NF0113780 | carboxypeptidase a4

_IDPredictionOTHERSPmTPCS_Position
NF0113780SP0.3882600.6054110.006329CS pos: 28-29. VSG-LL. Pr: 0.8346
No Results

  • Fasta :-

    >NF0113780 MSISLQQRVTAFVIVFLLVIGNVLLVSGLLHIPNSVGSSDVYQHIVKMSTRKFNSDTPSS SFSQHFQSKGFTVIPNSDDQESIFMFLGDEELQQLKTLLSSSTDHCWNQDLKILYSSSSQ KKETHIMTENHETLEDENDIEMTREIILAQFDPSLKKELLKLYSGFNRVPKDYPNLDNIN NYLKGLEQRFPGRAKMMKITKEPTFEKRHIYGVKISNHVEQERDVPNILIVSAHHAREIN TVITSIVIIEKLLSDSNKFGNILQDYQIYIIPVVNVDGYHYVFSTNNWWRKNRRFVGYHN GTKSFGVDLNRNYDIGFEKCAGNDSLNSDVYKGEFAFSEIETSSIRDFAKRVGGFSKVLD FHSLGRQVLTGYTCTWNAQQDYIVKLGEELASKANNYKTRVPHADGEHQEYYIKQYTSYS FLIEIMDSFQPPFSESVKESIELMPLMEHFLNKAIPLRGHVYDRDTGKPLSHVNIQIVGI DWKAGESRHTNHFGSYYLFLPPNMEYELVFSHKVGTMLKTKTVRVRLGQDDASQVLDVHL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0113780.fa Sequence name : NF0113780 Sequence length : 540 VALUES OF COMPUTED PARAMETERS Coef20 : 5.033 CoefTot : -1.926 ChDiff : -7 ZoneTo : 77 KR : 5 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.165 2.824 0.430 0.904 MesoH : -0.048 0.449 -0.308 0.252 MuHd_075 : 30.307 25.620 8.052 6.472 MuHd_095 : 42.541 25.678 12.060 9.142 MuHd_100 : 39.159 22.398 11.307 7.823 MuHd_105 : 33.674 18.402 10.212 5.488 Hmax_075 : 14.467 24.733 4.976 7.677 Hmax_095 : 11.987 12.800 2.216 4.532 Hmax_100 : 10.500 7.800 1.376 3.420 Hmax_105 : 10.200 21.200 1.107 2.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9275 0.0725 DFMC : 0.8624 0.1376
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 540 NF0113780 MSISLQQRVTAFVIVFLLVIGNVLLVSGLLHIPNSVGSSDVYQHIVKMSTRKFNSDTPSSSFSQHFQSKGFTVIPNSDDQ 80 ESIFMFLGDEELQQLKTLLSSSTDHCWNQDLKILYSSSSQKKETHIMTENHETLEDENDIEMTREIILAQFDPSLKKELL 160 KLYSGFNRVPKDYPNLDNINNYLKGLEQRFPGRAKMMKITKEPTFEKRHIYGVKISNHVEQERDVPNILIVSAHHAREIN 240 TVITSIVIIEKLLSDSNKFGNILQDYQIYIIPVVNVDGYHYVFSTNNWWRKNRRFVGYHNGTKSFGVDLNRNYDIGFEKC 320 AGNDSLNSDVYKGEFAFSEIETSSIRDFAKRVGGFSKVLDFHSLGRQVLTGYTCTWNAQQDYIVKLGEELASKANNYKTR 400 VPHADGEHQEYYIKQYTSYSFLIEIMDSFQPPFSESVKESIELMPLMEHFLNKAIPLRGHVYDRDTGKPLSHVNIQIVGI 480 DWKAGESRHTNHFGSYYLFLPPNMEYELVFSHKVGTMLKTKTVRVRLGQDDASQVLDVHL 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0113780 8 SISLQQR|VT 0.100 . NF0113780 47 VYQHIVK|MS 0.063 . NF0113780 51 IVKMSTR|KF 0.089 . NF0113780 52 VKMSTRK|FN 0.115 . NF0113780 69 SQHFQSK|GF 0.088 . NF0113780 96 EELQQLK|TL 0.053 . NF0113780 112 CWNQDLK|IL 0.062 . NF0113780 121 YSSSSQK|KE 0.072 . NF0113780 122 SSSSQKK|ET 0.175 . NF0113780 144 NDIEMTR|EI 0.084 . NF0113780 156 QFDPSLK|KE 0.051 . NF0113780 157 FDPSLKK|EL 0.079 . NF0113780 161 LKKELLK|LY 0.067 . NF0113780 168 LYSGFNR|VP 0.088 . NF0113780 171 GFNRVPK|DY 0.169 . NF0113780 184 NINNYLK|GL 0.077 . NF0113780 189 LKGLEQR|FP 0.131 . NF0113780 193 EQRFPGR|AK 0.102 . NF0113780 195 RFPGRAK|MM 0.059 . NF0113780 198 GRAKMMK|IT 0.075 . NF0113780 201 KMMKITK|EP 0.061 . NF0113780 207 KEPTFEK|RH 0.059 . NF0113780 208 EPTFEKR|HI 0.228 . NF0113780 214 RHIYGVK|IS 0.071 . NF0113780 223 NHVEQER|DV 0.139 . NF0113780 237 VSAHHAR|EI 0.168 . NF0113780 251 SIVIIEK|LL 0.067 . NF0113780 258 LLSDSNK|FG 0.087 . NF0113780 290 STNNWWR|KN 0.101 . NF0113780 291 TNNWWRK|NR 0.100 . NF0113780 293 NWWRKNR|RF 0.251 . NF0113780 294 WWRKNRR|FV 0.410 . NF0113780 303 GYHNGTK|SF 0.084 . NF0113780 311 FGVDLNR|NY 0.084 . NF0113780 319 YDIGFEK|CA 0.070 . NF0113780 332 LNSDVYK|GE 0.081 . NF0113780 346 IETSSIR|DF 0.092 . NF0113780 350 SIRDFAK|RV 0.101 . NF0113780 351 IRDFAKR|VG 0.164 . NF0113780 357 RVGGFSK|VL 0.063 . NF0113780 366 DFHSLGR|QV 0.121 . NF0113780 385 QQDYIVK|LG 0.055 . NF0113780 393 GEELASK|AN 0.059 . NF0113780 398 SKANNYK|TR 0.065 . NF0113780 400 ANNYKTR|VP 0.128 . NF0113780 414 HQEYYIK|QY 0.057 . NF0113780 438 PFSESVK|ES 0.067 . NF0113780 453 MEHFLNK|AI 0.076 . NF0113780 458 NKAIPLR|GH 0.091 . NF0113780 464 RGHVYDR|DT 0.205 . NF0113780 468 YDRDTGK|PL 0.088 . NF0113780 483 IVGIDWK|AG 0.060 . NF0113780 488 WKAGESR|HT 0.110 . NF0113780 513 ELVFSHK|VG 0.060 . NF0113780 519 KVGTMLK|TK 0.055 . NF0113780 521 GTMLKTK|TV 0.080 . NF0113780 524 LKTKTVR|VR 0.075 . NF0113780 526 TKTVRVR|LG 0.090 . ____________________________^_________________

  • Fasta :-

    >NF0113780 ATGTCCATTTCACTGCAGCAGCGTGTGACAGCTTTTGTCATTGTCTTTTTGTTGGTGATT GGTAATGTCTTGTTGGTTTCAGGATTGCTCCACATTCCGAATAGTGTTGGATCTTCCGAT GTGTATCAACACATTGTCAAGATGTCAACAAGAAAATTTAATAGTGACACACCATCATCA TCATTCTCACAACATTTTCAATCAAAAGGTTTTACAGTCATTCCAAATAGTGATGACCAA GAAAGTATTTTCATGTTTTTAGGAGATGAAGAATTACAACAATTGAAAACTCTCTTGTCA TCATCAACCGATCACTGCTGGAATCAAGATTTGAAAATTTTATATTCTTCTTCTTCTCAA AAAAAAGAAACTCATATCATGACAGAGAATCATGAGACTCTCGAAGATGAAAATGATATT GAAATGACAAGAGAAATTATTTTGGCACAATTTGATCCTTCTTTGAAAAAAGAATTATTG AAACTCTATAGTGGATTTAACAGAGTACCAAAAGATTATCCAAACCTTGATAATATTAAT AATTATTTGAAAGGTTTAGAACAGAGATTTCCTGGAAGAGCCAAAATGATGAAAATCACA AAAGAACCAACTTTTGAGAAACGACACATTTATGGTGTGAAAATATCCAATCATGTTGAG CAAGAACGTGATGTTCCTAATATTCTCATTGTGAGCGCTCATCATGCAAGAGAGATTAAC ACTGTCATTACAAGTATTGTCATTATTGAAAAGTTACTTTCTGACTCGAACAAATTTGGA AATATTTTGCAAGATTATCAAATTTATATCATTCCAGTGGTAAATGTGGATGGATATCAT TATGTATTTTCAACAAATAATTGGTGGAGAAAGAATAGAAGATTTGTTGGATATCATAAT GGTACAAAATCATTTGGTGTGGATCTTAATCGAAACTATGATATTGGATTTGAAAAATGT GCTGGAAATGATTCATTGAATTCAGATGTGTATAAAGGAGAATTTGCATTCTCTGAAATT GAGACGAGTAGTATTCGAGACTTTGCTAAACGAGTGGGTGGATTCTCCAAAGTGTTAGAT TTTCATAGTTTAGGAAGACAAGTTCTCACAGGTTATACTTGTACATGGAATGCTCAACAA GATTACATTGTCAAATTAGGAGAGGAATTGGCTTCCAAAGCGAACAATTACAAGACTCGT GTTCCTCATGCTGATGGAGAACATCAAGAATATTACATCAAGCAATATACTTCCTATTCG TTTTTGATTGAAATTATGGACTCTTTCCAACCTCCTTTTTCTGAAAGTGTGAAAGAGTCC ATCGAATTAATGCCTCTCATGGAACACTTTTTAAATAAGGCCATTCCATTAAGAGGACAT GTTTATGATCGTGACACTGGAAAACCACTCAGCCATGTGAATATTCAAATTGTTGGCATT GATTGGAAAGCAGGAGAGAGCAGACACACCAATCATTTTGGAAGTTATTATTTATTCTTA CCTCCAAATATGGAATATGAACTTGTGTTTTCTCACAAGGTGGGAACCATGCTAAAGACC AAGACTGTTCGAGTTCGATTGGGCCAGGACGATGCATCACAAGTGCTGGATGTACATTTA TAA
  • Download Fasta

  • Fasta :-

    MSISLQQRVTAFVIVFLLVIGNVLLVSGLLHIPNSVGSSDVYQHIVKMSTRKFNSDTPSS SFSQHFQSKGFTVIPNSDDQESIFMFLGDEELQQLKTLLSSSTDHCWNQDLKILYSSSSQ KKETHIMTENHETLEDENDIEMTREIILAQFDPSLKKELLKLYSGFNRVPKDYPNLDNIN NYLKGLEQRFPGRAKMMKITKEPTFEKRHIYGVKISNHVEQERDVPNILIVSAHHAREIN TVITSIVIIEKLLSDSNKFGNILQDYQIYIIPVVNVDGYHYVFSTNNWWRKNRRFVGYHN GTKSFGVDLNRNYDIGFEKCAGNDSLNSDVYKGEFAFSEIETSSIRDFAKRVGGFSKVLD FHSLGRQVLTGYTCTWNAQQDYIVKLGEELASKANNYKTRVPHADGEHQEYYIKQYTSYS FLIEIMDSFQPPFSESVKESIELMPLMEHFLNKAIPLRGHVYDRDTGKPLSHVNIQIVGI DWKAGESRHTNHFGSYYLFLPPNMEYELVFSHKVGTMLKTKTVRVRLGQDDASQVLDVHL

  • title: Zn binding site
  • coordinates: H235,E238,H362
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0113780344 SIETSSIRDF0.992unspNF0113780344 SIETSSIRDF0.992unspNF0113780344 SIETSSIRDF0.992unspNF0113780436 SPFSESVKES0.996unspNF0113780101 STLLSSSTDH0.99unspNF0113780338 SEFAFSEIET0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India