NF0090220 | carboxypeptidase pm20d1

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0016787
Computed_GO_Functions: hydrolase activity
Computed_GO_Process_IDs: GO:0008152
Computed_GO_Processes: metabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0090220	OTHER	0.781480	0.216078	0.002442

No Results

Fasta :-
>NF0090220 MMKPIVKSILQFLFFALMGLIGLLSVRTYLFIQEINRNIQQDFDPNRIKEGKSHVQHHGS YSSFLPHGFQWDEKERNAAIHRLQRAIQFPTIHHVKDYEIFNKLFDQMFKDFPLLFSNHH HHHHGGGGPILKEVTLDILNSLNGGGGGSSIENINDGNGRTSGSNSSDDDDEDENGTSFS SNHLAARVFVWKSNNNHQNKRPIMFTGHVDVVPINDESKWIYPPFSGMIVNDSSQQQQQQ QQYLYGRGTLDDKNGVYEILEALNQLRRENLLQQPDRDIYVVIGMDEEIGGEHGAKKVTS YFLKKNITFAFILDEGGMIADQQFPTIHSPVAFVANAEKGFCNFEIKVQCEPGHSSMPSI HHTCISKLSKAMIQIENNPMKAHLSILRNMMSQLAPLSSSLVFKMIAANMDLFSPFLDFA LNYLGGAPNAVTRTTFAPTIISAGVAANVLPSTGTLLVNTRLSPYDRIEDVLKHLEKILG GVGNVGDAPSSTTTTTTTTPHTTNITITVQKTTCDEASRVSCHDCLEFNIIKKSIHQMQP DAFVVPYLFIAGSDSKHYRKLSDYAYGYLPMRLMKANQDLARIHGHNERISTQNYLESVN VYGAIILNANEMLKERP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0090220.fa Sequence name : NF0090220 Sequence length : 617 VALUES OF COMPUTED PARAMETERS Coef20 : 4.343 CoefTot : -0.092 ChDiff : -8 ZoneTo : 33 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.212 2.282 0.338 0.835 MesoH : 0.596 0.810 -0.102 0.372 MuHd_075 : 23.254 15.809 7.319 6.243 MuHd_095 : 30.849 29.254 10.644 8.000 MuHd_100 : 26.102 25.360 9.452 6.904 MuHd_105 : 23.673 19.285 7.302 5.655 Hmax_075 : 20.200 21.800 4.202 7.880 Hmax_095 : 21.525 28.787 5.155 7.910 Hmax_100 : 21.100 26.400 4.799 7.920 Hmax_105 : 18.900 21.262 2.973 6.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4786 0.5214 DFMC : 0.5815 0.4185

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 617 NF0090220 MMKPIVKSILQFLFFALMGLIGLLSVRTYLFIQEINRNIQQDFDPNRIKEGKSHVQHHGSYSSFLPHGFQWDEKERNAAI 80 HRLQRAIQFPTIHHVKDYEIFNKLFDQMFKDFPLLFSNHHHHHHGGGGPILKEVTLDILNSLNGGGGGSSIENINDGNGR 160 TSGSNSSDDDDEDENGTSFSSNHLAARVFVWKSNNNHQNKRPIMFTGHVDVVPINDESKWIYPPFSGMIVNDSSQQQQQQ 240 QQYLYGRGTLDDKNGVYEILEALNQLRRENLLQQPDRDIYVVIGMDEEIGGEHGAKKVTSYFLKKNITFAFILDEGGMIA 320 DQQFPTIHSPVAFVANAEKGFCNFEIKVQCEPGHSSMPSIHHTCISKLSKAMIQIENNPMKAHLSILRNMMSQLAPLSSS 400 LVFKMIAANMDLFSPFLDFALNYLGGAPNAVTRTTFAPTIISAGVAANVLPSTGTLLVNTRLSPYDRIEDVLKHLEKILG 480 GVGNVGDAPSSTTTTTTTTPHTTNITITVQKTTCDEASRVSCHDCLEFNIIKKSIHQMQPDAFVVPYLFIAGSDSKHYRK 560 LSDYAYGYLPMRLMKANQDLARIHGHNERISTQNYLESVNVYGAIILNANEMLKERP 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ......................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0090220 3 ----MMK|PI 0.072 . NF0090220 7 MMKPIVK|SI 0.080 . NF0090220 27 IGLLSVR|TY 0.070 . NF0090220 37 FIQEINR|NI 0.080 . NF0090220 47 QDFDPNR|IK 0.094 . NF0090220 49 FDPNRIK|EG 0.059 . NF0090220 52 NRIKEGK|SH 0.099 . NF0090220 74 GFQWDEK|ER 0.066 . NF0090220 76 QWDEKER|NA 0.099 . NF0090220 82 RNAAIHR|LQ 0.091 . NF0090220 85 AIHRLQR|AI 0.216 . NF0090220 96 PTIHHVK|DY 0.079 . NF0090220 103 DYEIFNK|LF 0.070 . NF0090220 110 LFDQMFK|DF 0.059 . NF0090220 132 GGGPILK|EV 0.067 . NF0090220 160 INDGNGR|TS 0.084 . NF0090220 187 SNHLAAR|VF 0.089 . NF0090220 192 ARVFVWK|SN 0.091 . NF0090220 200 NNNHQNK|RP 0.067 . NF0090220 201 NNHQNKR|PI 0.223 . NF0090220 219 PINDESK|WI 0.073 . NF0090220 247 QQYLYGR|GT 0.096 . NF0090220 253 RGTLDDK|NG 0.052 . NF0090220 267 EALNQLR|RE 0.066 . NF0090220 268 ALNQLRR|EN 0.113 . NF0090220 277 LLQQPDR|DI 0.158 . NF0090220 296 GGEHGAK|KV 0.075 . NF0090220 297 GEHGAKK|VT 0.124 . NF0090220 304 VTSYFLK|KN 0.068 . NF0090220 305 TSYFLKK|NI 0.109 . NF0090220 339 FVANAEK|GF 0.062 . NF0090220 347 FCNFEIK|VQ 0.063 . NF0090220 367 HHTCISK|LS 0.059 . NF0090220 370 CISKLSK|AM 0.088 . NF0090220 381 IENNPMK|AH 0.084 . NF0090220 388 AHLSILR|NM 0.071 . NF0090220 404 SSSLVFK|MI 0.104 . NF0090220 433 APNAVTR|TT 0.107 . NF0090220 461 TLLVNTR|LS 0.067 . NF0090220 467 RLSPYDR|IE 0.094 . NF0090220 473 RIEDVLK|HL 0.091 . NF0090220 477 VLKHLEK|IL 0.082 . NF0090220 511 ITITVQK|TT 0.067 . NF0090220 519 TCDEASR|VS 0.069 . NF0090220 532 LEFNIIK|KS 0.058 . NF0090220 533 EFNIIKK|SI 0.245 . NF0090220 556 IAGSDSK|HY 0.060 . NF0090220 559 SDSKHYR|KL 0.188 . NF0090220 560 DSKHYRK|LS 0.088 . NF0090220 572 YGYLPMR|LM 0.076 . NF0090220 575 LPMRLMK|AN 0.146 . NF0090220 582 ANQDLAR|IH 0.132 . NF0090220 589 IHGHNER|IS 0.091 . NF0090220 614 NANEMLK|ER 0.057 . NF0090220 616 NEMLKER|P- 0.091 . ____________________________^_________________

Fasta :-
>NF0090220 ATGATGAAACCAATTGTCAAATCCATTCTTCAATTTCTCTTCTTTGCTTTGATGGGTCTG ATTGGTTTGTTGAGTGTGAGAACCTATCTCTTCATTCAAGAAATCAATCGGAATATTCAA CAAGATTTTGATCCGAATCGTATCAAGGAAGGAAAATCACATGTTCAACATCATGGTTCA TATTCCTCCTTTCTTCCACATGGATTCCAATGGGATGAAAAAGAAAGAAATGCTGCCATT CACAGATTACAACGAGCCATTCAATTTCCAACCATTCACCATGTCAAGGATTATGAAATA TTTAACAAATTATTTGATCAAATGTTTAAAGACTTTCCATTACTCTTTTCCAACCATCAT CATCATCATCACGGTGGTGGTGGTCCAATTCTCAAAGAAGTGACTCTTGATATTTTGAAT AGTTTAAATGGTGGTGGTGGTGGTAGTAGTATTGAGAATATCAATGATGGGAATGGTCGT ACTAGTGGTAGTAATAGTAGTGATGATGATGATGAGGATGAGAATGGTACTTCTTTTTCA TCCAATCATCTTGCTGCACGTGTCTTTGTTTGGAAGTCAAATAACAACCATCAAAACAAA CGACCCATCATGTTCACAGGTCATGTCGATGTAGTTCCAATTAATGATGAATCGAAATGG ATCTATCCACCATTTAGTGGAATGATTGTCAATGATTCATCTCAACAACAACAACAACAA CAACAATACTTGTATGGACGTGGTACATTGGATGATAAAAATGGTGTTTATGAAATTCTT GAAGCATTGAATCAATTGAGAAGAGAGAATTTATTACAACAACCAGATCGAGATATTTAT GTAGTGATTGGAATGGATGAAGAAATTGGCGGAGAACATGGAGCAAAGAAGGTCACTTCT TACTTTTTAAAGAAAAATATCACATTTGCATTCATTCTCGATGAAGGTGGAATGATTGCC GATCAACAATTCCCAACCATTCATTCACCAGTAGCATTTGTAGCCAATGCAGAGAAAGGT TTTTGTAATTTTGAAATCAAAGTACAATGTGAACCAGGACATTCTTCAATGCCATCCATT CATCATACCTGTATTTCTAAATTAAGTAAGGCCATGATACAAATTGAAAACAATCCAATG AAAGCTCATCTCTCAATTCTTAGAAATATGATGAGTCAATTAGCTCCACTTTCATCCTCT CTTGTATTCAAGATGATTGCAGCGAATATGGATCTATTTTCACCTTTTTTAGATTTTGCT TTGAATTATTTAGGAGGAGCACCAAATGCAGTGACTCGTACTACCTTTGCACCGACCATT ATTTCAGCTGGTGTTGCTGCCAATGTGTTACCTTCTACAGGTACTCTGTTAGTGAATACT CGATTATCACCCTATGATCGTATTGAGGATGTTTTGAAACATTTAGAGAAGATTTTGGGT GGTGTTGGCAATGTTGGAGATGCACCATCATCGACGACGACGACGACGACGACTACTCCT CATACTACTAATATTACTATCACGGTACAAAAAACAACTTGTGATGAAGCAAGCCGTGTC TCATGCCACGATTGTTTAGAATTTAATATTATCAAGAAATCAATCCATCAAATGCAACCT GATGCATTTGTAGTACCTTATTTATTTATTGCTGGTAGTGATTCCAAGCATTATCGAAAA TTAAGTGACTATGCTTATGGTTATTTACCAATGAGACTCATGAAGGCCAATCAAGATCTT GCTCGTATTCATGGACACAATGAGAGAATTAGTACTCAAAATTATTTAGAATCTGTCAAT GTGTATGGTGCAATCATTCTCAATGCTAATGAAATGCTCAAAGAAAGACCTTAA
Download Fasta

Fasta :-

MMKPIVKSILQFLFFALMGLIGLLSVRTYLFIQEINRNIQQDFDPNRIKEGKSHVQHHGS YSSFLPHGFQWDEKERNAAIHRLQRAIQFPTIHHVKDYEIFNKLFDQMFKDFPLLFSNHH HHHHGGGGPILKEVTLDILNSLNGGGGGSSIENINDGNGRTSGSNSSDDDDEDENGTSFS SNHLAARVFVWKSNNNHQNKRPIMFTGHVDVVPINDESKWIYPPFSGMIVNDSSQQQQQQ QQYLYGRGTLDDKNGVYEILEALNQLRRENLLQQPDRDIYVVIGMDEEIGGEHGAKKVTS YFLKKNITFAFILDEGGMIADQQFPTIHSPVAFVANAEKGFCNFEIKVQCEPGHSSMPSI HHTCISKLSKAMIQIENNPMKAHLSILRNMMSQLAPLSSSLVFKMIAANMDLFSPFLDFA LNYLGGAPNAVTRTTFAPTIISAGVAANVLPSTGTLLVNTRLSPYDRIEDVLKHLEKILG GVGNVGDAPSSTTTTTTTTPHTTNITITVQKTTCDEASRVSCHDCLEFNIIKKSIHQMQP DAFVVPYLFIAGSDSKHYRKLSDYAYGYLPMRLMKANQDLARIHGHNERISTQNYLESVN VYGAIILNANEMLKERP

Bacterial dinuclear zinc exopeptidases

title: metal binding site
coordinates: H208,D251,E287,E288,D314,H584

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0090220	T	503	0.637	0.078	NF0090220	T	498	0.623	0.048	NF0090220	T	495	0.620	0.046	NF0090220	T	494	0.618	0.038	NF0090220	T	493	0.613	0.040	NF0090220	T	499	0.613	0.056	NF0090220	T	497	0.609	0.205	NF0090220	T	502	0.608	0.070	NF0090220	T	496	0.600	0.086	NF0090220	T	506	0.588	0.079	NF0090220	T	492	0.584	0.074	NF0090220	T	508	0.521	0.156

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0090220	T	503	0.637	0.078	NF0090220	T	498	0.623	0.048	NF0090220	T	495	0.620	0.046	NF0090220	T	494	0.618	0.038	NF0090220	T	493	0.613	0.040	NF0090220	T	499	0.613	0.056	NF0090220	T	497	0.609	0.205	NF0090220	T	502	0.608	0.070	NF0090220	T	496	0.600	0.086	NF0090220	T	506	0.588	0.079	NF0090220	T	492	0.584	0.074	NF0090220	T	508	0.521	0.156

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0090220	167 S	GSNSSDDDD	0.995	unsp	NF0090220	167 S	GSNSSDDDD	0.995	unsp	NF0090220	167 S	GSNSSDDDD	0.995	unsp	NF0090220	463 S	NTRLSPYDR	0.998	unsp	NF0090220	521 S	ASRVSCHDC	0.993	unsp	NF0090220	162 S	NGRTSGSNS	0.996	unsp	NF0090220	166 S	SGSNSSDDD	0.997	unsp

NF0090220 | carboxypeptidase pm20d1

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0016787

Computed_GO_Functions: hydrolase activity

Computed_GO_Process_IDs: GO:0008152

Computed_GO_Processes: metabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Bacterial dinuclear zinc exopeptidases

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India