NF0077300 | atp-dependent protease subunit

_IDPredictionOTHERSPmTPCS_Position
NF0077300OTHER0.8177020.0004570.181841
No Results

  • Fasta :-

    >NF0077300 MKRASXXXXXXXXSLIAFRNQTNKSFLSPFTTMTSSIVIGRRVSSRSSLNFMGNNYSNFD RNISSLYHTCLKSAAEDRSTMDGSRDMHGTTVLCVRKAGKVCLQADGQVTLGNVVMKGNA RKLRQIGQDVIAGFAGSTADAITLFERLESKLEEYPGQLMRACVEMAKLWRTDKYLRKLE AVMIVADKNITLIITGNGDVLEPTEGGANDSVVGIGSGGHYAISAAKALLDVDGFDAEAI AQKAMLIAGEICIYTNTNFTKLILEEKDGKLEITEK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0077300.fa Sequence name : NF0077300 Sequence length : 276 VALUES OF COMPUTED PARAMETERS Coef20 : 5.212 CoefTot : 0.576 ChDiff : 3 ZoneTo : 75 KR : 9 DE : 1 CleavSite : 71 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.394 0.037 0.525 MesoH : -0.377 0.542 -0.272 0.325 MuHd_075 : 41.127 24.473 10.709 9.392 MuHd_095 : 38.680 26.374 10.766 9.305 MuHd_100 : 35.900 26.063 11.740 8.898 MuHd_105 : 30.008 23.626 11.337 8.374 Hmax_075 : 14.787 9.800 0.849 3.535 Hmax_095 : 8.400 17.900 4.331 5.970 Hmax_100 : 7.800 13.300 3.589 4.690 Hmax_105 : 4.100 11.200 3.918 4.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0064 0.9936 DFMC : 0.0055 0.9945 This protein is probably imported in chloroplast. f(Ser) = 0.1867 f(Arg) = 0.0800 CMi = 1.02564 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 276 NF0077300 MKRASXXXXXXXXSLIAFRNQTNKSFLSPFTTMTSSIVIGRRVSSRSSLNFMGNNYSNFDRNISSLYHTCLKSAAEDRST 80 MDGSRDMHGTTVLCVRKAGKVCLQADGQVTLGNVVMKGNARKLRQIGQDVIAGFAGSTADAITLFERLESKLEEYPGQLM 160 RACVEMAKLWRTDKYLRKLEAVMIVADKNITLIITGNGDVLEPTEGGANDSVVGIGSGGHYAISAAKALLDVDGFDAEAI 240 AQKAMLIAGEICIYTNTNFTKLILEEKDGKLEITEK 320 ................................................................................ 80 ...........................................P.................................... 160 ................................................................................ 240 .................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0077300 2 -----MK|RA 0.080 . NF0077300 3 ----MKR|AS 0.251 . NF0077300 19 XSLIAFR|NQ 0.074 . NF0077300 24 FRNQTNK|SF 0.093 . NF0077300 41 SSIVIGR|RV 0.103 . NF0077300 42 SIVIGRR|VS 0.110 . NF0077300 46 GRRVSSR|SS 0.165 . NF0077300 61 NYSNFDR|NI 0.128 . NF0077300 72 LYHTCLK|SA 0.085 . NF0077300 78 KSAAEDR|ST 0.231 . NF0077300 85 STMDGSR|DM 0.097 . NF0077300 96 TTVLCVR|KA 0.128 . NF0077300 97 TVLCVRK|AG 0.074 . NF0077300 100 CVRKAGK|VC 0.066 . NF0077300 117 LGNVVMK|GN 0.095 . NF0077300 121 VMKGNAR|KL 0.108 . NF0077300 122 MKGNARK|LR 0.092 . NF0077300 124 GNARKLR|QI 0.544 *ProP* NF0077300 147 AITLFER|LE 0.081 . NF0077300 151 FERLESK|LE 0.057 . NF0077300 161 YPGQLMR|AC 0.086 . NF0077300 168 ACVEMAK|LW 0.060 . NF0077300 171 EMAKLWR|TD 0.077 . NF0077300 174 KLWRTDK|YL 0.183 . NF0077300 177 RTDKYLR|KL 0.089 . NF0077300 178 TDKYLRK|LE 0.073 . NF0077300 188 VMIVADK|NI 0.064 . NF0077300 227 YAISAAK|AL 0.064 . NF0077300 243 AEAIAQK|AM 0.063 . NF0077300 261 TNTNFTK|LI 0.074 . NF0077300 267 KLILEEK|DG 0.061 . NF0077300 270 LEEKDGK|LE 0.058 . NF0077300 276 KLEITEK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >NF0077300 ATGAAAAGAGCATCCCGNNNNNNNNNNNNNNNNNNNNNNTCACTAATTGCTTTTCGTAAT CAAACAAACAAAAGCTTTCTTTCTCCATTCACTACTATGACCTCATCAATAGTGATTGGA CGTAGAGTATCATCCCGATCATCATTGAATTTTATGGGAAATAATTACAGCAATTTTGAT AGGAATATCTCCTCTTTGTATCATACTTGCTTGAAGAGCGCCGCAGAAGATAGGAGTACA ATGGATGGATCTAGAGACATGCACGGAACTACTGTATTATGTGTTCGTAAAGCTGGTAAA GTTTGTCTTCAAGCTGATGGACAAGTTACTCTCGGTAATGTTGTTATGAAAGGAAATGCT CGTAAATTGAGACAAATCGGCCAAGATGTAATTGCTGGTTTTGCTGGTTCTACTGCGGAC GCCATTACTTTGTTCGAAAGACTTGAGTCTAAGCTTGAAGAATATCCAGGACAACTGATG AGAGCTTGTGTGGAAATGGCTAAATTGTGGAGAACTGATAAATACTTGAGGAAATTGGAG GCTGTCATGATTGTGGCTGATAAAAACATTACACTGATTATTACTGGTAACGGAGATGTT TTGGAACCAACAGAGGGAGGAGCTAATGACAGTGTTGTCGGTATTGGAAGTGGTGGTCAC TATGCTATTTCTGCGGCGAAGGCCTTACTGGACGTCGATGGCTTTGATGCTGAAGCTATT GCACAAAAAGCCATGCTTATTGCTGGAGAGATTTGTATTTATACCAATACAAACTTTACA AAACTCATTCTCGAAGAGAAAGATGGTAAACTTGAAATTACAGAAAAGTAA
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  • Fasta :-

    MKRASXXXXXXXXSLIAFRNQTNKSFLSPFTTMTSSIVIGRRVSSRSSLNFMGNNYSNFD RNISSLYHTCLKSAAEDRSTMDGSRDMHGTTVLCVRKAGKVCLQADGQVTLGNVVMKGNA RKLRQIGQDVIAGFAGSTADAITLFERLESKLEEYPGQLMRACVEMAKLWRTDKYLRKLE AVMIVADKNITLIITGNGDVLEPTEGGANDSVVGIGSGGHYAISAAKALLDVDGFDAEAI AQKAMLIAGEICIYTNTNFTKLILEEKDGKLEITEK

  • title: active site
  • coordinates: T90,D106,Q108,K122,S217
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF007730044 SGRRVSSRSS0.997unspNF007730079 SAEDRSTMDG0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India