NF0092820 | ubiquitin carboxyl-terminal hydrolase isozyme l3-like

UniProt_ID:

Computed_GO_Component_IDs: GO:0005622
Computed_GO_Components: intracellular
Computed_GO_Function_IDs: GO:0004843
Computed_GO_Functions: thiol-dependent ubiquitin-specific protease activity
Computed_GO_Process_IDs: GO:0006511
Computed_GO_Processes: ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0092820	OTHER	0.999976	0.000022	0.000002

No Results

Fasta :-
>NF0092820 MSTKTWFPLESNPDLMNSYASKLGLGTDSAYEYVDVFGLDDELLEMVPRPVVAVMLLFPL TKENQEVQSKEDAESEKQKDTFPKDLFFMKQTIGNACGTVAIVHSLANNASLLNIDKDSF LKDFLNASQGKTPDEIAKALEKDNRVEEAHESSALSSENSSAVVEDTNLHFVCFVEKSGK VFELDGRRNHPCYRGESSGDLLKDVVKVVRHYMQLNPEQLYFNLVALVKKP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0092820.fa Sequence name : NF0092820 Sequence length : 231 VALUES OF COMPUTED PARAMETERS Coef20 : 3.712 CoefTot : -0.132 ChDiff : -12 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.841 1.624 0.039 0.531 MesoH : -1.148 -0.014 -0.585 0.123 MuHd_075 : 21.411 10.886 3.429 3.605 MuHd_095 : 10.700 7.226 2.333 0.980 MuHd_100 : 19.007 9.935 4.272 2.512 MuHd_105 : 23.979 11.035 6.011 3.476 Hmax_075 : 3.500 2.100 -3.220 1.843 Hmax_095 : 7.263 0.087 -2.293 2.012 Hmax_100 : 8.600 5.600 -1.004 2.770 Hmax_105 : 11.317 5.250 -0.897 2.847 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9759 0.0241 DFMC : 0.9595 0.0405

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 231 NF0092820 MSTKTWFPLESNPDLMNSYASKLGLGTDSAYEYVDVFGLDDELLEMVPRPVVAVMLLFPLTKENQEVQSKEDAESEKQKD 80 TFPKDLFFMKQTIGNACGTVAIVHSLANNASLLNIDKDSFLKDFLNASQGKTPDEIAKALEKDNRVEEAHESSALSSENS 160 SAVVEDTNLHFVCFVEKSGKVFELDGRRNHPCYRGESSGDLLKDVVKVVRHYMQLNPEQLYFNLVALVKKP 240 ................................................................................ 80 ................................................................................ 160 ....................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0092820 4 ---MSTK|TW 0.073 . NF0092820 22 MNSYASK|LG 0.061 . NF0092820 49 LLEMVPR|PV 0.123 . NF0092820 62 LLFPLTK|EN 0.063 . NF0092820 70 NQEVQSK|ED 0.066 . NF0092820 77 EDAESEK|QK 0.073 . NF0092820 79 AESEKQK|DT 0.124 . NF0092820 84 QKDTFPK|DL 0.091 . NF0092820 90 KDLFFMK|QT 0.069 . NF0092820 117 SLLNIDK|DS 0.061 . NF0092820 122 DKDSFLK|DF 0.060 . NF0092820 131 LNASQGK|TP 0.070 . NF0092820 138 TPDEIAK|AL 0.081 . NF0092820 142 IAKALEK|DN 0.075 . NF0092820 145 ALEKDNR|VE 0.105 . NF0092820 177 FVCFVEK|SG 0.072 . NF0092820 180 FVEKSGK|VF 0.058 . NF0092820 187 VFELDGR|RN 0.075 . NF0092820 188 FELDGRR|NH 0.075 . NF0092820 194 RNHPCYR|GE 0.107 . NF0092820 203 SSGDLLK|DV 0.095 . NF0092820 207 LLKDVVK|VV 0.072 . NF0092820 210 DVVKVVR|HY 0.097 . NF0092820 229 NLVALVK|KP 0.058 . NF0092820 230 LVALVKK|P- 0.102 . ____________________________^_________________

Fasta :-
>NF0092820 ATGTCAACAAAAACTTGGTTTCCATTGGAATCAAATCCAGATCTAATGAATTCATATGCA AGTAAATTAGGTCTCGGAACAGATAGTGCTTATGAATATGTTGATGTTTTTGGGCTTGAT GACGAGCTATTAGAAATGGTTCCACGTCCTGTTGTAGCCGTAATGCTCTTGTTCCCTCTC ACGAAAGAAAACCAAGAGGTACAATCAAAAGAAGATGCTGAATCTGAAAAGCAAAAAGAT ACATTCCCCAAAGACTTGTTCTTTATGAAACAAACAATCGGAAATGCGTGTGGAACTGTT GCAATTGTACATTCTTTGGCTAACAATGCTTCTCTGTTGAATATTGACAAAGACAGTTTT TTGAAAGACTTTCTCAATGCTAGCCAAGGAAAAACACCTGACGAGATCGCTAAAGCATTA GAAAAGGACAACAGAGTTGAAGAAGCTCATGAAAGCAGTGCTTTATCTTCGGAGAACTCT TCTGCTGTTGTTGAGGACACAAACTTGCACTTTGTTTGTTTTGTAGAAAAAAGTGGCAAA GTATTTGAGTTGGATGGAAGAAGAAATCATCCATGCTATCGAGGAGAGAGCTCTGGCGAT TTATTAAAGGATGTCGTGAAAGTTGTGCGACATTACATGCAACTTAACCCAGAGCAATTG TATTTCAATTTGGTTGCTTTGGTCAAGAAGCCATAA
Download Fasta

Fasta :-

MSTKTWFPLESNPDLMNSYASKLGLGTDSAYEYVDVFGLDDELLEMVPRPVVAVMLLFPL TKENQEVQSKEDAESEKQKDTFPKDLFFMKQTIGNACGTVAIVHSLANNASLLNIDKDSF LKDFLNASQGKTPDEIAKALEKDNRVEEAHESSALSSENSSAVVEDTNLHFVCFVEKSGK VFELDGRRNHPCYRGESSGDLLKDVVKVVRHYMQLNPEQLYFNLVALVKKP

Ubiquitin carboxyl-terminal hydrolase UCH-L

title: catalytic site
coordinates: Q91,C97,H170,D185

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0092820	T	3	0.554	0.033	NF0092820	T	5	0.512	0.023

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0092820	T	3	0.554	0.033	NF0092820	T	5	0.512	0.023

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0092820	156 S	SSALSSENS	0.995	unsp	NF0092820	156 S	SSALSSENS	0.995	unsp	NF0092820	156 S	SSALSSENS	0.995	unsp	NF0092820	197 S	YRGESSGDL	0.993	unsp	NF0092820	69 S	QEVQSKEDA	0.997	unsp	NF0092820	75 S	EDAESEKQK	0.996	unsp

NF0092820 | ubiquitin carboxyl-terminal hydrolase isozyme l3-like

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005622

Computed_GO_Components: intracellular

Computed_GO_Function_IDs: GO:0004843

Computed_GO_Functions: thiol-dependent ubiquitin-specific protease activity

Computed_GO_Process_IDs: GO:0006511

Computed_GO_Processes: ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ubiquitin carboxyl-terminal hydrolase UCH-L

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India