NF0115320 | alpha beta hydrolase

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	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0115320	OTHER	0.641640	0.022682	0.335678

No Results

Fasta :-
>NF0115320 MLQLGNSFFFSMSSSFLTKLQHHHHHHHHFLSTSMMTVVAPQKRFYSKKLNPSPPLLPEI TFKTIQPEEHVSSSTSSSTFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXSPEMTFTLMASDLAQFLQKQEISECDLFGFSLGGKTAMTAC LSDEFKQSVAQKVRKLVVGDISPLPLRDSEWDIPHVVQALLLLDEKLPEMKTRSEADAFL QTYIPNVEVRGFLLSNLKRNENEPHIRKGVFDWKFNLKAISSNLHEIADFPYKTQRVFNE MVELGQNYSIRNEPWTSFEKETLFLKGGKSNLINTKSHRTMETIQTFFPNYKLFEFENCG HWIHAEKYSLFVKVMEEFLVNDHSEK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0115320.fa Sequence name : NF0115320 Sequence length : 386 VALUES OF COMPUTED PARAMETERS Coef20 : 4.575 CoefTot : -2.509 ChDiff : -3 ZoneTo : 58 KR : 5 DE : 0 CleavSite : 47 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 0.994 0.134 0.432 MesoH : 0.221 0.199 -0.436 0.138 MuHd_075 : 30.239 18.858 7.892 6.731 MuHd_095 : 19.718 18.616 6.093 6.234 MuHd_100 : 18.629 17.683 5.843 5.596 MuHd_105 : 16.566 18.811 6.073 5.273 Hmax_075 : 14.000 13.400 1.565 3.272 Hmax_095 : -2.975 14.612 0.695 5.898 Hmax_100 : 10.300 12.000 0.219 4.550 Hmax_105 : 5.100 9.100 -2.429 4.433 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1732 0.8268 DFMC : 0.0933 0.9067 This protein is probably imported in chloroplast. f(Ser) = 0.1552 f(Arg) = 0.0172 CMi = 1.64835 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 386 NF0115320 MLQLGNSFFFSMSSSFLTKLQHHHHHHHHFLSTSMMTVVAPQKRFYSKKLNPSPPLLPEITFKTIQPEEHVSSSTSSSTF 80 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEMTFTLMASDLAQFLQKQE 160 ISECDLFGFSLGGKTAMTACLSDEFKQSVAQKVRKLVVGDISPLPLRDSEWDIPHVVQALLLLDEKLPEMKTRSEADAFL 240 QTYIPNVEVRGFLLSNLKRNENEPHIRKGVFDWKFNLKAISSNLHEIADFPYKTQRVFNEMVELGQNYSIRNEPWTSFEK 320 ETLFLKGGKSNLINTKSHRTMETIQTFFPNYKLFEFENCGHWIHAEKYSLFVKVMEEFLVNDHSEK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0115320 19 SSSFLTK|LQ 0.081 . NF0115320 43 TVVAPQK|RF 0.058 . NF0115320 44 VVAPQKR|FY 0.331 . NF0115320 48 QKRFYSK|KL 0.077 . NF0115320 49 KRFYSKK|LN 0.093 . NF0115320 63 LPEITFK|TI 0.089 . NF0115320 158 LAQFLQK|QE 0.063 . NF0115320 174 GFSLGGK|TA 0.067 . NF0115320 186 CLSDEFK|QS 0.073 . NF0115320 192 KQSVAQK|VR 0.068 . NF0115320 194 SVAQKVR|KL 0.099 . NF0115320 195 VAQKVRK|LV 0.109 . NF0115320 207 ISPLPLR|DS 0.110 . NF0115320 226 LLLLDEK|LP 0.057 . NF0115320 231 EKLPEMK|TR 0.060 . NF0115320 233 LPEMKTR|SE 0.224 . NF0115320 250 IPNVEVR|GF 0.097 . NF0115320 258 FLLSNLK|RN 0.055 . NF0115320 259 LLSNLKR|NE 0.137 . NF0115320 267 ENEPHIR|KG 0.067 . NF0115320 268 NEPHIRK|GV 0.110 . NF0115320 274 KGVFDWK|FN 0.069 . NF0115320 278 DWKFNLK|AI 0.077 . NF0115320 293 IADFPYK|TQ 0.062 . NF0115320 296 FPYKTQR|VF 0.092 . NF0115320 311 GQNYSIR|NE 0.088 . NF0115320 320 PWTSFEK|ET 0.053 . NF0115320 326 KETLFLK|GG 0.056 . NF0115320 329 LFLKGGK|SN 0.069 . NF0115320 336 SNLINTK|SH 0.087 . NF0115320 339 INTKSHR|TM 0.120 . NF0115320 352 TFFPNYK|LF 0.065 . NF0115320 367 HWIHAEK|YS 0.066 . NF0115320 373 KYSLFVK|VM 0.066 . NF0115320 386 VNDHSEK|-- 0.065 . ____________________________^_________________

Fasta :-
>NF0115320 ATGCTCCAACTCGGAAATTCCTTCTTCTTTTCCATGTCGTCGTCCTTTCTGACCAAGTTG CAACATCACCATCATCATCACCATCACTTCTTGAGCACATCCATGATGACTGTTGTTGCT CCACAAAAGAGATTCTATTCAAAAAAACTGAATCCTTCTCCTCCTCTTCTTCCTGAAATT ACTTTTAAAACCATTCAACCCGAAGAACACGTGTCGAGTAGTACAAGTAGTAGTACTTTT TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA CCAGAAATGACTTTTACATTGATGGCTTCCGATTTGGCGCAATTCCTTCAAAAACAAGAA ATTTCAGAATGTGATTTATTTGGATTTAGTTTGGGCGGTAAAACAGCCATGACTGCTTGC TTGAGTGATGAATTTAAACAAAGTGTTGCACAAAAAGTGAGAAAATTAGTAGTGGGTGAT ATTAGTCCACTTCCATTGAGAGATTCTGAATGGGATATTCCACATGTGGTTCAAGCTCTT CTTCTTTTAGATGAAAAATTACCAGAAATGAAAACTCGAAGTGAAGCAGATGCATTTCTT CAAACATATATACCCAATGTGGAAGTGAGAGGGTTTTTATTAAGTAATTTAAAGAGAAAT GAAAATGAACCTCACATTCGAAAAGGTGTTTTTGATTGGAAATTTAATTTAAAAGCCATT TCTTCTAATTTACATGAAATTGCTGATTTTCCATACAAGACTCAACGCGTCTTTAATGAA ATGGTTGAATTAGGTCAAAATTATTCGATTCGTAATGAACCATGGACATCATTTGAGAAA GAAACTCTCTTTTTGAAAGGTGGAAAGAGTAATCTCATCAATACAAAGAGTCATCGAACG ATGGAAACTATCCAAACATTCTTTCCAAATTATAAATTATTTGAATTTGAAAATTGTGGA CATTGGATTCATGCAGAGAAGTATTCCTTATTTGTGAAAGTGATGGAAGAATTTTTAGTG AATGATCATTCTGAGAAATAA
Download Fasta

Fasta :-

MLQLGNSFFFSMSSSFLTKLQHHHHHHHHFLSTSMMTVVAPQKRFYSKKLNPSPPLLPEI TFKTIQPEEHVSSSTSSSTFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXSPEMTFTLMASDLAQFLQKQEISECDLFGFSLGGKTAMTAC LSDEFKQSVAQKVRKLVVGDISPLPLRDSEWDIPHVVQALLLLDEKLPEMKTRSEADAFL QTYIPNVEVRGFLLSNLKRNENEPHIRKGVFDWKFNLKAISSNLHEIADFPYKTQRVFNE MVELGQNYSIRNEPWTSFEKETLFLKGGKSNLINTKSHRTMETIQTFFPNYKLFEFENCG HWIHAEKYSLFVKVMEEFLVNDHSEK

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0115320	T	79	0.676	0.029	NF0115320	T	75	0.613	0.031	NF0115320	T	64	0.597	0.077	NF0115320	S	81	0.570	0.053	NF0115320	T	61	0.536	0.078	NF0115320	S	78	0.529	0.016	NF0115320	S	73	0.516	0.042	NF0115320	S	76	0.510	0.033

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0115320	T	79	0.676	0.029	NF0115320	T	75	0.613	0.031	NF0115320	T	64	0.597	0.077	NF0115320	S	81	0.570	0.053	NF0115320	T	61	0.536	0.078	NF0115320	S	78	0.529	0.016	NF0115320	S	73	0.516	0.042	NF0115320	S	76	0.510	0.033

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0115320	140 S	XXXXSPEMT	0.994	unsp	NF0115320	209 S	PLRDSEWDI	0.992	unsp

NF0115320 | alpha beta hydrolase

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Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

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Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India