NF0063990 | acidic repeat-containing protein

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_IDPredictionOTHERSPmTPCS_Position
NF0063990OTHER0.9999830.0000110.000006
No Results

  • Fasta :-

    >NF0063990 MLDIHHHSPQQYEATHQRFLAMSNEFGWASVNWTDFFSHPEHVLPKGLLSCSEALPITQE AQTWSVHMDHDDDHHSCCNNNGTTSAAASYNHTSSHSSSRRKSLGIKRRPSCNPTQVICI SDDDDVEEITKDSAFTNSTNSTNITNKVYISNPVCPSQNSQKSYCDDDGEAEYEFKEESE IEEDLSDNIYEIEKILKKRIRNSKPEYYVKWVGYPSSENSWVKKCDIFDEECIKEFEKSF ESQSHHTKQQPIDLCDDVDSDNSIEYDDEESDEEDKANDFLLSDDDDDDDDDNIFSTAGK KTTSRETPKLHAALDFDSTTKRSKSQKTLNQSKYIADPKQFKKVRGKLLQKYYDEINSVC FKNKLPALKLSEGKAKDLKGKPYLLWNHHLRKTAGYCKLFTLKKSRNGKSTQLEKVVAIE ISTKVCNCEERLVHTLAHEMCHAASFLFDGVTGHGKTFYSYGDLIKKYYPDIPITTCHSY AIDYKYQWQCVDCGSIINRHSKSIDVTKQCCGVCKGRLQEIGKSSNTKNNAYNSYVKEHY KRFKEHHPHLKQGEIMKLVAQSYREQRHGTTTTHD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0063990.fa Sequence name : NF0063990 Sequence length : 575 VALUES OF COMPUTED PARAMETERS Coef20 : 3.041 CoefTot : 0.122 ChDiff : -15 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.776 0.965 -0.121 0.436 MesoH : -0.729 0.042 -0.407 0.160 MuHd_075 : 21.547 7.422 4.367 2.275 MuHd_095 : 25.324 9.417 6.224 4.595 MuHd_100 : 26.547 11.480 6.855 4.338 MuHd_105 : 20.421 11.207 6.218 2.561 Hmax_075 : -1.283 -3.150 -3.849 0.980 Hmax_095 : 1.600 -2.800 -3.484 1.440 Hmax_100 : 1.600 -2.800 -3.484 1.270 Hmax_105 : 4.100 -1.900 -2.469 1.490 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9845 0.0155 DFMC : 0.9432 0.0568
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 575 NF0063990 MLDIHHHSPQQYEATHQRFLAMSNEFGWASVNWTDFFSHPEHVLPKGLLSCSEALPITQEAQTWSVHMDHDDDHHSCCNN 80 NGTTSAAASYNHTSSHSSSRRKSLGIKRRPSCNPTQVICISDDDDVEEITKDSAFTNSTNSTNITNKVYISNPVCPSQNS 160 QKSYCDDDGEAEYEFKEESEIEEDLSDNIYEIEKILKKRIRNSKPEYYVKWVGYPSSENSWVKKCDIFDEECIKEFEKSF 240 ESQSHHTKQQPIDLCDDVDSDNSIEYDDEESDEEDKANDFLLSDDDDDDDDDNIFSTAGKKTTSRETPKLHAALDFDSTT 320 KRSKSQKTLNQSKYIADPKQFKKVRGKLLQKYYDEINSVCFKNKLPALKLSEGKAKDLKGKPYLLWNHHLRKTAGYCKLF 400 TLKKSRNGKSTQLEKVVAIEISTKVCNCEERLVHTLAHEMCHAASFLFDGVTGHGKTFYSYGDLIKKYYPDIPITTCHSY 480 AIDYKYQWQCVDCGSIINRHSKSIDVTKQCCGVCKGRLQEIGKSSNTKNNAYNSYVKEHYKRFKEHHPHLKQGEIMKLVA 560 QSYREQRHGTTTTHD 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .P.............................................................................. 400 ................................................................................ 480 ................................................................................ 560 ............... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0063990 18 YEATHQR|FL 0.110 . NF0063990 46 PEHVLPK|GL 0.066 . NF0063990 100 SSHSSSR|RK 0.116 . NF0063990 101 SHSSSRR|KS 0.171 . NF0063990 102 HSSSRRK|SL 0.275 . NF0063990 107 RKSLGIK|RR 0.061 . NF0063990 108 KSLGIKR|RP 0.141 . NF0063990 109 SLGIKRR|PS 0.161 . NF0063990 131 DVEEITK|DS 0.057 . NF0063990 147 STNITNK|VY 0.063 . NF0063990 162 PSQNSQK|SY 0.094 . NF0063990 176 EAEYEFK|EE 0.071 . NF0063990 194 NIYEIEK|IL 0.058 . NF0063990 197 EIEKILK|KR 0.053 . NF0063990 198 IEKILKK|RI 0.086 . NF0063990 199 EKILKKR|IR 0.155 . NF0063990 201 ILKKRIR|NS 0.097 . NF0063990 204 KRIRNSK|PE 0.121 . NF0063990 210 KPEYYVK|WV 0.077 . NF0063990 223 SENSWVK|KC 0.066 . NF0063990 224 ENSWVKK|CD 0.135 . NF0063990 234 FDEECIK|EF 0.064 . NF0063990 238 CIKEFEK|SF 0.086 . NF0063990 248 SQSHHTK|QQ 0.075 . NF0063990 276 ESDEEDK|AN 0.059 . NF0063990 300 IFSTAGK|KT 0.068 . NF0063990 301 FSTAGKK|TT 0.093 . NF0063990 305 GKKTTSR|ET 0.090 . NF0063990 309 TSRETPK|LH 0.067 . NF0063990 321 DFDSTTK|RS 0.053 . NF0063990 322 FDSTTKR|SK 0.501 *ProP* NF0063990 324 STTKRSK|SQ 0.072 . NF0063990 327 KRSKSQK|TL 0.104 . NF0063990 333 KTLNQSK|YI 0.063 . NF0063990 339 KYIADPK|QF 0.066 . NF0063990 342 ADPKQFK|KV 0.086 . NF0063990 343 DPKQFKK|VR 0.113 . NF0063990 345 KQFKKVR|GK 0.088 . NF0063990 347 FKKVRGK|LL 0.072 . NF0063990 351 RGKLLQK|YY 0.066 . NF0063990 362 INSVCFK|NK 0.073 . NF0063990 364 SVCFKNK|LP 0.066 . NF0063990 369 NKLPALK|LS 0.064 . NF0063990 374 LKLSEGK|AK 0.062 . NF0063990 376 LSEGKAK|DL 0.090 . NF0063990 379 GKAKDLK|GK 0.064 . NF0063990 381 AKDLKGK|PY 0.067 . NF0063990 391 LWNHHLR|KT 0.110 . NF0063990 392 WNHHLRK|TA 0.113 . NF0063990 398 KTAGYCK|LF 0.056 . NF0063990 403 CKLFTLK|KS 0.061 . NF0063990 404 KLFTLKK|SR 0.121 . NF0063990 406 FTLKKSR|NG 0.070 . NF0063990 409 KKSRNGK|ST 0.268 . NF0063990 415 KSTQLEK|VV 0.073 . NF0063990 424 AIEISTK|VC 0.062 . NF0063990 431 VCNCEER|LV 0.131 . NF0063990 456 GVTGHGK|TF 0.062 . NF0063990 466 SYGDLIK|KY 0.064 . NF0063990 467 YGDLIKK|YY 0.094 . NF0063990 485 SYAIDYK|YQ 0.074 . NF0063990 499 CGSIINR|HS 0.106 . NF0063990 502 IINRHSK|SI 0.326 . NF0063990 508 KSIDVTK|QC 0.075 . NF0063990 515 QCCGVCK|GR 0.070 . NF0063990 517 CGVCKGR|LQ 0.095 . NF0063990 523 RLQEIGK|SS 0.090 . NF0063990 528 GKSSNTK|NN 0.065 . NF0063990 537 AYNSYVK|EH 0.059 . NF0063990 541 YVKEHYK|RF 0.062 . NF0063990 542 VKEHYKR|FK 0.265 . NF0063990 544 EHYKRFK|EH 0.082 . NF0063990 551 EHHPHLK|QG 0.069 . NF0063990 557 KQGEIMK|LV 0.080 . NF0063990 564 LVAQSYR|EQ 0.110 . NF0063990 567 QSYREQR|HG 0.266 . ____________________________^_________________

  • Fasta :-

    >NF0063990 ATGTTGGATATCCATCATCATTCTCCACAACAATATGAAGCCACTCACCAACGATTCCTC GCCATGTCCAACGAGTTTGGTTGGGCCAGTGTAAATTGGACTGATTTCTTCAGCCATCCA GAGCATGTATTACCCAAAGGCTTACTCTCTTGCTCTGAGGCTCTGCCTATCACTCAAGAA GCACAAACATGGTCTGTTCATATGGATCATGATGATGATCACCATTCTTGTTGCAACAAC AACGGAACAACTTCTGCTGCTGCTTCCTACAATCACACCTCATCACATTCTTCTTCAAGA AGAAAATCTCTTGGCATCAAACGAAGACCTTCTTGCAATCCAACACAAGTTATTTGCATT TCGGATGATGATGATGTTGAAGAAATAACCAAGGATAGTGCATTTACAAACTCAACAAAC TCAACAAATATCACAAACAAAGTGTACATTTCGAACCCTGTATGTCCATCACAAAATAGT CAAAAATCTTATTGTGATGACGATGGTGAGGCAGAGTATGAATTTAAAGAAGAATCAGAG ATTGAAGAGGATCTCAGTGACAATATTTATGAAATTGAAAAGATTTTAAAAAAAAGAATT CGAAATTCAAAACCTGAATATTATGTGAAATGGGTTGGATATCCAAGTTCTGAAAATAGT TGGGTCAAAAAGTGTGATATTTTCGATGAGGAGTGTATTAAGGAGTTTGAAAAATCATTT GAAAGCCAATCTCATCATACAAAACAACAACCCATTGACTTGTGTGATGATGTTGACAGC GATAATAGTATTGAATATGATGACGAAGAAAGTGATGAAGAAGACAAAGCTAATGATTTC TTATTAAGTGATGATGATGATGATGACGATGATGACAATATATTCTCTACTGCTGGAAAG AAAACAACCTCTCGTGAGACTCCAAAACTTCATGCTGCTCTTGACTTTGACAGCACTACT AAAAGATCCAAATCTCAAAAAACTCTAAACCAATCCAAATACATTGCTGATCCTAAACAA TTTAAAAAGGTTCGAGGAAAACTTCTTCAAAAATATTATGATGAAATTAATTCGGTTTGT TTCAAAAACAAACTTCCTGCTCTTAAATTATCAGAAGGAAAAGCAAAAGATCTCAAAGGA AAGCCTTATTTATTGTGGAATCACCATTTAAGGAAAACCGCTGGTTACTGTAAATTATTT ACATTGAAAAAATCAAGGAATGGTAAATCCACACAATTAGAAAAGGTAGTTGCGATTGAA ATATCGACCAAAGTTTGTAATTGTGAAGAGAGATTGGTTCACACGTTAGCTCATGAAATG TGTCATGCTGCAAGTTTTTTATTTGATGGAGTCACAGGACATGGAAAAACATTTTATTCG TATGGAGATTTAATTAAGAAATATTATCCTGATATTCCCATTACGACATGTCATTCCTAT GCGATTGATTACAAGTATCAATGGCAATGTGTAGATTGTGGTTCCATTATAAATAGACAT TCAAAGTCTATAGATGTCACTAAACAATGTTGTGGAGTATGTAAAGGAAGACTTCAAGAA ATTGGAAAGTCGTCCAACACAAAAAACAATGCATACAATTCGTATGTGAAAGAACATTAT AAAAGATTTAAGGAACACCATCCTCATCTCAAACAAGGTGAAATTATGAAACTCGTTGCT CAATCCTACCGAGAACAAAGACATGGTACTACTACTACTCATGATTAG
  • Download Fasta

  • Fasta :-

    MLDIHHHSPQQYEATHQRFLAMSNEFGWASVNWTDFFSHPEHVLPKGLLSCSEALPITQE AQTWSVHMDHDDDHHSCCNNNGTTSAAASYNHTSSHSSSRRKSLGIKRRPSCNPTQVICI SDDDDVEEITKDSAFTNSTNSTNITNKVYISNPVCPSQNSQKSYCDDDGEAEYEFKEESE IEEDLSDNIYEIEKILKKRIRNSKPEYYVKWVGYPSSENSWVKKCDIFDEECIKEFEKSF ESQSHHTKQQPIDLCDDVDSDNSIEYDDEESDEEDKANDFLLSDDDDDDDDDNIFSTAGK KTTSRETPKLHAALDFDSTTKRSKSQKTLNQSKYIADPKQFKKVRGKLLQKYYDEINSVC FKNKLPALKLSEGKAKDLKGKPYLLWNHHLRKTAGYCKLFTLKKSRNGKSTQLEKVVAIE ISTKVCNCEERLVHTLAHEMCHAASFLFDGVTGHGKTFYSYGDLIKKYYPDIPITTCHSY AIDYKYQWQCVDCGSIINRHSKSIDVTKQCCGVCKGRLQEIGKSSNTKNNAYNSYVKEHY KRFKEHHPHLKQGEIMKLVAQSYREQRHGTTTTHD

  • title: putative peptide binding site
  • coordinates: Y190,E191,I192,E193,K194,V209,W211,V212,G213,Y214,E218,S220,W221,V222,K223,C225,D226,C232,E235,F236
IDSitePositionGscoreIscore
NF0063990T5730.5050.068
IDSitePositionGscoreIscore
NF0063990T5730.5050.068
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0063990103 SSRRKSLGIK0.996unspNF0063990103 SSRRKSLGIK0.996unspNF0063990103 SSRRKSLGIK0.996unspNF0063990111 SKRRPSCNPT0.995unspNF0063990163 SNSQKSYCDD0.997unspNF0063990179 SFKEESEIEE0.991unspNF0063990203 SRIRNSKPEY0.993unspNF0063990271 SDDEESDEED0.997unspNF0063990303 TGKKTTSRET0.992unspNF0063990304 SKKTTSRETP0.993unspNF0063990325 SKRSKSQKTL0.997unspNF0063990562 SLVAQSYREQ0.997unspNF006399098 SSSHSSSRRK0.992unspNF006399099 SSHSSSRRKS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India