAATAGAGAGTTTTAATAGAGTTGTTTTTGAAGCTTAT AAATTACATAGAAACAGTTTTGAATCTCAATTAACACCAGAGGAAATTGTGAATAGTTTG GATAAACATATAGTTGGACAAAGGGATGCAAAGAGAGCGGTTGCGATTGCTCTCCGAAAT AGGTTTAGAAGAAAGACTCTTATTGAATGGTACAATGACAAGAGTAGACCAAAAACAACT TTGGATCCCAGTGAAATTATTCCAAAGAACATTTTAATGATTGGCCCAACAGGTTGCGGA AAAACAGAAATTGCACGTCGAATTTCTAAGCTTGTTTCAGCTCCTTTTTTAAAAGTAGAA GCCACAAAATATACTGAGCTTGGTTATCACGGTAGAGATGTGGATACAATTGCTCGTGAT TTAATTGATGTTTCTATTAACTTGTTGAAAAATAATCTCTCTGAGTTGTTTAAAGGTTAT TTAAATGCTCCATTAAAGAATGAGGAGGCAGATCCTGGAGCTGTACTGTTTCATTCCTAC TTGCAACAATTAATTGAAAATAGATTGATTCATCTAATGTTCGGTTCTGAAAGCATTGAA AAAATAAGAGAATCTACACTCAGAGACTATTTGAACATGTTGAGAAATGGAGAGTTGGAT GATCGTCATGTTGAAATTGAAGTTCCAGTTGCGTCGTCCAAAAGAGGCTCTGGAATGTCT GCCCTGAGCGATCTATTTGATGCTGTTAAGAATAATTTTACACCTCAAAATTCCAAATTT ACAATACCAGATATTGCAGAATTAAGCAATCATCAAACACCATTTGATACCATGCTCATC GAGTCACCAACTCCTACTGCTTTCAAAAAAGTAAAACTGACCGTCAAAGAGGCCAAGGTA AAGCTTGCTGAGCTTGAGTTAGAAAAATTGATAAATAACCCAATATTCATTGAGGAAGCG AAAAGAATTGCCGAAAGAGAGGGAATTGTTTTCATTGACGAAATTGACAAAATTTGTGGT GATCCCAACCAAAAGAGAGGCTCAGCAGATGCATCTGGTGAAGGTGTTCAAAAGGACTTG CTGCCGCTTCTCGAAGGTTGTGAAATTCAAACCAAATACGGAACCTTTAAGACAGACCAT GTATTATTTATTGCAAGTGGAGCATTTCACGATAAAAAACCTTCAGATCTCATGTCTGAA TTGCAAGGAAGATTACCAGTGAGAGTTACCTTAGGCTCACTCAATACAAAAGAAGAGTTG TATCAAGTGTTGACAATTCCAGAATTTAATTTAATACGCCAACATGTGTCACTATTTGAA ACGGAAGGAGTTAGACTGAATATCACCGATGAAGCGATCGAGGAAATTGCTACATTCTCA GCAATATGCAACTCTAGTGTGGATAATCTAGGCACTCGTAGACTCATTGGTATCATTGAC AAGTGCCTGGAAGAACTCTCCTTTATTATACCTGACCTTGTGAAATCTGACTCAACTACA ATAGAGAGTGAATTCAACAAGGTTGGACTACAGGATTGCTATCAGATTATTCCATCAAAT GAAGGAACGAGCCAAAAGCAGCTGTTGGAAATCACGATCAATGCACAATTTGTCAAGAAA AAGATCGAATCGAGTCCATTATTCGCAAAAATGGATGTACGAAAGTTTACCATCTAA
Download Fasta

Fasta :-

MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMS YFRSFSTIVNRTQKSSSSTTGKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLE NMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNTFLEDEEKLIESFNRVVFEAY KLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARD LIDVSINLLKNNLSELFKGYLNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIE KIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMSALSDLFDAVKNNFTPQNSKF TIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDH VLFIASGAFHDKKPSDLMSELQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFE TEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIIDKCLEELSFIIPDLVKSDSTT IESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI

Extended AAA-ATPase domain

title: ATP binding site
coordinates: P256,T257,G258,C259,G260,K261,T262,E263

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0044390	T	143	0.604	0.085	NF0044390	T	141	0.557	0.178

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0044390	T	143	0.604	0.085	NF0044390	T	141	0.557	0.178

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0044390	77 S	QKSSSSTTG	0.992	unsp	NF0044390	77 S	QKSSSSTTG	0.992	unsp	NF0044390	77 S	QKSSSSTTG	0.992	unsp	NF0044390	146 S	MTPESSEAK	0.992	unsp	NF0044390	186 S	LHRNSFESQ	0.995	unsp	NF0044390	366 T	IRESTLRDY	0.993	unsp	NF0044390	397 S	SKRGSGMSA	0.994	unsp	NF0044390	684 S	NEGTSQKQL	0.992	unsp	NF0044390	26 S	RSRTSSRGG	0.996	unsp	NF0044390	27 S	SRTSSRGGS	0.995	unsp

NF0044390 | endopeptidase atp-dependent hsl atp-binding subunit

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0009376 GO:0005737

Computed_GO_Components: HslUV protease complex cytoplasm

Computed_GO_Function_IDs: GO:0005524 GO:0016887 GO:0070011

Computed_GO_Functions: ATP binding ATPase activity peptidase activity, acting on L-amino acid peptides

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Extended AAA-ATPase domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India