PBANKA_0100300 | lysophospholipase, putative, pseudogene

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0100300OTHER0.9999830.0000080.000009
No Results

  • Fasta :-

    >PBANKA_0100300 MEEIELNNPELRNTKYFTMGDPKTGCFCNKNGLLLKTYGWLIKNDIEIILLCMGSNIMLL TFMRINLKCQITMRT***TIIITIFIKIVGLKKFNKMVIQYMHYICKDIGNHKHGKFKRK FNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKKKLPMYIIGHSMEEILL*DYY NY*GKQKKT*LRNNSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTIA SDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALIP SKFRYNISKYVASIYKHDNFRNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHST DDSVCSYKGAV*FYNKANVNEKKLHLVDDMNHDITMGPGNENILKKIIE*ISNLRRDDED EINGEIEDEKENET
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0100300.fa Sequence name : PBANKA_0100300 Sequence length : 434 VALUES OF COMPUTED PARAMETERS Coef20 : 3.236 CoefTot : 0.000 ChDiff : -1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.541 1.965 0.259 0.676 MesoH : -0.037 0.846 -0.205 0.311 MuHd_075 : 11.617 8.149 3.181 2.286 MuHd_095 : 4.559 1.969 0.358 1.878 MuHd_100 : 15.275 8.777 3.526 3.005 MuHd_105 : 26.696 14.543 6.051 5.005 Hmax_075 : -5.017 -0.438 -4.226 0.370 Hmax_095 : -10.675 -3.000 -5.634 0.927 Hmax_100 : -7.900 -1.400 -5.325 0.420 Hmax_105 : 10.600 8.100 0.003 3.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9893 0.0107 DFMC : 0.9884 0.0116
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 434 PBANKA_0100300 MEEIELNNPELRNTKYFTMGDPKTGCFCNKNGLLLKTYGWLIKNDIEIILLCMGSNIMLLTFMRINLKCQITMRTXXXTI 80 IITIFIKIVGLKKFNKMVIQYMHYICKDIGNHKHGKFKRKFNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKK 160 KLPMYIIGHSMEEILLXDYYNYXGKQKKTXLRNNSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTIA 240 SDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALIPSKFRYNISKYVASIYKHDNF 320 RNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHSTDDSVCSYKGAVXFYNKANVNEKKLHLVDDMNHDITMGPGN 400 ENILKKIIEXISNLRRDDEDEINGEIEDEKENET 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0100300 12 LNNPELR|NT 0.092 . PBANKA_0100300 15 PELRNTK|YF 0.114 . PBANKA_0100300 23 FTMGDPK|TG 0.057 . PBANKA_0100300 30 TGCFCNK|NG 0.059 . PBANKA_0100300 36 KNGLLLK|TY 0.066 . PBANKA_0100300 43 TYGWLIK|ND 0.062 . PBANKA_0100300 64 MLLTFMR|IN 0.089 . PBANKA_0100300 68 FMRINLK|CQ 0.061 . PBANKA_0100300 74 KCQITMR|TX 0.096 . PBANKA_0100300 87 IITIFIK|IV 0.075 . PBANKA_0100300 92 IKIVGLK|KF 0.065 . PBANKA_0100300 93 KIVGLKK|FN 0.100 . PBANKA_0100300 96 GLKKFNK|MV 0.108 . PBANKA_0100300 107 YMHYICK|DI 0.099 . PBANKA_0100300 113 KDIGNHK|HG 0.058 . PBANKA_0100300 116 GNHKHGK|FK 0.084 . PBANKA_0100300 118 HKHGKFK|RK 0.080 . PBANKA_0100300 119 KHGKFKR|KF 0.195 . PBANKA_0100300 120 HGKFKRK|FN 0.106 . PBANKA_0100300 159 HNIVTTK|KK 0.065 . PBANKA_0100300 160 NIVTTKK|KL 0.090 . PBANKA_0100300 161 IVTTKKK|LP 0.114 . PBANKA_0100300 185 YYNYXGK|QK 0.072 . PBANKA_0100300 187 NYXGKQK|KT 0.062 . PBANKA_0100300 188 YXGKQKK|TX 0.093 . PBANKA_0100300 192 QKKTXLR|NN 0.095 . PBANKA_0100300 199 NNSNNYK|NC 0.077 . PBANKA_0100300 243 NTIASDK|DE 0.068 . PBANKA_0100300 253 FYNYLYK|LN 0.065 . PBANKA_0100300 257 LYKLNIK|DC 0.068 . PBANKA_0100300 267 TLFGMMR|IK 0.085 . PBANKA_0100300 269 FGMMRIK|TI 0.062 . PBANKA_0100300 276 TILNDGK|NS 0.064 . PBANKA_0100300 280 DGKNSFK|HF 0.061 . PBANKA_0100300 292 IVNFMSR|IA 0.112 . PBANKA_0100300 302 HALIPSK|FR 0.061 . PBANKA_0100300 304 LIPSKFR|YN 0.096 . PBANKA_0100300 309 FRYNISK|YV 0.100 . PBANKA_0100300 316 YVASIYK|HD 0.058 . PBANKA_0100300 321 YKHDNFR|NN 0.091 . PBANKA_0100300 327 RNNNGIK|FK 0.082 . PBANKA_0100300 329 NNGIKFK|CM 0.071 . PBANKA_0100300 336 CMAELIK|AT 0.072 . PBANKA_0100300 368 DSVCSYK|GA 0.070 . PBANKA_0100300 376 AVXFYNK|AN 0.058 . PBANKA_0100300 382 KANVNEK|KL 0.072 . PBANKA_0100300 383 ANVNEKK|LH 0.084 . PBANKA_0100300 405 GNENILK|KI 0.069 . PBANKA_0100300 406 NENILKK|II 0.144 . PBANKA_0100300 415 EXISNLR|RD 0.072 . PBANKA_0100300 416 XISNLRR|DD 0.307 . PBANKA_0100300 430 GEIEDEK|EN 0.068 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0100300 ATGGAAGAAATTGAATTGAATAATCCTGAATTAAGAAATACAAAATATTTTACGATGGGT GATCCTAAGACAGGTTGTTTCTGTAATAAAAATGGTTTACTTTTAAAAACATATGGGTGG CTGATTAAAAATGATATAGAAATTATATTGTTATGCATGGGTTCAAATATCATGCTCTTA ACTTTTATGAGAATAAATTTAAAATGCCAAATAACAATGAGGACTTAGTAGTAGACAATA ATAATTACTATATTTATAAAGATAGTTGGATTGAAAAAATTTAATAAAATGGTTATTCAG TATATGCACTATATTTGCAAGGACATTGGGAATCACAAGCATGGAAAATTTAAGAGGAAG TTCAATAGTTTTGATGATTTAGTTGATGATGTAATACAATATATGAACCAAATTCAAGAT GAAATCTCAAATGATAATCAAACAGATGATGAATCTCATAATATAGTAACAACTAAAAAA AAACTTCCTATGTATATTATTGGGCATTCGATGGAGGAAATATTGCTTTAAGACTATTAC AATTATTAAGGAAAGCAAAAGAAGACATAATTAAGGAATAATTCAAATAACTATAAAAAT TGTAACACCATGCTAGAAAATTTTACTAATGTTAATGAAGTTGCAATGATGAATAATTCT AATGATTATAATTCCGATAATTCATGTGCTAGTACCTCTGCTACGACAAATACTATTGCT AGTGATAAAGATGAAGGATTCTATAATTATTTATATAAATTAAATATTAAAGATTGCGCA ACATTATTTGGAATGATGAGAATAAAAACAATATTGAATGATGGAAAAAATTCATTTAAA CATTTTTATTTACCTATAGTAAACTTCATGTCTCGTATAGCGACCCATGCACTAATTCCG TCAAAATTTCGTTATAATATATCCAAGTATGTTGCTAGTATATATAAACACGATAATTTT CGAAATAATAATGGAATCAAATTTAAATGTATGGCTGAACTTATAAAGGCAACGATCCAA TTGGAGTGTAATATTAATTACATTCCAAATGATATTCCTTTATTATTTGTGCATTCAACA GATGATAGTGTTTGTTCTTATAAAGGGGCAGTTTAGTTTTATAATAAAGCAAATGTTAAT GAAAAAAAATTACACCTTGTTGATGATATGAATCATGATATAACGATGGGGCCAGGAAAT GAAAACATTTTAAAAAAAATTATTGAATGAATTTCTAATTTAAGAAGGGATGATGAAGAT GAAATAAATGGTGAAATAGAAGATGAAAAAGAAAATGAAACATAA
  • Download Fasta

  • Fasta :-

    MEEIELNNPELRNTKYFTMGDPKTGCFCNKNGLLLKTYGWLIKNDIEIILLCMGSNIMLL TFMRINLKCQITMRT***TIIITIFIKIVGLKKFNKMVIQYMHYICKDIGNHKHGKFKRK FNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKKKLPMYIIGHSMEEILL*DYY NY*GKQKKT*LRNNSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTIA SDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALIP SKFRYNISKYVASIYKHDNFRNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHST DDSVCSYKGAV*FYNKANVNEKKLHLVDDMNHDITMGPGNENILKKIIE*ISNLRRDDED EINGEIEDEKENET

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0100300170 SIIGHSMEEI0.991unspPBANKA_0100300241 SNTIASDKDE0.997unsp

PBANKA_010030      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India