PBANKA_0417000 | signal peptidase complex subunit 3, putative

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  • Fasta :-

    >PBANKA_0417000 MDSLLNRINVIFYSMALCFVTLCLFNYGTSFYLFDENSIVTDVKVKSVKRLVYNKYINGD EAVLSLDLSYDMTKAFNWNLKQLFVYVLVTYKTPEKAENEVIIQDYIINNKKSAKKTYKN FITKYSLKDYYNGLRNNLINIQVCYKYMPLIGLSRTYHGAKTSYMMPDEYFDAMPAKYPL YYPDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0417000.fa Sequence name : PBANKA_0417000 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.680 CoefTot : -0.017 ChDiff : 6 ZoneTo : 34 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.165 0.444 0.694 MesoH : -0.623 0.462 -0.369 0.226 MuHd_075 : 21.577 10.409 5.253 3.326 MuHd_095 : 25.042 18.469 5.959 6.163 MuHd_100 : 25.332 20.441 7.633 6.035 MuHd_105 : 23.727 21.590 8.005 5.227 Hmax_075 : 14.300 18.783 5.362 5.437 Hmax_095 : 21.400 22.100 3.822 7.578 Hmax_100 : 22.600 24.100 5.361 8.040 Hmax_105 : 5.338 13.500 1.876 3.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9145 0.0855 DFMC : 0.8656 0.1344
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 PBANKA_0417000 MDSLLNRINVIFYSMALCFVTLCLFNYGTSFYLFDENSIVTDVKVKSVKRLVYNKYINGDEAVLSLDLSYDMTKAFNWNL 80 KQLFVYVLVTYKTPEKAENEVIIQDYIINNKKSAKKTYKNFITKYSLKDYYNGLRNNLINIQVCYKYMPLIGLSRTYHGA 160 KTSYMMPDEYFDAMPAKYPLYYPDK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0417000 7 MDSLLNR|IN 0.087 . PBANKA_0417000 44 SIVTDVK|VK 0.063 . PBANKA_0417000 46 VTDVKVK|SV 0.089 . PBANKA_0417000 49 VKVKSVK|RL 0.058 . PBANKA_0417000 50 KVKSVKR|LV 0.207 . PBANKA_0417000 55 KRLVYNK|YI 0.077 . PBANKA_0417000 74 LSYDMTK|AF 0.072 . PBANKA_0417000 81 AFNWNLK|QL 0.070 . PBANKA_0417000 92 YVLVTYK|TP 0.063 . PBANKA_0417000 96 TYKTPEK|AE 0.064 . PBANKA_0417000 111 DYIINNK|KS 0.053 . PBANKA_0417000 112 YIINNKK|SA 0.160 . PBANKA_0417000 115 NNKKSAK|KT 0.086 . PBANKA_0417000 116 NKKSAKK|TY 0.088 . PBANKA_0417000 119 SAKKTYK|NF 0.070 . PBANKA_0417000 124 YKNFITK|YS 0.066 . PBANKA_0417000 128 ITKYSLK|DY 0.081 . PBANKA_0417000 135 DYYNGLR|NN 0.068 . PBANKA_0417000 146 NIQVCYK|YM 0.062 . PBANKA_0417000 155 PLIGLSR|TY 0.083 . PBANKA_0417000 161 RTYHGAK|TS 0.065 . PBANKA_0417000 177 FDAMPAK|YP 0.069 . PBANKA_0417000 185 PLYYPDK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0417000 ATGGATAGCCTTTTAAATAGAATAAATGTAATTTTTTATTCGATGGCATTATGCTTTGTT ACCCTGTGTCTTTTTAATTATGGAACATCATTTTATTTATTTGATGAAAATAGTATAGTA ACTGATGTAAAAGTGAAAAGTGTAAAAAGATTAGTTTATAATAAATATATAAACGGTGAT GAAGCAGTATTATCTTTAGATTTATCATATGATATGACAAAAGCCTTTAATTGGAATTTA AAACAGTTATTTGTATATGTATTAGTAACATATAAAACTCCTGAAAAAGCCGAAAATGAA GTTATCATACAAGACTATATTATAAATAACAAAAAAAGTGCAAAAAAAACGTATAAAAAT TTCATTACAAAATATTCCCTTAAAGATTATTATAATGGATTAAGAAATAATTTAATAAAT ATACAAGTATGTTATAAATATATGCCATTAATCGGATTATCACGAACTTATCACGGGGCA AAAACGTCATATATGATGCCTGATGAATATTTTGATGCGATGCCAGCTAAATATCCATTA TATTATCCTGACAAATAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0417000126 SITKYSLKDY0.993unspPBANKA_0417000126 SITKYSLKDY0.993unspPBANKA_0417000126 SITKYSLKDY0.993unspPBANKA_041700047 SVKVKSVKRL0.997unspPBANKA_0417000113 SNNKKSAKKT0.994unsp

PBANKA_041700      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India