PBANKA_0612000 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0612000SP0.0188480.9806470.000505CS pos: 17-18. CVC-KK. Pr: 0.9104
No Results

  • Fasta :-

    >PBANKA_0612000 MRLFWIFIINFIYFCVCKKKKYITPSNFIIAQTNNIRLKNKLRYYNNEYSKQNISIPSLL LSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDV ISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQA TNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0612000.fa Sequence name : PBANKA_0612000 Sequence length : 240 VALUES OF COMPUTED PARAMETERS Coef20 : 4.713 CoefTot : -2.281 ChDiff : 10 ZoneTo : 77 KR : 12 DE : 1 CleavSite : 74 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.994 0.276 0.683 MesoH : -0.395 0.396 -0.248 0.234 MuHd_075 : 31.481 20.364 9.072 6.790 MuHd_095 : 27.946 20.922 7.830 6.213 MuHd_100 : 24.048 20.261 6.744 5.168 MuHd_105 : 25.931 15.732 8.228 6.076 Hmax_075 : 8.500 13.883 1.207 3.760 Hmax_095 : 22.100 19.100 1.757 7.950 Hmax_100 : -9.500 20.800 3.921 5.490 Hmax_105 : -10.267 15.200 3.296 1.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0636 0.9364 DFMC : 0.2731 0.7269 This protein is probably imported in mitochondria. f(Ser) = 0.1039 f(Arg) = 0.0519 CMi = 0.72793 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 240 PBANKA_0612000 MRLFWIFIINFIYFCVCKKKKYITPSNFIIAQTNNIRLKNKLRYYNNEYSKQNISIPSLLLSKRIIFLSSPIYPHISEQI 80 ISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFS 160 LKNSSFCLKQSYSIIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ 240 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0612000 2 -----MR|LF 0.086 . PBANKA_0612000 18 IYFCVCK|KK 0.062 . PBANKA_0612000 19 YFCVCKK|KK 0.079 . PBANKA_0612000 20 FCVCKKK|KY 0.091 . PBANKA_0612000 21 CVCKKKK|YI 0.160 . PBANKA_0612000 37 AQTNNIR|LK 0.070 . PBANKA_0612000 39 TNNIRLK|NK 0.068 . PBANKA_0612000 41 NIRLKNK|LR 0.064 . PBANKA_0612000 43 RLKNKLR|YY 0.100 . PBANKA_0612000 51 YNNEYSK|QN 0.066 . PBANKA_0612000 63 PSLLLSK|RI 0.051 . PBANKA_0612000 64 SLLLSKR|II 0.147 . PBANKA_0612000 92 YLEYESK|RK 0.057 . PBANKA_0612000 93 LEYESKR|KP 0.119 . PBANKA_0612000 94 EYESKRK|PI 0.085 . PBANKA_0612000 110 GDLENNK|IV 0.065 . PBANKA_0612000 141 YTYCLGK|AY 0.063 . PBANKA_0612000 154 ILASSGK|KG 0.058 . PBANKA_0612000 155 LASSGKK|GY 0.116 . PBANKA_0612000 158 SGKKGYR|FS 0.085 . PBANKA_0612000 162 GYRFSLK|NS 0.084 . PBANKA_0612000 169 NSSFCLK|QS 0.076 . PBANKA_0612000 188 NIEIQNK|EI 0.063 . PBANKA_0612000 194 KEIMNTK|KK 0.058 . PBANKA_0612000 195 EIMNTKK|KV 0.163 . PBANKA_0612000 196 IMNTKKK|VI 0.152 . PBANKA_0612000 203 VIDIIAK|NT 0.066 . PBANKA_0612000 207 IAKNTEK|DN 0.068 . PBANKA_0612000 218 ISEILDR|DR 0.083 . PBANKA_0612000 220 EILDRDR|YF 0.090 . PBANKA_0612000 239 IDHILEK|Q- 0.069 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0612000 ATGCGTTTATTTTGGATTTTTATAATAAATTTTATATATTTTTGTGTATGCAAAAAAAAA AAATATATAACTCCATCAAATTTCATTATAGCTCAAACTAATAACATACGACTTAAGAAT AAACTAAGATATTATAATAATGAATATTCAAAACAAAATATTAGTATACCATCTTTGTTG TTATCAAAAAGAATAATATTTTTGTCATCTCCCATATATCCCCATATATCAGAACAAATA ATATCTCAGCTATTATACTTAGAATATGAATCAAAAAGAAAGCCAATTCATTTGTATATT AACAGTACAGGTGATTTAGAAAATAATAAAATTGTTAACTTAAATGGAATTACAGATGTA ATATCAATAATTGATGTAATTAATTATATATCATCAGATGTGTACACATATTGCTTAGGT AAGGCATATGGCATTGCATGTATATTAGCTAGTAGCGGGAAAAAAGGATATCGATTTTCT TTAAAAAATTCATCTTTTTGTTTAAAACAATCTTATTCTATTATACCTTTTAATCAAGCA ACAAATATTGAAATTCAAAATAAAGAAATAATGAACACTAAAAAAAAAGTTATAGATATA ATTGCAAAAAATACAGAAAAAGATAATAATATTATTTCAGAAATATTAGATAGAGATAGA TATTTCAATGCAAATGAAGCTTCTGATTTTAATTTAATAGATCATATTTTGGAAAAACAA TAA
  • Download Fasta

  • Fasta :-

    MRLFWIFIINFIYFCVCKKKKYITPSNFIIAQTNNIRLKNKLRYYNNEYSKQNISIPSLL LSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDV ISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQA TNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ

  • title: active site residues
  • coordinates: G144,K169,D219
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PBANKA_061200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India