NF0046960 | ubiquitin thioesterase otu1

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_IDPredictionOTHERSPmTPCS_Position
NF0046960OTHER0.9979920.0013690.000639
No Results

  • Fasta :-

    >NF0046960 MKFRVSLPQSAPIVIDLPQLQSDTTATLDDLVNSLLMHDSIPTSLKQCAISLKVGFPPTK VDLLKNGSSTLKDLKIANGEKIIIEEDTGSSGKIVKGTNVGPYVPPSTNVGYFVRRKQPS DNSCLFHSLSYVLNGKNNGKVKELREICAHYVAENPKVYTTEFLGMRNIEYANWILHEDT WGGAIEISILSAYYKVRIIAFDTTTCREDVYGSDHDEYTAMALIIYTGDHYDALCLNPNG EEGSPDKDIVLFNVKDVNILGKARAYVQEEHKKFLSRRK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0046960.fa Sequence name : NF0046960 Sequence length : 279 VALUES OF COMPUTED PARAMETERS Coef20 : 3.923 CoefTot : -0.152 ChDiff : -3 ZoneTo : 15 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.441 1.224 -0.055 0.470 MesoH : -0.677 0.194 -0.419 0.179 MuHd_075 : 4.145 3.620 1.943 0.904 MuHd_095 : 18.617 10.775 4.819 3.315 MuHd_100 : 19.391 13.460 5.851 3.611 MuHd_105 : 17.080 14.925 5.669 3.265 Hmax_075 : 15.050 15.400 2.696 5.160 Hmax_095 : 14.200 14.700 2.439 5.360 Hmax_100 : 16.200 17.500 3.127 5.540 Hmax_105 : 18.200 21.350 3.787 6.673 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9740 0.0260 DFMC : 0.9716 0.0284
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 279 NF0046960 MKFRVSLPQSAPIVIDLPQLQSDTTATLDDLVNSLLMHDSIPTSLKQCAISLKVGFPPTKVDLLKNGSSTLKDLKIANGE 80 KIIIEEDTGSSGKIVKGTNVGPYVPPSTNVGYFVRRKQPSDNSCLFHSLSYVLNGKNNGKVKELREICAHYVAENPKVYT 160 TEFLGMRNIEYANWILHEDTWGGAIEISILSAYYKVRIIAFDTTTCREDVYGSDHDEYTAMALIIYTGDHYDALCLNPNG 240 EEGSPDKDIVLFNVKDVNILGKARAYVQEEHKKFLSRRK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0046960 2 -----MK|FR 0.061 . NF0046960 4 ---MKFR|VS 0.087 . NF0046960 46 SIPTSLK|QC 0.066 . NF0046960 53 QCAISLK|VG 0.059 . NF0046960 60 VGFPPTK|VD 0.055 . NF0046960 65 TKVDLLK|NG 0.072 . NF0046960 72 NGSSTLK|DL 0.077 . NF0046960 75 STLKDLK|IA 0.062 . NF0046960 81 KIANGEK|II 0.067 . NF0046960 93 DTGSSGK|IV 0.070 . NF0046960 96 SSGKIVK|GT 0.079 . NF0046960 115 NVGYFVR|RK 0.085 . NF0046960 116 VGYFVRR|KQ 0.096 . NF0046960 117 GYFVRRK|QP 0.081 . NF0046960 136 SYVLNGK|NN 0.066 . NF0046960 140 NGKNNGK|VK 0.061 . NF0046960 142 KNNGKVK|EL 0.083 . NF0046960 145 GKVKELR|EI 0.114 . NF0046960 157 YVAENPK|VY 0.069 . NF0046960 167 TEFLGMR|NI 0.092 . NF0046960 195 ILSAYYK|VR 0.077 . NF0046960 197 SAYYKVR|II 0.112 . NF0046960 207 FDTTTCR|ED 0.068 . NF0046960 247 EEGSPDK|DI 0.060 . NF0046960 255 IVLFNVK|DV 0.078 . NF0046960 262 DVNILGK|AR 0.068 . NF0046960 264 NILGKAR|AY 0.107 . NF0046960 272 YVQEEHK|KF 0.055 . NF0046960 273 VQEEHKK|FL 0.116 . NF0046960 277 HKKFLSR|RK 0.094 . NF0046960 278 KKFLSRR|K- 0.173 . NF0046960 279 KFLSRRK|-- 0.081 . ____________________________^_________________

  • Fasta :-

    >NF0046960 ATGAAATTTAGAGTTTCTCTTCCGCAATCAGCTCCGATTGTTATTGATCTTCCGCAACTT CAATCCGACACCACAGCCACATTGGATGATTTAGTCAATTCTCTGCTTATGCACGATTCC ATACCTACGTCCTTGAAACAATGTGCTATTTCTTTGAAAGTTGGATTTCCTCCAACAAAA GTAGATCTTTTGAAGAATGGATCATCCACATTGAAAGATTTAAAAATCGCGAATGGAGAA AAGATTATTATTGAAGAAGATACTGGATCGAGTGGAAAGATTGTGAAAGGAACTAATGTT GGTCCTTATGTTCCGCCATCGACCAATGTTGGTTATTTTGTGAGAAGAAAGCAACCATCT GACAATTCATGTCTCTTCCACAGCTTATCCTATGTTTTAAATGGAAAGAATAATGGAAAA GTGAAAGAATTGCGTGAAATTTGTGCTCATTATGTCGCTGAAAATCCAAAGGTGTATACT ACTGAATTTTTGGGAATGAGAAATATTGAATACGCAAATTGGATCTTGCATGAAGACACT TGGGGAGGAGCAATTGAAATTTCCATTCTTTCTGCATACTACAAAGTGAGAATCATTGCA TTTGACACAACCACATGTAGAGAAGACGTTTATGGCAGCGACCATGATGAGTACACAGCC ATGGCTTTAATCATTTACACAGGAGATCACTATGATGCATTATGTTTGAATCCTAATGGA GAAGAGGGATCTCCTGACAAAGATATTGTGTTGTTTAATGTCAAAGATGTGAATATTTTG GGAAAAGCAAGAGCTTATGTTCAAGAAGAACACAAGAAATTCCTTTCTAGGAGAAAATAA
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  • Fasta :-

    MKFRVSLPQSAPIVIDLPQLQSDTTATLDDLVNSLLMHDSIPTSLKQCAISLKVGFPPTK VDLLKNGSSTLKDLKIANGEKIIIEEDTGSSGKIVKGTNVGPYVPPSTNVGYFVRRKQPS DNSCLFHSLSYVLNGKNNGKVKELREICAHYVAENPKVYTTEFLGMRNIEYANWILHEDT WGGAIEISILSAYYKVRIIAFDTTTCREDVYGSDHDEYTAMALIIYTGDHYDALCLNPNG EEGSPDKDIVLFNVKDVNILGKARAYVQEEHKKFLSRRK

    No Results
    No Results
IDSitePositionGscoreIscore
NF0046960T980.5000.045
IDSitePositionGscoreIscore
NF0046960T980.5000.045
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India