NF0080940 | 26s proteasome non-atpase regulatory subunit 4 homolog

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
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Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0080940	OTHER	0.999950	0.000039	0.000011

No Results

Fasta :-
>NF0080940 MKEQCMICIDNSEWMRNGDYAPSRLGAQVEAANLICGSKTQSNPETTIGVLTMAEENPSV KVAPTTDLGKLLSSLSSVEIGGKLQFSKALQIAYLVLKNRAPDQGTPNRRLVIFVGSPIE ENKDDLVKLGLRMKKNNVACDVINFGEVQENTAKLEAFINAVNRDDNSRMETVPPGPHIL SDMLFSSPIVGMGGAGVGAATGGAGVGTGEAGAGGGEFDFGVDPNLDPELAMAIRLSLEE EKRRQEREKQASASSSATTQPETGTASSSSTTAETSSTAGTSTQAVPTTAPPQEDEDVDM DDDDALEKALLLSKQEAGMVDEDDELQQALKMSIDEAQNKKKDENIEDIVEDQEFMQDLV GGLGKNVNSDEVLKKKKDEEKK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0080940.fa Sequence name : NF0080940 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 3.458 CoefTot : -0.113 ChDiff : -28 ZoneTo : 2 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.812 1.276 0.283 0.622 MesoH : -0.068 0.330 -0.226 0.330 MuHd_075 : 22.047 10.440 6.174 4.698 MuHd_095 : 15.049 7.650 6.684 2.210 MuHd_100 : 29.012 12.809 9.418 3.718 MuHd_105 : 34.663 14.426 10.222 4.332 Hmax_075 : 5.717 7.467 -0.150 3.360 Hmax_095 : -5.000 2.600 0.037 1.356 Hmax_100 : 4.000 8.000 1.987 1.990 Hmax_105 : 5.700 8.600 1.740 2.301 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9510 0.0490 DFMC : 0.8684 0.1316

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 NF0080940 MKEQCMICIDNSEWMRNGDYAPSRLGAQVEAANLICGSKTQSNPETTIGVLTMAEENPSVKVAPTTDLGKLLSSLSSVEI 80 GGKLQFSKALQIAYLVLKNRAPDQGTPNRRLVIFVGSPIEENKDDLVKLGLRMKKNNVACDVINFGEVQENTAKLEAFIN 160 AVNRDDNSRMETVPPGPHILSDMLFSSPIVGMGGAGVGAATGGAGVGTGEAGAGGGEFDFGVDPNLDPELAMAIRLSLEE 240 EKRRQEREKQASASSSATTQPETGTASSSSTTAETSSTAGTSTQAVPTTAPPQEDEDVDMDDDDALEKALLLSKQEAGMV 320 DEDDELQQALKMSIDEAQNKKKDENIEDIVEDQEFMQDLVGGLGKNVNSDEVLKKKKDEEKK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0080940 2 -----MK|EQ 0.061 . NF0080940 16 DNSEWMR|NG 0.093 . NF0080940 24 GDYAPSR|LG 0.105 . NF0080940 39 NLICGSK|TQ 0.062 . NF0080940 61 EENPSVK|VA 0.064 . NF0080940 70 PTTDLGK|LL 0.057 . NF0080940 83 SVEIGGK|LQ 0.057 . NF0080940 88 GKLQFSK|AL 0.070 . NF0080940 98 IAYLVLK|NR 0.061 . NF0080940 100 YLVLKNR|AP 0.116 . NF0080940 109 DQGTPNR|RL 0.081 . NF0080940 110 QGTPNRR|LV 0.160 . NF0080940 123 SPIEENK|DD 0.072 . NF0080940 128 NKDDLVK|LG 0.054 . NF0080940 132 LVKLGLR|MK 0.064 . NF0080940 134 KLGLRMK|KN 0.063 . NF0080940 135 LGLRMKK|NN 0.176 . NF0080940 154 VQENTAK|LE 0.056 . NF0080940 164 FINAVNR|DD 0.112 . NF0080940 169 NRDDNSR|ME 0.076 . NF0080940 235 ELAMAIR|LS 0.080 . NF0080940 242 LSLEEEK|RR 0.058 . NF0080940 243 SLEEEKR|RQ 0.147 . NF0080940 244 LEEEKRR|QE 0.138 . NF0080940 247 EKRRQER|EK 0.329 . NF0080940 249 RRQEREK|QA 0.109 . NF0080940 308 DDDALEK|AL 0.054 . NF0080940 314 KALLLSK|QE 0.054 . NF0080940 331 ELQQALK|MS 0.063 . NF0080940 340 IDEAQNK|KK 0.067 . NF0080940 341 DEAQNKK|KD 0.109 . NF0080940 342 EAQNKKK|DE 0.130 . NF0080940 365 LVGGLGK|NV 0.074 . NF0080940 374 NSDEVLK|KK 0.061 . NF0080940 375 SDEVLKK|KK 0.107 . NF0080940 376 DEVLKKK|KD 0.097 . NF0080940 377 EVLKKKK|DE 0.137 . NF0080940 381 KKKDEEK|K- 0.067 . NF0080940 382 KKDEEKK|-- 0.105 . ____________________________^_________________

Fasta :-
>NF0080940 ATGAAAGAACAGTGTATGATCTGTATTGATAATTCTGAATGGATGAGAAATGGAGATTAT GCTCCATCCAGATTGGGTGCTCAAGTTGAAGCCGCTAACTTGATTTGTGGAAGCAAAACA CAAAGTAATCCCGAAACAACCATCGGTGTTCTTACCATGGCTGAAGAGAATCCATCCGTT AAAGTTGCTCCAACCACCGATCTTGGCAAACTCCTTTCAAGCTTATCATCAGTAGAAATT GGAGGAAAATTACAATTTTCTAAAGCTCTTCAAATAGCGTATCTGGTATTGAAGAATAGA GCACCTGATCAGGGAACACCCAACAGAAGATTGGTCATCTTTGTGGGTAGTCCGATTGAG GAAAATAAGGACGATTTGGTAAAGTTGGGATTACGTATGAAAAAGAATAATGTGGCGTGT GATGTAATTAATTTTGGAGAGGTTCAAGAAAACACAGCAAAATTAGAAGCTTTTATTAAT GCAGTCAATAGAGATGATAATTCAAGAATGGAGACCGTTCCTCCTGGACCACACATTCTC TCCGATATGTTGTTCTCATCTCCAATTGTTGGAATGGGAGGTGCTGGAGTGGGTGCTGCG ACAGGAGGTGCTGGAGTCGGCACAGGAGAAGCAGGTGCTGGAGGTGGTGAATTTGACTTT GGTGTGGATCCAAACCTCGATCCCGAATTGGCTATGGCTATTCGTCTCTCTTTAGAAGAA GAAAAAAGACGACAAGAACGAGAGAAGCAAGCATCAGCATCATCGTCAGCAACAACTCAA CCAGAAACAGGAACAGCATCATCGTCAAGTACAACAGCTGAAACTAGTAGCACAGCAGGC ACATCGACACAAGCCGTTCCCACAACAGCTCCTCCTCAAGAGGATGAAGATGTGGATATG GACGACGATGACGCTCTCGAAAAGGCTCTCCTTCTCTCAAAACAAGAAGCAGGAATGGTC GATGAGGACGATGAATTACAACAAGCTTTAAAGATGTCTATTGACGAAGCTCAAAACAAG AAGAAGGATGAAAATATTGAGGACATTGTCGAAGACCAAGAATTCATGCAAGATTTGGTT GGTGGCTTAGGAAAGAATGTCAATTCGGATGAGGTTTTGAAAAAGAAGAAAGACGAAGAA AAGAAGTAA
Download Fasta

Fasta :-

MKEQCMICIDNSEWMRNGDYAPSRLGAQVEAANLICGSKTQSNPETTIGVLTMAEENPSV KVAPTTDLGKLLSSLSSVEIGGKLQFSKALQIAYLVLKNRAPDQGTPNRRLVIFVGSPIE ENKDDLVKLGLRMKKNNVACDVINFGEVQENTAKLEAFINAVNRDDNSRMETVPPGPHIL SDMLFSSPIVGMGGAGVGAATGGAGVGTGEAGAGGGEFDFGVDPNLDPELAMAIRLSLEE EKRRQEREKQASASSSATTQPETGTASSSSTTAETSSTAGTSTQAVPTTAPPQEDEDVDM DDDDALEKALLLSKQEAGMVDEDDELQQALKMSIDEAQNKKKDENIEDIVEDQEFMQDLV GGLGKNVNSDEVLKKKKDEEKK

SCOPe

title: metal ion-dependent adhesion site (MIDAS)
coordinates: D10,L84,G116

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0080940	T	278	0.767	0.243	NF0080940	T	272	0.763	0.053	NF0080940	T	265	0.758	0.059	NF0080940	T	271	0.757	0.018	NF0080940	T	275	0.754	0.046	NF0080940	T	281	0.749	0.018	NF0080940	T	263	0.744	0.036	NF0080940	T	283	0.735	0.073	NF0080940	S	267	0.712	0.030	NF0080940	S	268	0.711	0.079	NF0080940	S	269	0.700	0.021	NF0080940	S	277	0.697	0.026	NF0080940	S	276	0.694	0.034	NF0080940	S	270	0.689	0.022	NF0080940	T	259	0.684	0.077	NF0080940	T	258	0.679	0.301	NF0080940	S	282	0.655	0.038	NF0080940	T	288	0.634	0.708	NF0080940	T	289	0.622	0.465	NF0080940	S	256	0.553	0.031	NF0080940	T	52	0.543	0.061	NF0080940	S	255	0.540	0.040	NF0080940	S	254	0.530	0.145	NF0080940	S	252	0.503	0.048

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0080940	T	278	0.767	0.243	NF0080940	T	272	0.763	0.053	NF0080940	T	265	0.758	0.059	NF0080940	T	271	0.757	0.018	NF0080940	T	275	0.754	0.046	NF0080940	T	281	0.749	0.018	NF0080940	T	263	0.744	0.036	NF0080940	T	283	0.735	0.073	NF0080940	S	267	0.712	0.030	NF0080940	S	268	0.711	0.079	NF0080940	S	269	0.700	0.021	NF0080940	S	277	0.697	0.026	NF0080940	S	276	0.694	0.034	NF0080940	S	270	0.689	0.022	NF0080940	T	259	0.684	0.077	NF0080940	T	258	0.679	0.301	NF0080940	S	282	0.655	0.038	NF0080940	T	288	0.634	0.708	NF0080940	T	289	0.622	0.465	NF0080940	S	256	0.553	0.031	NF0080940	T	52	0.543	0.061	NF0080940	S	255	0.540	0.040	NF0080940	S	254	0.530	0.145	NF0080940	S	252	0.503	0.048

	ID	Site	Peptide	Score	Method
	NF0080940	237 S	AIRLSLEEE	0.997	unsp

NF0080940 | 26s proteasome non-atpase regulatory subunit 4 homolog

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

SCOPe

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India