NF0130780 | rhomboid-like protein isoform 1

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0130780OTHER0.7395210.0003290.260150
No Results

  • Fasta :-

    >NF0130780 MIRRLRLCDHQKARTLLSSLPSKSKSTTHSSIIFNQKPYIFQSMEHNPFIVGTSRLFSAL RSNCITQFNHWSRSDAPINDPHHHHHSSIITNSKNHGSQSPIQTFHHSHSLERTIMDHSR QRNYNTSCKLQESSGDPAQDFFDEMRRMYIHEEMVQNFYEFESQRGKSAHGRRLLWTFLA FPAVFALLVACTVGFDKMFHEEVQGNIQVLVQQALSQYIQSVEQQKKASKAKESKVPTPL LTKGPIINEPNDNAFNEIEKDVKRYPFLYAIIAANVAAHFVVKQLRWSAPFAQFYTRHMT CSVNNILRGRIHTLVTCTFIHGGLAHLGFNMYALYSMGHLLYEVLSPEAFLGFYLGAGAC ASVGSILLKLITKNYYQGSVGASGAVFAIMFAGLNIISLEKAKLNLIFLPDSLGGFDPKY FLPAYFIGEILFNVFSRRVKLDTGAHLTGAVFGYSALSALRKQEYHQQRRCTELSSRKTY YFGQVREMRKDGLGLLISPQWAVIANFKDGSAIGQGIVFQKGQDGQWRGAGVMLDQVKAK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0130780.fa Sequence name : NF0130780 Sequence length : 540 VALUES OF COMPUTED PARAMETERS Coef20 : 4.946 CoefTot : -0.664 ChDiff : 20 ZoneTo : 74 KR : 11 DE : 2 CleavSite : 75 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.329 2.341 0.460 0.862 MesoH : 0.839 0.999 -0.010 0.488 MuHd_075 : 24.231 19.320 7.452 5.898 MuHd_095 : 23.733 20.844 7.789 7.289 MuHd_100 : 24.126 18.168 6.566 6.728 MuHd_105 : 26.341 18.011 6.191 6.628 Hmax_075 : 6.183 10.700 0.716 2.940 Hmax_095 : 11.725 15.700 2.009 2.620 Hmax_100 : -3.900 11.000 2.009 2.460 Hmax_105 : 14.300 10.033 -1.062 5.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1610 0.8390 DFMC : 0.2023 0.7977 This protein is probably imported in mitochondria. f(Ser) = 0.1757 f(Arg) = 0.0946 CMi = 0.86782 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 540 NF0130780 MIRRLRLCDHQKARTLLSSLPSKSKSTTHSSIIFNQKPYIFQSMEHNPFIVGTSRLFSALRSNCITQFNHWSRSDAPIND 80 PHHHHHSSIITNSKNHGSQSPIQTFHHSHSLERTIMDHSRQRNYNTSCKLQESSGDPAQDFFDEMRRMYIHEEMVQNFYE 160 FESQRGKSAHGRRLLWTFLAFPAVFALLVACTVGFDKMFHEEVQGNIQVLVQQALSQYIQSVEQQKKASKAKESKVPTPL 240 LTKGPIINEPNDNAFNEIEKDVKRYPFLYAIIAANVAAHFVVKQLRWSAPFAQFYTRHMTCSVNNILRGRIHTLVTCTFI 320 HGGLAHLGFNMYALYSMGHLLYEVLSPEAFLGFYLGAGACASVGSILLKLITKNYYQGSVGASGAVFAIMFAGLNIISLE 400 KAKLNLIFLPDSLGGFDPKYFLPAYFIGEILFNVFSRRVKLDTGAHLTGAVFGYSALSALRKQEYHQQRRCTELSSRKTY 480 YFGQVREMRKDGLGLLISPQWAVIANFKDGSAIGQGIVFQKGQDGQWRGAGVMLDQVKAK 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0130780 3 ----MIR|RL 0.081 . NF0130780 4 ---MIRR|LR 0.075 . NF0130780 6 -MIRRLR|LC 0.227 . NF0130780 12 RLCDHQK|AR 0.058 . NF0130780 14 CDHQKAR|TL 0.133 . NF0130780 23 LSSLPSK|SK 0.104 . NF0130780 25 SLPSKSK|ST 0.081 . NF0130780 37 SIIFNQK|PY 0.064 . NF0130780 55 FIVGTSR|LF 0.082 . NF0130780 61 RLFSALR|SN 0.118 . NF0130780 73 QFNHWSR|SD 0.167 . NF0130780 94 SIITNSK|NH 0.064 . NF0130780 113 HSHSLER|TI 0.108 . NF0130780 120 TIMDHSR|QR 0.095 . NF0130780 122 MDHSRQR|NY 0.093 . NF0130780 129 NYNTSCK|LQ 0.066 . NF0130780 146 DFFDEMR|RM 0.088 . NF0130780 147 FFDEMRR|MY 0.129 . NF0130780 165 YEFESQR|GK 0.111 . NF0130780 167 FESQRGK|SA 0.104 . NF0130780 172 GKSAHGR|RL 0.126 . NF0130780 173 KSAHGRR|LL 0.176 . NF0130780 197 CTVGFDK|MF 0.065 . NF0130780 226 QSVEQQK|KA 0.082 . NF0130780 227 SVEQQKK|AS 0.127 . NF0130780 230 QQKKASK|AK 0.073 . NF0130780 232 KKASKAK|ES 0.073 . NF0130780 235 SKAKESK|VP 0.067 . NF0130780 243 PTPLLTK|GP 0.057 . NF0130780 260 AFNEIEK|DV 0.079 . NF0130780 263 EIEKDVK|RY 0.053 . NF0130780 264 IEKDVKR|YP 0.135 . NF0130780 283 AAHFVVK|QL 0.074 . NF0130780 286 FVVKQLR|WS 0.079 . NF0130780 297 FAQFYTR|HM 0.095 . NF0130780 308 SVNNILR|GR 0.100 . NF0130780 310 NNILRGR|IH 0.085 . NF0130780 369 VGSILLK|LI 0.071 . NF0130780 373 LLKLITK|NY 0.063 . NF0130780 401 NIISLEK|AK 0.053 . NF0130780 403 ISLEKAK|LN 0.065 . NF0130780 419 LGGFDPK|YF 0.070 . NF0130780 437 LFNVFSR|RV 0.112 . NF0130780 438 FNVFSRR|VK 0.130 . NF0130780 440 VFSRRVK|LD 0.121 . NF0130780 461 SALSALR|KQ 0.072 . NF0130780 462 ALSALRK|QE 0.104 . NF0130780 469 QEYHQQR|RC 0.080 . NF0130780 470 EYHQQRR|CT 0.147 . NF0130780 477 CTELSSR|KT 0.076 . NF0130780 478 TELSSRK|TY 0.076 . NF0130780 486 YYFGQVR|EM 0.076 . NF0130780 489 GQVREMR|KD 0.277 . NF0130780 490 QVREMRK|DG 0.082 . NF0130780 508 AVIANFK|DG 0.086 . NF0130780 521 QGIVFQK|GQ 0.079 . NF0130780 528 GQDGQWR|GA 0.200 . NF0130780 538 VMLDQVK|AK 0.062 . NF0130780 540 LDQVKAK|-- 0.088 . ____________________________^_________________

  • Fasta :-

    >NF0130780 ATGATTCGAAGACTTCGTCTCTGTGACCATCAAAAGGCGAGGACTCTTCTTTCTTCGCTG CCATCAAAATCAAAATCTACCACTCATTCAAGCATCATTTTCAATCAGAAACCATACATT TTCCAATCAATGGAGCACAACCCATTCATTGTTGGAACTAGTAGGCTCTTCTCAGCATTA AGATCGAACTGCATCACTCAGTTTAATCATTGGTCTCGTTCGGACGCTCCGATCAATGAT CCTCACCATCATCATCATTCAAGTATTATTACTAATAGTAAGAATCATGGCTCTCAGTCT CCCATTCAAACATTCCATCATTCTCACTCTCTTGAAAGAACCATCATGGACCACTCTCGA CAGAGAAATTACAATACTTCTTGCAAGCTCCAAGAGTCCTCAGGAGATCCTGCTCAAGAC TTTTTTGATGAAATGAGAAGAATGTACATTCATGAAGAGATGGTTCAAAATTTCTATGAA TTTGAATCACAGAGAGGAAAAAGTGCACATGGTAGACGACTGTTGTGGACGTTTTTGGCA TTTCCAGCTGTATTTGCCTTACTAGTTGCTTGTACCGTTGGGTTTGACAAGATGTTTCAT GAAGAAGTACAAGGAAATATTCAAGTACTTGTTCAACAAGCATTATCTCAGTATATTCAG TCGGTAGAACAACAAAAGAAAGCATCAAAAGCAAAGGAATCCAAAGTACCAACTCCCCTA CTCACGAAAGGACCAATTATAAATGAACCCAATGACAATGCTTTTAACGAAATTGAGAAG GACGTGAAACGATATCCATTCTTGTATGCGATTATTGCAGCGAATGTTGCAGCTCACTTT GTTGTGAAACAACTTAGATGGAGTGCACCATTTGCTCAATTTTACACACGACACATGACA TGCTCGGTGAATAATATTTTGAGAGGAAGAATTCACACACTTGTGACATGTACTTTTATT CACGGTGGGCTTGCGCATCTTGGTTTTAACATGTACGCCCTTTACAGTATGGGACATTTA TTGTATGAAGTCTTGTCACCTGAGGCGTTCTTAGGCTTTTATTTGGGAGCAGGTGCTTGT GCGAGTGTGGGCAGTATTTTACTCAAATTGATAACGAAAAATTATTATCAAGGCAGTGTT GGTGCTTCAGGTGCAGTTTTTGCAATCATGTTTGCAGGATTGAATATTATTTCACTAGAG AAGGCAAAACTAAACTTAATTTTCTTGCCTGACAGTTTGGGAGGCTTTGATCCAAAATAT TTCTTGCCTGCTTATTTCATCGGTGAAATTTTGTTCAATGTCTTTTCGAGACGTGTAAAA TTAGATACAGGAGCACACTTGACTGGAGCTGTATTCGGTTATTCTGCGCTGTCAGCTCTT CGAAAGCAAGAGTATCATCAACAGAGACGATGCACCGAATTAAGCTCTAGAAAAACCTAC TATTTTGGTCAAGTAAGGGAAATGAGGAAGGATGGCTTGGGATTGCTCATCTCTCCTCAA TGGGCTGTCATTGCCAACTTTAAGGATGGCTCTGCAATTGGACAAGGTATAGTTTTTCAA AAAGGACAGGATGGTCAATGGAGAGGAGCAGGAGTCATGTTGGACCAAGTTAAGGCAAAA TAG
  • Download Fasta

  • Fasta :-

    MIRRLRLCDHQKARTLLSSLPSKSKSTTHSSIIFNQKPYIFQSMEHNPFIVGTSRLFSAL RSNCITQFNHWSRSDAPINDPHHHHHSSIITNSKNHGSQSPIQTFHHSHSLERTIMDHSR QRNYNTSCKLQESSGDPAQDFFDEMRRMYIHEEMVQNFYEFESQRGKSAHGRRLLWTFLA FPAVFALLVACTVGFDKMFHEEVQGNIQVLVQQALSQYIQSVEQQKKASKAKESKVPTPL LTKGPIINEPNDNAFNEIEKDVKRYPFLYAIIAANVAAHFVVKQLRWSAPFAQFYTRHMT CSVNNILRGRIHTLVTCTFIHGGLAHLGFNMYALYSMGHLLYEVLSPEAFLGFYLGAGAC ASVGSILLKLITKNYYQGSVGASGAVFAIMFAGLNIISLEKAKLNLIFLPDSLGGFDPKY FLPAYFIGEILFNVFSRRVKLDTGAHLTGAVFGYSALSALRKQEYHQQRRCTELSSRKTY YFGQVREMRKDGLGLLISPQWAVIANFKDGSAIGQGIVFQKGQDGQWRGAGVMLDQVKAK

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0130780110 SHHSHSLERT0.996unspNF0130780168 SQRGKSAHGR0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India