NF0109410 | inactive rhomboid protein 1-like

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0109410OTHER0.9930940.0057710.001134
No Results

  • Fasta :-

    >NF0109410 MVIFMPSLPFVSCQKPSRTKKMAEQPNGTTNQSHNNFYKDAFTERYIDELDNTSFTSFEL KSQPSIQQRKPVQNYSVEYDTTKDPNLEDPMDLGEGKSKYTADQTQIDGENQKKKKNRMT DRIISFPYWTALTCVAEVTVFVAMCIVGKGIDDPLNNPMIGPKQEIVIQFGAKDNSLIRA NGSEFWRFFVFMFIHQSVLILLFNLMWLLTTVRKTEGVWKFPRMAVIYMLSGIGGGLLSS VFSFDQISTGSTSCIVGIISASLAELILNWDVVFNPFKLLLSVIMQLLVFFIIGLLPTVD QFAHIGGFICGFLSGVMLCARKQKPDLEKRWAKFTIIVARAFAAVLLVIYFALFFPIFYG LIPMKCEACYWLDPTWAMYFGDNDE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0109410.fa Sequence name : NF0109410 Sequence length : 385 VALUES OF COMPUTED PARAMETERS Coef20 : 4.203 CoefTot : -2.498 ChDiff : 0 ZoneTo : 39 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.482 2.794 0.445 0.973 MesoH : 1.146 1.548 0.119 0.600 MuHd_075 : 25.405 16.476 9.342 5.504 MuHd_095 : 37.615 17.983 9.896 5.847 MuHd_100 : 37.560 18.355 10.342 5.864 MuHd_105 : 38.545 17.036 11.169 5.782 Hmax_075 : 1.400 -0.933 -0.492 1.552 Hmax_095 : 7.300 0.200 -2.012 1.950 Hmax_100 : 11.500 2.700 0.094 2.300 Hmax_105 : 9.100 -0.117 -0.388 1.350 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7023 0.2977 DFMC : 0.6351 0.3649
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 385 NF0109410 MVIFMPSLPFVSCQKPSRTKKMAEQPNGTTNQSHNNFYKDAFTERYIDELDNTSFTSFELKSQPSIQQRKPVQNYSVEYD 80 TTKDPNLEDPMDLGEGKSKYTADQTQIDGENQKKKKNRMTDRIISFPYWTALTCVAEVTVFVAMCIVGKGIDDPLNNPMI 160 GPKQEIVIQFGAKDNSLIRANGSEFWRFFVFMFIHQSVLILLFNLMWLLTTVRKTEGVWKFPRMAVIYMLSGIGGGLLSS 240 VFSFDQISTGSTSCIVGIISASLAELILNWDVVFNPFKLLLSVIMQLLVFFIIGLLPTVDQFAHIGGFICGFLSGVMLCA 320 RKQKPDLEKRWAKFTIIVARAFAAVLLVIYFALFFPIFYGLIPMKCEACYWLDPTWAMYFGDNDE 400 ....................P........................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0109410 15 PFVSCQK|PS 0.060 . NF0109410 18 SCQKPSR|TK 0.092 . NF0109410 20 QKPSRTK|KM 0.061 . NF0109410 21 KPSRTKK|MA 0.713 *ProP* NF0109410 39 SHNNFYK|DA 0.122 . NF0109410 45 KDAFTER|YI 0.143 . NF0109410 61 FTSFELK|SQ 0.080 . NF0109410 69 QPSIQQR|KP 0.108 . NF0109410 70 PSIQQRK|PV 0.096 . NF0109410 83 VEYDTTK|DP 0.067 . NF0109410 97 MDLGEGK|SK 0.084 . NF0109410 99 LGEGKSK|YT 0.076 . NF0109410 113 IDGENQK|KK 0.057 . NF0109410 114 DGENQKK|KK 0.089 . NF0109410 115 GENQKKK|KN 0.131 . NF0109410 116 ENQKKKK|NR 0.111 . NF0109410 118 QKKKKNR|MT 0.210 . NF0109410 122 KNRMTDR|II 0.121 . NF0109410 149 AMCIVGK|GI 0.080 . NF0109410 163 NPMIGPK|QE 0.070 . NF0109410 173 VIQFGAK|DN 0.079 . NF0109410 179 KDNSLIR|AN 0.110 . NF0109410 187 NGSEFWR|FF 0.104 . NF0109410 213 WLLTTVR|KT 0.080 . NF0109410 214 LLTTVRK|TE 0.073 . NF0109410 220 KTEGVWK|FP 0.068 . NF0109410 223 GVWKFPR|MA 0.119 . NF0109410 278 VVFNPFK|LL 0.064 . NF0109410 321 GVMLCAR|KQ 0.076 . NF0109410 322 VMLCARK|QK 0.070 . NF0109410 324 LCARKQK|PD 0.143 . NF0109410 329 QKPDLEK|RW 0.060 . NF0109410 330 KPDLEKR|WA 0.182 . NF0109410 333 LEKRWAK|FT 0.245 . NF0109410 340 FTIIVAR|AF 0.120 . NF0109410 365 YGLIPMK|CE 0.055 . ____________________________^_________________

  • Fasta :-

    >NF0109410 ATGGTTATATTCATGCCATCACTTCCTTTTGTCAGCTGTCAAAAACCTTCAAGAACAAAA AAAATGGCGGAACAGCCTAACGGCACAACGAATCAATCTCACAATAATTTCTACAAAGAT GCCTTCACTGAGCGATACATCGATGAGCTCGACAATACAAGCTTTACATCCTTCGAATTA AAATCTCAACCTTCCATCCAACAACGAAAACCCGTTCAAAACTACTCAGTCGAATATGAC ACCACCAAAGATCCTAATTTAGAGGATCCGATGGACCTCGGAGAAGGAAAATCCAAATAT ACAGCGGACCAAACACAAATTGATGGAGAAAATCAAAAGAAAAAGAAGAATCGAATGACT GATCGAATAATTTCATTTCCATATTGGACTGCTCTGACATGTGTGGCAGAAGTAACAGTG TTTGTTGCCATGTGCATTGTAGGAAAGGGAATTGACGATCCATTGAACAATCCAATGATT GGACCAAAACAAGAAATTGTGATACAATTTGGAGCGAAAGATAATTCTCTCATACGAGCA AATGGAAGTGAATTTTGGAGATTTTTTGTATTCATGTTCATTCACCAAAGTGTTTTAATT TTATTATTTAATCTCATGTGGTTATTGACAACTGTCAGAAAAACAGAAGGAGTTTGGAAA TTTCCAAGAATGGCAGTCATTTACATGCTCTCTGGTATTGGAGGAGGATTGTTGAGTAGT GTTTTCAGTTTTGATCAAATAAGCACTGGTTCCACTTCATGCATTGTTGGAATTATTTCG GCATCTTTGGCAGAATTGATATTGAATTGGGATGTTGTTTTTAATCCTTTCAAATTATTA TTGAGTGTCATTATGCAATTGTTAGTTTTCTTCATTATTGGTTTATTACCAACTGTTGAC CAATTTGCTCATATTGGTGGATTTATTTGTGGATTTCTTTCTGGAGTCATGTTGTGTGCA AGAAAACAAAAGCCAGATTTGGAAAAGAGATGGGCCAAATTCACAATTATTGTGGCGAGA GCGTTTGCTGCTGTTTTATTGGTGATTTACTTTGCCTTATTCTTCCCAATCTTTTATGGA CTGATTCCAATGAAGTGTGAAGCATGTTATTGGTTGGATCCTACTTGGGCCATGTATTTT GGTGACAATGACGAATAA
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  • Fasta :-

    MVIFMPSLPFVSCQKPSRTKKMAEQPNGTTNQSHNNFYKDAFTERYIDELDNTSFTSFEL KSQPSIQQRKPVQNYSVEYDTTKDPNLEDPMDLGEGKSKYTADQTQIDGENQKKKKNRMT DRIISFPYWTALTCVAEVTVFVAMCIVGKGIDDPLNNPMIGPKQEIVIQFGAKDNSLIRA NGSEFWRFFVFMFIHQSVLILLFNLMWLLTTVRKTEGVWKFPRMAVIYMLSGIGGGLLSS VFSFDQISTGSTSCIVGIISASLAELILNWDVVFNPFKLLLSVIMQLLVFFIIGLLPTVD QFAHIGGFICGFLSGVMLCARKQKPDLEKRWAKFTIIVARAFAAVLLVIYFALFFPIFYG LIPMKCEACYWLDPTWAMYFGDNDE

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India