PBANKA_0504100 | autophagy-related protein 8

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020011      GO:0031410      GO:0005829      

  • Curated_GO_Components:  apicoplast      cytoplasmic vesicle      cytosol      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_0504100OTHER0.9979570.0003530.001690
No Results

  • Fasta :-

    >PBANKA_0504100 MPSLKEEIPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFK FVLHQHINQSAYGNNMKLFREKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0504100.fa Sequence name : PBANKA_0504100 Sequence length : 124 VALUES OF COMPUTED PARAMETERS Coef20 : 3.440 CoefTot : -0.132 ChDiff : 1 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.676 1.182 -0.103 0.509 MesoH : -1.123 -0.063 -0.629 0.136 MuHd_075 : 19.497 15.432 5.647 3.355 MuHd_095 : 11.904 11.433 3.862 3.881 MuHd_100 : 18.089 15.330 4.055 5.058 MuHd_105 : 20.726 17.172 4.110 5.431 Hmax_075 : 2.683 8.283 -1.644 3.080 Hmax_095 : -4.900 4.200 -3.006 2.100 Hmax_100 : 0.300 4.500 -2.753 2.440 Hmax_105 : 3.150 6.767 -1.019 2.835 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9174 0.0826 DFMC : 0.9315 0.0685
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 124 PBANKA_0504100 MPSLKEEIPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFKFVLHQHINQSAYGNNMKLFR 80 EKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCESCFG 160 ................................................................................ 80 ............................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0504100 5 --MPSLK|EE 0.061 . PBANKA_0504100 13 EIPFESR|VA 0.080 . PBANKA_0504100 19 RVAETHK|IR 0.062 . PBANKA_0504100 21 AETHKIR|AK 0.092 . PBANKA_0504100 23 THKIRAK|YP 0.074 . PBANKA_0504100 27 RAKYPNR|IP 0.084 . PBANKA_0504100 34 IPVVCEK|AH 0.068 . PBANKA_0504100 37 VCEKAHR|SN 0.102 . PBANKA_0504100 45 NLPEIEK|KK 0.057 . PBANKA_0504100 46 LPEIEKK|KF 0.093 . PBANKA_0504100 47 PEIEKKK|FL 0.117 . PBANKA_0504100 60 MLVGEFK|FV 0.082 . PBANKA_0504100 77 AYGNNMK|LF 0.060 . PBANKA_0504100 80 NNMKLFR|EK 0.102 . PBANKA_0504100 82 MKLFREK|TI 0.066 . PBANKA_0504100 94 VNNIIPK|TG 0.059 . PBANKA_0504100 107 ELYEMYK|DE 0.069 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0504100 ATGCCATCATTAAAAGAAGAAATCCCCTTTGAAAGTAGAGTTGCAGAAACTCATAAAATT CGAGCAAAATATCCAAATAGAATTCCAGTGGTGTGTGAAAAAGCGCATAGATCAAATTTA CCCGAAATTGAAAAAAAAAAATTTCTTGTCCCTATGAATATGTTAGTGGGTGAATTTAAA TTTGTTTTGCATCAACATATAAATCAAAGTGCATATGGAAACAATATGAAATTATTTAGA GAAAAAACTATATATTTATTTGTCAATAATATTATTCCAAAAACAGGATTATTAATGCAA GAATTATATGAAATGTATAAAGATGAGGATGGATATTTGTATCTTGAGTACAGTTGTGAA AGTTGTTTTGGATAA
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  • Fasta :-

    MPSLKEEIPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFK FVLHQHINQSAYGNNMKLFREKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG

    No Results
  • title: Atg7 interaction site
  • coordinates: R27,K45,F48,G57,E58,K60,F61,V62,H64,Q65,H66,E81,T83,I84,Y85,F87,N90,I91,K94,T95,G96
No Results
No Results
No Results

PBANKA_050410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India