NF0099990 | cathepsin b

_IDPredictionOTHERSPmTPCS_Position
NF0099990SP0.1024410.8973910.000168CS pos: 33-34. LQA-LE. Pr: 0.1942
No Results

  • Fasta :-

    >NF0099990 MKVIPTPFLKAFLFIASLILLIIIGSSSTSLQALEILNLDSSSDPLVHDEAFIQLINKYA KTWQAGKSKFFEGKRLSHARRLIGLGLPTPEQRASYPKKNSLMMGEEANSLEKYLVKMDA LPDSYNAANDSNYYMCQQLHRIRNQEQCGSCWAFSISEMVADRFCIGTRGKINTIMSPQW MVSCDTADNGCNGGEFPTAFQFVETTGLVSDGCVPYQSGNGFVPPCPNSCANGEDINVRY RTKNSRNFDVNDMKSVQASILANGPVISGFKVYRDFYNYRSGVYKHVAGGLVGGHAIKVV GWGVTQSNVPYWIVANSWSDEWGMNGYFWILRGTNECSIEENMWETIPAL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0099990.fa Sequence name : NF0099990 Sequence length : 350 VALUES OF COMPUTED PARAMETERS Coef20 : 4.495 CoefTot : 0.700 ChDiff : -1 ZoneTo : 34 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.359 2.871 0.502 0.921 MesoH : -0.143 0.569 -0.237 0.307 MuHd_075 : 20.698 21.646 6.148 6.475 MuHd_095 : 24.470 20.177 8.123 7.180 MuHd_100 : 21.990 17.995 7.009 6.661 MuHd_105 : 17.824 17.901 5.936 5.931 Hmax_075 : 22.000 26.425 4.713 8.500 Hmax_095 : 19.900 22.700 4.301 7.840 Hmax_100 : 21.400 24.700 4.657 8.320 Hmax_105 : 20.800 26.717 5.201 8.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8181 0.1819 DFMC : 0.8842 0.1158
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 350 NF0099990 MKVIPTPFLKAFLFIASLILLIIIGSSSTSLQALEILNLDSSSDPLVHDEAFIQLINKYAKTWQAGKSKFFEGKRLSHAR 80 RLIGLGLPTPEQRASYPKKNSLMMGEEANSLEKYLVKMDALPDSYNAANDSNYYMCQQLHRIRNQEQCGSCWAFSISEMV 160 ADRFCIGTRGKINTIMSPQWMVSCDTADNGCNGGEFPTAFQFVETTGLVSDGCVPYQSGNGFVPPCPNSCANGEDINVRY 240 RTKNSRNFDVNDMKSVQASILANGPVISGFKVYRDFYNYRSGVYKHVAGGLVGGHAIKVVGWGVTQSNVPYWIVANSWSD 320 EWGMNGYFWILRGTNECSIEENMWETIPAL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0099990 2 -----MK|VI 0.060 . NF0099990 10 IPTPFLK|AF 0.058 . NF0099990 58 FIQLINK|YA 0.071 . NF0099990 61 LINKYAK|TW 0.081 . NF0099990 67 KTWQAGK|SK 0.075 . NF0099990 69 WQAGKSK|FF 0.089 . NF0099990 74 SKFFEGK|RL 0.084 . NF0099990 75 KFFEGKR|LS 0.116 . NF0099990 80 KRLSHAR|RL 0.108 . NF0099990 81 RLSHARR|LI 0.378 . NF0099990 93 LPTPEQR|AS 0.097 . NF0099990 98 QRASYPK|KN 0.075 . NF0099990 99 RASYPKK|NS 0.149 . NF0099990 113 EANSLEK|YL 0.062 . NF0099990 117 LEKYLVK|MD 0.055 . NF0099990 141 MCQQLHR|IR 0.094 . NF0099990 143 QQLHRIR|NQ 0.093 . NF0099990 163 SEMVADR|FC 0.097 . NF0099990 169 RFCIGTR|GK 0.089 . NF0099990 171 CIGTRGK|IN 0.063 . NF0099990 239 GEDINVR|YR 0.086 . NF0099990 241 DINVRYR|TK 0.081 . NF0099990 243 NVRYRTK|NS 0.059 . NF0099990 246 YRTKNSR|NF 0.092 . NF0099990 254 FDVNDMK|SV 0.102 . NF0099990 271 PVISGFK|VY 0.053 . NF0099990 274 SGFKVYR|DF 0.131 . NF0099990 280 RDFYNYR|SG 0.103 . NF0099990 285 YRSGVYK|HV 0.161 . NF0099990 298 VGGHAIK|VV 0.095 . NF0099990 332 GYFWILR|GT 0.079 . ____________________________^_________________

  • Fasta :-

    >NF0099990 ATGAAAGTAATCCCAACACCATTCCTAAAGGCGTTCCTTTTCATCGCCTCTCTCATTCTT CTCATCATCATTGGTAGTAGCAGCACCTCTCTACAGGCTCTAGAAATTCTGAATTTAGAT TCTTCTTCGGATCCTCTAGTTCATGATGAAGCCTTCATTCAACTCATTAACAAGTACGCA AAAACATGGCAAGCAGGAAAGAGTAAATTCTTTGAAGGTAAACGATTGAGTCATGCGAGA AGGCTCATTGGTTTGGGTTTACCAACGCCCGAACAAAGAGCCTCTTATCCAAAGAAGAAT TCTTTGATGATGGGTGAGGAAGCAAACAGTTTGGAAAAGTATTTGGTCAAGATGGATGCA TTGCCTGATTCGTACAATGCTGCCAATGATTCAAATTATTATATGTGTCAGCAATTGCAC CGAATTAGAAATCAGGAACAATGTGGTTCTTGTTGGGCTTTCTCTATTTCAGAAATGGTT GCGGATCGTTTTTGTATTGGAACAAGAGGTAAAATTAATACCATCATGTCACCACAATGG ATGGTGAGCTGTGATACTGCTGACAATGGATGCAATGGAGGAGAATTCCCAACTGCTTTC CAATTTGTTGAGACAACTGGTTTGGTCTCTGATGGCTGTGTCCCATATCAATCTGGAAAT GGCTTTGTTCCACCATGCCCAAATAGTTGTGCCAACGGAGAAGATATTAATGTGAGATAT AGAACAAAGAATTCACGTAATTTTGATGTCAACGATATGAAGTCAGTTCAAGCTAGTATA CTTGCAAATGGTCCTGTCATTTCTGGATTTAAGGTATATCGTGACTTCTATAATTACAGA TCCGGAGTGTACAAACATGTTGCAGGAGGCCTTGTTGGTGGACATGCAATCAAGGTTGTG GGTTGGGGTGTCACTCAATCCAATGTACCTTATTGGATTGTTGCCAATAGTTGGTCTGAT GAATGGGGAATGAATGGTTACTTTTGGATTTTGAGAGGAACCAACGAATGTTCAATTGAG GAGAATATGTGGGAGACAATTCCAGCATTGTAA
  • Download Fasta

  • Fasta :-

    MKVIPTPFLKAFLFIASLILLIIIGSSSTSLQALEILNLDSSSDPLVHDEAFIQLINKYA KTWQAGKSKFFEGKRLSHARRLIGLGLPTPEQRASYPKKNSLMMGEEANSLEKYLVKMDA LPDSYNAANDSNYYMCQQLHRIRNQEQCGSCWAFSISEMVADRFCIGTRGKINTIMSPQW MVSCDTADNGCNGGEFPTAFQFVETTGLVSDGCVPYQSGNGFVPPCPNSCANGEDINVRY RTKNSRNFDVNDMKSVQASILANGPVISGFKVYRDFYNYRSGVYKHVAGGLVGGHAIKVV GWGVTQSNVPYWIVANSWSDEWGMNGYFWILRGTNECSIEENMWETIPAL

  • title: active site
  • coordinates: Q145,C151,H295,N316
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India