NF0119540 | ataxin-3 isoform x5

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0004843
Computed_GO_Functions: thiol-dependent ubiquitin-specific protease activity
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0119540	OTHER	0.999804	0.000101	0.000095

No Results

Fasta :-
>NF0119540 MHSLNNLLQGAYFTEIDLMEIARNLDRKEAELLQAESGVQQQTRTSHNVSDEGDFSIGVI STSLEVWGLNLIPITHPSIVQSIREKPWEEKAFICNHLEHWFVFRKFGNHWFNLNSTLKE PTYLSPTHISLFIEQLKQEGYSIYVVKGELPPCEAELYSETFDPKSVTSRSRASSSSSRP QQDNTIDFITKMQESILSGTGARQHQQSTVPMPTPNINSDEWKRAVEFARMESMFWEANR HLTQPQAAAQQTSEDDEDDEDEALKEAIERSLEQQ
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0119540.fa Sequence name : NF0119540 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.454 CoefTot : -0.450 ChDiff : -19 ZoneTo : 14 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.024 1.265 0.047 0.568 MesoH : -0.702 -0.013 -0.555 0.189 MuHd_075 : 12.383 11.977 4.238 3.150 MuHd_095 : 16.671 18.134 7.109 4.132 MuHd_100 : 17.123 18.236 6.778 4.060 MuHd_105 : 16.185 16.867 6.396 3.682 Hmax_075 : 10.733 11.667 0.465 4.200 Hmax_095 : 5.425 12.900 0.279 4.840 Hmax_100 : 12.800 15.400 2.094 4.920 Hmax_105 : 17.400 18.200 2.812 5.610 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9379 0.0621 DFMC : 0.9539 0.0461

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 NF0119540 MHSLNNLLQGAYFTEIDLMEIARNLDRKEAELLQAESGVQQQTRTSHNVSDEGDFSIGVISTSLEVWGLNLIPITHPSIV 80 QSIREKPWEEKAFICNHLEHWFVFRKFGNHWFNLNSTLKEPTYLSPTHISLFIEQLKQEGYSIYVVKGELPPCEAELYSE 160 TFDPKSVTSRSRASSSSSRPQQDNTIDFITKMQESILSGTGARQHQQSTVPMPTPNINSDEWKRAVEFARMESMFWEANR 240 HLTQPQAAAQQTSEDDEDDEDEALKEAIERSLEQQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0119540 23 DLMEIAR|NL 0.114 . NF0119540 27 IARNLDR|KE 0.079 . NF0119540 28 ARNLDRK|EA 0.121 . NF0119540 44 GVQQQTR|TS 0.103 . NF0119540 84 SIVQSIR|EK 0.105 . NF0119540 86 VQSIREK|PW 0.074 . NF0119540 91 EKPWEEK|AF 0.058 . NF0119540 105 EHWFVFR|KF 0.111 . NF0119540 106 HWFVFRK|FG 0.086 . NF0119540 119 NLNSTLK|EP 0.060 . NF0119540 137 LFIEQLK|QE 0.065 . NF0119540 147 YSIYVVK|GE 0.063 . NF0119540 165 SETFDPK|SV 0.086 . NF0119540 170 PKSVTSR|SR 0.132 . NF0119540 172 SVTSRSR|AS 0.084 . NF0119540 179 ASSSSSR|PQ 0.107 . NF0119540 191 TIDFITK|MQ 0.074 . NF0119540 203 LSGTGAR|QH 0.098 . NF0119540 223 INSDEWK|RA 0.081 . NF0119540 224 NSDEWKR|AV 0.319 . NF0119540 230 RAVEFAR|ME 0.103 . NF0119540 240 MFWEANR|HL 0.100 . NF0119540 265 DEDEALK|EA 0.056 . NF0119540 270 LKEAIER|SL 0.187 . ____________________________^_________________

Fasta :-
>NF0119540 ATGCATTCTCTAAATAATCTCCTTCAGGGAGCCTATTTTACAGAAATTGATTTGATGGAA ATTGCACGTAATTTAGATAGGAAGGAAGCTGAATTATTGCAAGCTGAATCCGGGGTGCAA CAGCAAACAAGGACGAGTCATAACGTGAGTGATGAAGGAGATTTTAGTATTGGAGTTATT TCCACAAGTCTTGAAGTTTGGGGACTGAATTTAATTCCGATCACACATCCAAGCATTGTT CAATCCATCAGAGAAAAACCTTGGGAAGAAAAAGCTTTTATTTGCAATCATCTGGAACAT TGGTTTGTCTTTAGAAAATTTGGAAATCATTGGTTTAATCTAAATTCAACATTGAAAGAA CCAACCTATCTTTCACCTACTCATATTTCTCTTTTTATTGAGCAGTTGAAACAAGAAGGA TATTCAATTTATGTTGTTAAGGGAGAATTACCTCCATGTGAGGCTGAGTTATATTCTGAA ACATTTGATCCCAAATCTGTGACAAGTCGCTCACGTGCTTCATCCTCAAGCAGCCGACCT CAACAAGACAATACGATTGATTTTATTACAAAAATGCAAGAAAGTATTTTGTCTGGCACC GGTGCCCGACAACATCAACAATCCACTGTACCAATGCCAACTCCTAACATAAATAGTGAT GAGTGGAAACGAGCTGTTGAATTTGCAAGAATGGAATCAATGTTTTGGGAGGCCAATCGT CACTTGACACAACCCCAAGCAGCAGCACAACAAACATCGGAAGACGACGAGGATGATGAA GATGAGGCGCTAAAGGAAGCAATCGAAAGAAGCTTAGAACAACAATAA
Download Fasta

Fasta :-

MHSLNNLLQGAYFTEIDLMEIARNLDRKEAELLQAESGVQQQTRTSHNVSDEGDFSIGVI STSLEVWGLNLIPITHPSIVQSIREKPWEEKAFICNHLEHWFVFRKFGNHWFNLNSTLKE PTYLSPTHISLFIEQLKQEGYSIYVVKGELPPCEAELYSETFDPKSVTSRSRASSSSSRP QQDNTIDFITKMQESILSGTGARQHQQSTVPMPTPNINSDEWKRAVEFARMESMFWEANR HLTQPQAAAQQTSEDDEDDEDEALKEAIERSLEQQ

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0119540	T	168	0.563	0.153	NF0119540	T	161	0.557	0.040	NF0119540	S	166	0.536	0.020

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0119540	T	168	0.563	0.153	NF0119540	T	161	0.557	0.040	NF0119540	S	166	0.536	0.020

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0119540	174 S	RSRASSSSS	0.997	unsp	NF0119540	174 S	RSRASSSSS	0.997	unsp	NF0119540	174 S	RSRASSSSS	0.997	unsp	NF0119540	175 S	SRASSSSSR	0.995	unsp	NF0119540	253 S	AQQTSEDDE	0.994	unsp	NF0119540	50 S	SHNVSDEGD	0.995	unsp	NF0119540	169 S	KSVTSRSRA	0.991	unsp

NF0119540 | ataxin-3 isoform x5

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0004843

Computed_GO_Functions: thiol-dependent ubiquitin-specific protease activity

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India