NF0053860 | cysteine protease atg4b

UniProt_ID:

Computed_GO_Component_IDs:
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Computed_GO_Process_IDs:
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Curated_GO_Component_IDs:
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Curated_GO_Function_IDs:
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Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0053860	OTHER	0.999996	0.000004	0.000000

No Results

Fasta :-
>NF0053860 MDFLDYIGFSTKDNNIPNESMKAANTIDFSETSSPIWLLGLMYQPCLICSDEQGGSMLDS SMMMSSMASSSSFTATGTENSSTTTATVSSLPSFANAPDQQQALPTNGSINQQSMYAQFQ QQVSTTNNDDNSPKTPSKAKRSFFSMPKKKKTYTDTDLVKIYHNKLQLESFLSDFESRFW FSYRKDFEPISSNPLPMEQIELQPVNSMGNLSSINSTGSGIISSQGSVLSSGASQNGDDT PFLTGSFSNSPPHAQYYYNNSNSGNQSTKSSSSSSLSKLYRYVINYTAPTSDTGWGCMMR SGQMLLAQAFLTHYLGRNFRLPTTDRTRGMYQIIQSWFYDLDACPYSIHKIARAGTYFGK KVGEWFGPSTIAYVLKLLVEQHLRGEFVVHVADQGGIYIDELLAKCEYDYEEFSIDVNNV QKENTESIYPQIECIGPRLRVTKKWRPLIILIPLRLGLENFNTDYIPSIKKVFEIPQTLG IMGGKPKSSLYFIGYHDNEVIYLDPHTTQKSSPKEETYHCKTPLKIPISKIDPSMALGFL CSTRQDFDEFCSLANQHLTHRSHPLVCIREQKPQEKDLDVLSFDELSDENRKEPHDEEDD DIVFV
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0053860.fa Sequence name : NF0053860 Sequence length : 605 VALUES OF COMPUTED PARAMETERS Coef20 : 3.105 CoefTot : 0.000 ChDiff : -16 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.688 1.188 0.243 0.529 MesoH : 0.452 0.196 -0.160 0.228 MuHd_075 : 4.783 4.302 1.685 1.420 MuHd_095 : 19.462 12.751 4.613 2.519 MuHd_100 : 17.870 4.300 3.301 1.325 MuHd_105 : 24.662 10.887 6.567 3.820 Hmax_075 : -3.000 2.400 -3.105 2.420 Hmax_095 : 2.200 5.200 -1.878 2.570 Hmax_100 : 1.900 2.600 -2.157 2.010 Hmax_105 : 6.400 6.067 -0.620 3.337 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9586 0.0414 DFMC : 0.9562 0.0438

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 605 NF0053860 MDFLDYIGFSTKDNNIPNESMKAANTIDFSETSSPIWLLGLMYQPCLICSDEQGGSMLDSSMMMSSMASSSSFTATGTEN 80 SSTTTATVSSLPSFANAPDQQQALPTNGSINQQSMYAQFQQQVSTTNNDDNSPKTPSKAKRSFFSMPKKKKTYTDTDLVK 160 IYHNKLQLESFLSDFESRFWFSYRKDFEPISSNPLPMEQIELQPVNSMGNLSSINSTGSGIISSQGSVLSSGASQNGDDT 240 PFLTGSFSNSPPHAQYYYNNSNSGNQSTKSSSSSSLSKLYRYVINYTAPTSDTGWGCMMRSGQMLLAQAFLTHYLGRNFR 320 LPTTDRTRGMYQIIQSWFYDLDACPYSIHKIARAGTYFGKKVGEWFGPSTIAYVLKLLVEQHLRGEFVVHVADQGGIYID 400 ELLAKCEYDYEEFSIDVNNVQKENTESIYPQIECIGPRLRVTKKWRPLIILIPLRLGLENFNTDYIPSIKKVFEIPQTLG 480 IMGGKPKSSLYFIGYHDNEVIYLDPHTTQKSSPKEETYHCKTPLKIPISKIDPSMALGFLCSTRQDFDEFCSLANQHLTH 560 RSHPLVCIREQKPQEKDLDVLSFDELSDENRKEPHDEEDDDIVFV 640 ................................................................................ 80 ............................................................P................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0053860 12 YIGFSTK|DN 0.069 . NF0053860 22 IPNESMK|AA 0.107 . NF0053860 134 NDDNSPK|TP 0.073 . NF0053860 138 SPKTPSK|AK 0.070 . NF0053860 140 KTPSKAK|RS 0.064 . NF0053860 141 TPSKAKR|SF 0.549 *ProP* NF0053860 148 SFFSMPK|KK 0.059 . NF0053860 149 FFSMPKK|KK 0.099 . NF0053860 150 FSMPKKK|KT 0.129 . NF0053860 151 SMPKKKK|TY 0.107 . NF0053860 160 TDTDLVK|IY 0.065 . NF0053860 165 VKIYHNK|LQ 0.060 . NF0053860 178 LSDFESR|FW 0.122 . NF0053860 184 RFWFSYR|KD 0.090 . NF0053860 185 FWFSYRK|DF 0.092 . NF0053860 269 SGNQSTK|SS 0.098 . NF0053860 278 SSSSLSK|LY 0.073 . NF0053860 281 SLSKLYR|YV 0.207 . NF0053860 300 GWGCMMR|SG 0.128 . NF0053860 317 LTHYLGR|NF 0.082 . NF0053860 320 YLGRNFR|LP 0.175 . NF0053860 326 RLPTTDR|TR 0.082 . NF0053860 328 PTTDRTR|GM 0.095 . NF0053860 350 CPYSIHK|IA 0.070 . NF0053860 353 SIHKIAR|AG 0.122 . NF0053860 360 AGTYFGK|KV 0.085 . NF0053860 361 GTYFGKK|VG 0.096 . NF0053860 376 TIAYVLK|LL 0.068 . NF0053860 384 LVEQHLR|GE 0.082 . NF0053860 405 IDELLAK|CE 0.069 . NF0053860 422 DVNNVQK|EN 0.065 . NF0053860 438 IECIGPR|LR 0.070 . NF0053860 440 CIGPRLR|VT 0.082 . NF0053860 443 PRLRVTK|KW 0.151 . NF0053860 444 RLRVTKK|WR 0.093 . NF0053860 446 RVTKKWR|PL 0.101 . NF0053860 455 IILIPLR|LG 0.069 . NF0053860 470 DYIPSIK|KV 0.078 . NF0053860 471 YIPSIKK|VF 0.075 . NF0053860 485 LGIMGGK|PK 0.062 . NF0053860 487 IMGGKPK|SS 0.082 . NF0053860 510 DPHTTQK|SS 0.102 . NF0053860 514 TQKSSPK|EE 0.068 . NF0053860 521 EETYHCK|TP 0.063 . NF0053860 525 HCKTPLK|IP 0.059 . NF0053860 530 LKIPISK|ID 0.060 . NF0053860 544 GFLCSTR|QD 0.101 . NF0053860 561 NQHLTHR|SH 0.092 . NF0053860 569 HPLVCIR|EQ 0.104 . NF0053860 572 VCIREQK|PQ 0.132 . NF0053860 576 EQKPQEK|DL 0.075 . NF0053860 591 ELSDENR|KE 0.083 . NF0053860 592 LSDENRK|EP 0.081 . ____________________________^_________________

Fasta :-
>NF0053860 ATGGACTTTTTGGACTATATTGGTTTTTCAACAAAGGACAATAATATTCCCAATGAATCT ATGAAAGCTGCAAATACAATTGATTTTTCTGAAACATCTTCCCCGATATGGTTGTTAGGC TTGATGTATCAGCCTTGTTTGATCTGTTCGGATGAACAAGGAGGATCCATGTTGGATAGC TCAATGATGATGTCCTCAATGGCATCGTCGTCTTCATTCACTGCTACAGGAACGGAGAAC TCTTCTACAACAACGGCGACCGTTTCATCATTACCGAGTTTTGCCAACGCACCAGATCAG CAACAAGCACTTCCAACGAATGGAAGTATAAATCAACAATCAATGTATGCACAATTTCAA CAACAAGTTTCAACAACAAATAACGATGATAATTCACCCAAAACACCCTCAAAAGCAAAA CGATCTTTCTTCTCAATGCCAAAGAAAAAGAAAACATATACCGATACCGATTTAGTGAAA ATTTATCATAACAAGTTACAATTGGAGAGCTTTTTGTCTGATTTTGAATCAAGATTTTGG TTTTCATATCGAAAAGATTTTGAACCAATCTCCAGTAATCCACTACCAATGGAACAAATT GAATTACAACCTGTCAACAGCATGGGAAATTTAAGCTCAATTAATAGCACAGGAAGTGGT ATTATCAGTAGTCAGGGAAGCGTATTGAGTTCAGGAGCAAGTCAAAATGGAGATGACACT CCATTCTTGACTGGTTCATTTTCTAACTCTCCTCCTCACGCTCAATATTACTACAACAAT TCTAATAGTGGAAATCAATCAACCAAATCCTCTTCATCTTCCTCACTAAGCAAACTGTAC AGATACGTGATTAACTACACCGCTCCCACCTCTGACACTGGTTGGGGTTGTATGATGAGA TCAGGACAAATGTTATTGGCACAGGCCTTTTTAACACATTACCTTGGAAGGAATTTTCGG TTACCAACCACAGATAGGACGAGAGGAATGTATCAAATTATTCAAAGTTGGTTCTATGAC TTGGATGCATGTCCTTATTCCATTCACAAAATTGCAAGAGCAGGAACCTACTTTGGAAAG AAGGTTGGAGAGTGGTTTGGACCTTCCACAATCGCCTATGTGTTGAAATTGCTCGTGGAG CAGCATCTGAGAGGTGAATTTGTGGTTCATGTGGCGGATCAAGGTGGAATCTATATTGAT GAATTACTTGCTAAATGCGAGTATGACTATGAGGAATTTTCCATCGATGTGAACAATGTA CAGAAAGAAAATACAGAATCTATATATCCACAAATTGAGTGTATAGGCCCAAGATTGCGG GTGACAAAGAAATGGAGACCCTTAATTATTTTAATTCCTCTGCGGTTAGGTTTAGAAAAT TTTAACACAGATTATATACCCTCAATCAAGAAGGTATTCGAAATTCCTCAAACATTGGGA ATTATGGGAGGAAAACCCAAATCGTCGCTCTATTTTATCGGATATCATGACAATGAAGTT ATTTATTTGGACCCTCACACCACACAGAAATCATCTCCAAAGGAAGAAACGTATCATTGT AAAACACCACTCAAAATTCCAATTTCCAAGATTGATCCTTCTATGGCTCTCGGATTTTTG TGCAGCACAAGACAGGATTTTGATGAATTTTGCAGTTTGGCAAATCAACACCTCACTCAC CGGTCTCATCCTTTGGTTTGCATTCGAGAACAAAAGCCCCAAGAGAAAGATTTGGATGTT TTGTCATTTGACGAATTATCGGACGAAAATCGCAAAGAACCTCATGACGAAGAAGATGAT GATATTGTGTTTGTGTAA
Download Fasta

Fasta :-

MDFLDYIGFSTKDNNIPNESMKAANTIDFSETSSPIWLLGLMYQPCLICSDEQGGSMLDS SMMMSSMASSSSFTATGTENSSTTTATVSSLPSFANAPDQQQALPTNGSINQQSMYAQFQ QQVSTTNNDDNSPKTPSKAKRSFFSMPKKKKTYTDTDLVKIYHNKLQLESFLSDFESRFW FSYRKDFEPISSNPLPMEQIELQPVNSMGNLSSINSTGSGIISSQGSVLSSGASQNGDDT PFLTGSFSNSPPHAQYYYNNSNSGNQSTKSSSSSSLSKLYRYVINYTAPTSDTGWGCMMR SGQMLLAQAFLTHYLGRNFRLPTTDRTRGMYQIIQSWFYDLDACPYSIHKIARAGTYFGK KVGEWFGPSTIAYVLKLLVEQHLRGEFVVHVADQGGIYIDELLAKCEYDYEEFSIDVNNV QKENTESIYPQIECIGPRLRVTKKWRPLIILIPLRLGLENFNTDYIPSIKKVFEIPQTLG IMGGKPKSSLYFIGYHDNEVIYLDPHTTQKSSPKEETYHCKTPLKIPISKIDPSMALGFL CSTRQDFDEFCSLANQHLTHRSHPLVCIREQKPQEKDLDVLSFDELSDENRKEPHDEEDD DIVFV

Autophagin-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0053860	T	78	0.646	0.072	NF0053860	T	83	0.637	0.030	NF0053860	T	84	0.626	0.063	NF0053860	T	76	0.595	0.047	NF0053860	T	85	0.591	0.058	NF0053860	T	74	0.589	0.051	NF0053860	T	87	0.548	0.090	NF0053860	S	81	0.517	0.019

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0053860	T	78	0.646	0.072	NF0053860	T	83	0.637	0.030	NF0053860	T	84	0.626	0.063	NF0053860	T	76	0.595	0.047	NF0053860	T	85	0.591	0.058	NF0053860	T	74	0.589	0.051	NF0053860	T	87	0.548	0.090	NF0053860	S	81	0.517	0.019

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0053860	273 S	KSSSSSSLS	0.991	unsp	NF0053860	273 S	KSSSSSSLS	0.991	unsp	NF0053860	273 S	KSSSSSSLS	0.991	unsp	NF0053860	512 S	TQKSSPKEE	0.998	unsp	NF0053860	10 S	YIGFSTKDN	0.995	unsp	NF0053860	132 S	NDDNSPKTP	0.992	unsp

NF0053860 | cysteine protease atg4b

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

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Computed_GO_Process_IDs:

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Curated_GO_Component_IDs:

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Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Autophagin-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India