NF0067420 | predicted protein

UniProt_ID:

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	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0067420	OTHER	0.999153	0.000801	0.000046

No Results

Fasta :-
>NF0067420 MSPTVAASTTTINTTITTGENMNVEKEESVHIITNNHQEQLIGILCTVMTRSSNIHENSP QQNHGSQNNKKPIAVLCHGLACHKNYFIFPRMESNEYDTFRFDFSGNGESDGEFSYANYH KEVEDLHCVINYLKEKLNYSKISIIGHSKGGNVVLQYASKYPQELQHGVVVNISGRFDMS KTPMNRFSESERHQLENEGIFLWKVFTLEPSLCVRKKQEITTPTNNEEGLTRRYYVTKEA LQERESLNTKIEFNLLYPLKLYSIHGDNDDVIPFQDSQEFHEFLLEQMRKRNLIDRFSHQ VICVKGANHFFAGHYETLIGILKDLLAKE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0067420.fa Sequence name : NF0067420 Sequence length : 329 VALUES OF COMPUTED PARAMETERS Coef20 : 4.357 CoefTot : -0.131 ChDiff : -8 ZoneTo : 19 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.176 1.147 0.008 0.469 MesoH : -1.126 -0.180 -0.629 0.081 MuHd_075 : 11.842 14.913 3.878 3.888 MuHd_095 : 6.635 13.481 2.829 3.166 MuHd_100 : 9.568 14.483 3.208 3.310 MuHd_105 : 10.287 11.935 3.088 3.175 Hmax_075 : 13.825 10.763 2.191 3.850 Hmax_095 : 15.200 12.900 2.538 4.260 Hmax_100 : 15.200 12.900 2.538 4.260 Hmax_105 : 14.233 15.750 2.117 3.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8610 0.1390 DFMC : 0.8094 0.1906

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 329 NF0067420 MSPTVAASTTTINTTITTGENMNVEKEESVHIITNNHQEQLIGILCTVMTRSSNIHENSPQQNHGSQNNKKPIAVLCHGL 80 ACHKNYFIFPRMESNEYDTFRFDFSGNGESDGEFSYANYHKEVEDLHCVINYLKEKLNYSKISIIGHSKGGNVVLQYASK 160 YPQELQHGVVVNISGRFDMSKTPMNRFSESERHQLENEGIFLWKVFTLEPSLCVRKKQEITTPTNNEEGLTRRYYVTKEA 240 LQERESLNTKIEFNLLYPLKLYSIHGDNDDVIPFQDSQEFHEFLLEQMRKRNLIDRFSHQVICVKGANHFFAGHYETLIG 320 ILKDLLAKE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0067420 26 ENMNVEK|EE 0.071 . NF0067420 51 LCTVMTR|SS 0.120 . NF0067420 70 HGSQNNK|KP 0.077 . NF0067420 71 GSQNNKK|PI 0.130 . NF0067420 84 HGLACHK|NY 0.060 . NF0067420 91 NYFIFPR|ME 0.126 . NF0067420 101 NEYDTFR|FD 0.115 . NF0067420 121 SYANYHK|EV 0.100 . NF0067420 134 CVINYLK|EK 0.051 . NF0067420 136 INYLKEK|LN 0.065 . NF0067420 141 EKLNYSK|IS 0.060 . NF0067420 149 SIIGHSK|GG 0.069 . NF0067420 160 VLQYASK|YP 0.067 . NF0067420 176 VVNISGR|FD 0.104 . NF0067420 181 GRFDMSK|TP 0.064 . NF0067420 186 SKTPMNR|FS 0.125 . NF0067420 192 RFSESER|HQ 0.121 . NF0067420 204 EGIFLWK|VF 0.057 . NF0067420 215 EPSLCVR|KK 0.090 . NF0067420 216 PSLCVRK|KQ 0.080 . NF0067420 217 SLCVRKK|QE 0.117 . NF0067420 232 NEEGLTR|RY 0.074 . NF0067420 233 EEGLTRR|YY 0.156 . NF0067420 238 RRYYVTK|EA 0.093 . NF0067420 244 KEALQER|ES 0.074 . NF0067420 250 RESLNTK|IE 0.061 . NF0067420 260 NLLYPLK|LY 0.067 . NF0067420 289 FLLEQMR|KR 0.070 . NF0067420 290 LLEQMRK|RN 0.072 . NF0067420 291 LEQMRKR|NL 0.209 . NF0067420 296 KRNLIDR|FS 0.174 . NF0067420 305 HQVICVK|GA 0.073 . NF0067420 323 TLIGILK|DL 0.071 . NF0067420 328 LKDLLAK|E- 0.062 . ____________________________^_________________

Fasta :-
>NF0067420 ATGAGTCCAACAGTTGCTGCCAGTACGACTACCATCAACACCACCATCACCACTGGTGAG AACATGAACGTGGAAAAAGAAGAATCCGTTCATATCATTACAAATAATCATCAGGAACAA TTAATCGGAATACTTTGTACAGTGATGACAAGATCATCAAATATACATGAAAACTCGCCT CAGCAGAACCATGGTTCTCAAAATAACAAAAAACCAATAGCTGTTCTTTGTCATGGATTG GCATGCCATAAAAATTATTTTATTTTTCCAAGAATGGAAAGTAATGAATACGATACGTTT AGATTTGATTTTTCTGGTAATGGAGAAAGTGATGGTGAATTTTCATATGCCAATTATCAC AAGGAAGTTGAAGATTTACATTGTGTGATTAATTATCTGAAAGAGAAATTAAATTATTCC AAAATTTCAATTATTGGACATTCAAAAGGTGGAAATGTTGTGTTGCAATATGCCAGCAAA TATCCTCAAGAGTTACAACATGGAGTTGTTGTGAATATTTCTGGAAGGTTTGATATGAGT AAAACTCCTATGAACAGATTTTCAGAGAGTGAAAGACATCAATTGGAAAATGAAGGAATA TTCTTGTGGAAAGTTTTCACATTAGAGCCATCTCTTTGTGTACGAAAAAAGCAAGAAATA ACAACACCAACTAATAATGAGGAAGGATTGACGAGACGATACTACGTGACAAAGGAAGCA TTACAAGAAAGAGAATCATTGAACACCAAAATTGAATTTAATCTTCTGTATCCTTTAAAA CTGTATTCCATACATGGAGACAATGACGATGTCATTCCTTTTCAAGATAGCCAAGAGTTT CATGAATTCTTATTGGAACAGATGAGAAAAAGGAATTTAATAGATAGATTTTCTCACCAA GTAATATGTGTGAAAGGAGCTAATCATTTCTTTGCAGGACATTATGAAACATTAATTGGA ATCTTAAAGGACCTCCTGGCAAAAGAATAA
Download Fasta

Fasta :-

MSPTVAASTTTINTTITTGENMNVEKEESVHIITNNHQEQLIGILCTVMTRSSNIHENSP QQNHGSQNNKKPIAVLCHGLACHKNYFIFPRMESNEYDTFRFDFSGNGESDGEFSYANYH KEVEDLHCVINYLKEKLNYSKISIIGHSKGGNVVLQYASKYPQELQHGVVVNISGRFDMS KTPMNRFSESERHQLENEGIFLWKVFTLEPSLCVRKKQEITTPTNNEEGLTRRYYVTKEA LQERESLNTKIEFNLLYPLKLYSIHGDNDDVIPFQDSQEFHEFLLEQMRKRNLIDRFSHQ VICVKGANHFFAGHYETLIGILKDLLAKE

SCOPe

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0067420	T	4	0.682	0.381	NF0067420	S	2	0.621	0.076	NF0067420	T	9	0.594	0.105	NF0067420	T	10	0.574	0.040	NF0067420	T	15	0.546	0.104	NF0067420	T	17	0.543	0.081	NF0067420	T	11	0.539	0.058	NF0067420	T	14	0.534	0.041	NF0067420	T	18	0.522	0.082

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0067420	T	4	0.682	0.381	NF0067420	S	2	0.621	0.076	NF0067420	T	9	0.594	0.105	NF0067420	T	10	0.574	0.040	NF0067420	T	15	0.546	0.104	NF0067420	T	17	0.543	0.081	NF0067420	T	11	0.539	0.058	NF0067420	T	14	0.534	0.041	NF0067420	T	18	0.522	0.082

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0067420	188 S	MNRFSESER	0.991	unsp	NF0067420	277 S	PFQDSQEFH	0.992	unsp

NF0067420 | predicted protein

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

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Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

SCOPe

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India