PBANKA_0616300 | conserved Plasmodium protein, unknown function

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  • Computed_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_0616300OTHER0.9825750.0000770.017348
No Results

  • Fasta :-

    >PBANKA_0616300 MINHFKKNILLENYMPINYLKKKYVKGNLLFCSYSSKNNCNLYEVGGKPTLLNFHRIRNS VSSIKKIKIHSYNKNNNGIKRSNNKDRVNLFSEKDKKENSNKNEQGIIMYYPENSRFPYV TICVILGMIGISSFFKTLIYNLKNCDNENDLISQVDKILNYLDNYFIIYNFEENEKNTEY KNDIFNIKYLTSQFFLNENILQCAVQMFTFFLASCFLEKHYGSLIYIGLFLSGSLFSNIA TTLFSDIIKSAESLKFINFVLIHPSGSMSFICAFCSIFFQNCAIWKNIPINCSVLIVPFL FSSFYGLLSLYKINKHNLEEVNKINNTNTYEDNSSIERTKFDLENNIIKTVDNDDKKKTV QYVKEDKHNHRNDNFIPYKQNEALNILQNFLIAEKCDSIIKKQKTEHVFLNRKIQNLKKE ALRNIDEINNKYEKIFFSLSSAFTDVFGIVLASTLYLLKILK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0616300.fa Sequence name : PBANKA_0616300 Sequence length : 462 VALUES OF COMPUTED PARAMETERS Coef20 : 3.426 CoefTot : -5.080 ChDiff : 15 ZoneTo : 85 KR : 17 DE : 2 CleavSite : 60 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.106 0.492 0.767 MesoH : 0.893 1.152 0.020 0.476 MuHd_075 : 42.380 26.337 12.945 8.244 MuHd_095 : 34.172 20.840 10.724 7.455 MuHd_100 : 28.445 21.792 9.439 6.425 MuHd_105 : 33.482 26.301 10.718 8.642 Hmax_075 : 12.717 14.900 1.439 5.670 Hmax_095 : -2.700 6.825 -2.030 2.220 Hmax_100 : 5.200 12.200 1.439 4.750 Hmax_105 : 4.200 14.600 0.881 3.650 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1298 0.8702 DFMC : 0.1620 0.8380 This protein is probably imported in mitochondria. f(Ser) = 0.0941 f(Arg) = 0.0353 CMi = 0.78818 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 462 PBANKA_0616300 MINHFKKNILLENYMPINYLKKKYVKGNLLFCSYSSKNNCNLYEVGGKPTLLNFHRIRNSVSSIKKIKIHSYNKNNNGIK 80 RSNNKDRVNLFSEKDKKENSNKNEQGIIMYYPENSRFPYVTICVILGMIGISSFFKTLIYNLKNCDNENDLISQVDKILN 160 YLDNYFIIYNFEENEKNTEYKNDIFNIKYLTSQFFLNENILQCAVQMFTFFLASCFLEKHYGSLIYIGLFLSGSLFSNIA 240 TTLFSDIIKSAESLKFINFVLIHPSGSMSFICAFCSIFFQNCAIWKNIPINCSVLIVPFLFSSFYGLLSLYKINKHNLEE 320 VNKINNTNTYEDNSSIERTKFDLENNIIKTVDNDDKKKTVQYVKEDKHNHRNDNFIPYKQNEALNILQNFLIAEKCDSII 400 KKQKTEHVFLNRKIQNLKKEALRNIDEINNKYEKIFFSLSSAFTDVFGIVLASTLYLLKILK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0616300 6 -MINHFK|KN 0.063 . PBANKA_0616300 7 MINHFKK|NI 0.117 . PBANKA_0616300 21 MPINYLK|KK 0.066 . PBANKA_0616300 22 PINYLKK|KY 0.097 . PBANKA_0616300 23 INYLKKK|YV 0.205 . PBANKA_0616300 26 LKKKYVK|GN 0.058 . PBANKA_0616300 37 FCSYSSK|NN 0.065 . PBANKA_0616300 48 LYEVGGK|PT 0.060 . PBANKA_0616300 56 TLLNFHR|IR 0.079 . PBANKA_0616300 58 LNFHRIR|NS 0.085 . PBANKA_0616300 65 NSVSSIK|KI 0.060 . PBANKA_0616300 66 SVSSIKK|IK 0.102 . PBANKA_0616300 68 SSIKKIK|IH 0.071 . PBANKA_0616300 74 KIHSYNK|NN 0.061 . PBANKA_0616300 80 KNNNGIK|RS 0.063 . PBANKA_0616300 81 NNNGIKR|SN 0.362 . PBANKA_0616300 85 IKRSNNK|DR 0.065 . PBANKA_0616300 87 RSNNKDR|VN 0.140 . PBANKA_0616300 94 VNLFSEK|DK 0.059 . PBANKA_0616300 96 LFSEKDK|KE 0.065 . PBANKA_0616300 97 FSEKDKK|EN 0.109 . PBANKA_0616300 102 KKENSNK|NE 0.070 . PBANKA_0616300 116 YYPENSR|FP 0.068 . PBANKA_0616300 136 GISSFFK|TL 0.077 . PBANKA_0616300 143 TLIYNLK|NC 0.065 . PBANKA_0616300 157 LISQVDK|IL 0.072 . PBANKA_0616300 176 NFEENEK|NT 0.061 . PBANKA_0616300 181 EKNTEYK|ND 0.071 . PBANKA_0616300 188 NDIFNIK|YL 0.069 . PBANKA_0616300 219 ASCFLEK|HY 0.069 . PBANKA_0616300 249 LFSDIIK|SA 0.094 . PBANKA_0616300 255 KSAESLK|FI 0.082 . PBANKA_0616300 286 QNCAIWK|NI 0.062 . PBANKA_0616300 312 GLLSLYK|IN 0.060 . PBANKA_0616300 315 SLYKINK|HN 0.064 . PBANKA_0616300 323 NLEEVNK|IN 0.060 . PBANKA_0616300 338 DNSSIER|TK 0.095 . PBANKA_0616300 340 SSIERTK|FD 0.062 . PBANKA_0616300 349 LENNIIK|TV 0.074 . PBANKA_0616300 356 TVDNDDK|KK 0.059 . PBANKA_0616300 357 VDNDDKK|KT 0.097 . PBANKA_0616300 358 DNDDKKK|TV 0.127 . PBANKA_0616300 364 KTVQYVK|ED 0.056 . PBANKA_0616300 367 QYVKEDK|HN 0.065 . PBANKA_0616300 371 EDKHNHR|ND 0.080 . PBANKA_0616300 379 DNFIPYK|QN 0.067 . PBANKA_0616300 395 NFLIAEK|CD 0.058 . PBANKA_0616300 401 KCDSIIK|KQ 0.053 . PBANKA_0616300 402 CDSIIKK|QK 0.132 . PBANKA_0616300 404 SIIKKQK|TE 0.068 . PBANKA_0616300 412 EHVFLNR|KI 0.077 . PBANKA_0616300 413 HVFLNRK|IQ 0.063 . PBANKA_0616300 418 RKIQNLK|KE 0.053 . PBANKA_0616300 419 KIQNLKK|EA 0.109 . PBANKA_0616300 423 LKKEALR|NI 0.099 . PBANKA_0616300 431 IDEINNK|YE 0.058 . PBANKA_0616300 434 INNKYEK|IF 0.061 . PBANKA_0616300 459 STLYLLK|IL 0.056 . PBANKA_0616300 462 YLLKILK|-- 0.058 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0616300 ATGATAAATCATTTCAAAAAAAATATATTGTTGGAAAATTATATGCCTATAAATTATTTA AAGAAAAAATATGTTAAGGGAAATTTGCTTTTTTGTTCATATAGTTCAAAAAATAATTGC AATTTATATGAAGTTGGGGGGAAACCAACATTATTAAATTTCCATAGGATAAGGAACTCT GTGAGTAGTATCAAGAAAATTAAAATACACAGTTATAATAAAAATAATAATGGAATTAAG AGAAGTAATAATAAAGATCGTGTAAATTTATTTAGTGAAAAAGACAAAAAAGAAAACTCT AATAAAAATGAACAAGGCATTATTATGTATTATCCAGAAAACTCAAGATTTCCATATGTA ACGATTTGTGTGATTTTAGGAATGATAGGAATTTCATCTTTCTTTAAAACTTTAATTTAT AACTTAAAGAATTGTGATAATGAAAACGATTTAATATCGCAAGTAGATAAAATATTAAAC TATTTAGATAACTACTTTATTATATATAATTTTGAAGAAAATGAAAAAAATACAGAATAT AAAAATGACATATTTAATATAAAATATTTAACATCACAATTTTTTTTAAATGAAAATATA CTTCAATGTGCAGTTCAAATGTTTACATTTTTTCTAGCTTCATGTTTCCTTGAAAAGCAT TATGGATCTTTAATATATATTGGATTATTTTTAAGTGGCAGCTTGTTTTCTAACATTGCC ACTACTTTGTTTTCTGATATTATTAAGAGTGCAGAATCATTAAAGTTTATTAACTTTGTT CTTATACACCCATCTGGATCTATGTCCTTTATATGCGCATTTTGTTCCATTTTTTTCCAA AATTGTGCTATATGGAAAAATATACCAATTAACTGTTCTGTATTAATCGTACCATTTTTA TTCTCAAGCTTTTATGGGCTCTTATCATTATATAAAATTAATAAGCATAATTTAGAAGAA GTAAATAAGATAAATAACACAAACACATATGAAGACAATAGTTCGATTGAAAGAACAAAA TTCGATTTAGAAAATAATATTATTAAAACCGTTGATAACGATGATAAAAAAAAAACTGTG CAGTATGTAAAGGAAGATAAGCATAATCATAGAAATGATAATTTCATTCCTTATAAACAA AACGAAGCTCTAAATATATTACAAAATTTCTTAATAGCTGAGAAATGTGATTCAATAATA AAGAAACAGAAAACAGAACATGTTTTTTTAAATAGAAAAATCCAAAACTTAAAAAAAGAA GCACTAAGAAATATTGATGAAATAAATAATAAATATGAAAAAATATTTTTTAGTCTCTCT TCCGCATTTACAGATGTATTTGGTATTGTCTTAGCATCAACGCTTTATTTGCTCAAAATT TTGAAATGA
  • Download Fasta

  • Fasta :-

    MINHFKKNILLENYMPINYLKKKYVKGNLLFCSYSSKNNCNLYEVGGKPTLLNFHRIRNS VSSIKKIKIHSYNKNNNGIKRSNNKDRVNLFSEKDKKENSNKNEQGIIMYYPENSRFPYV TICVILGMIGISSFFKTLIYNLKNCDNENDLISQVDKILNYLDNYFIIYNFEENEKNTEY KNDIFNIKYLTSQFFLNENILQCAVQMFTFFLASCFLEKHYGSLIYIGLFLSGSLFSNIA TTLFSDIIKSAESLKFINFVLIHPSGSMSFICAFCSIFFQNCAIWKNIPINCSVLIVPFL FSSFYGLLSLYKINKHNLEEVNKINNTNTYEDNSSIERTKFDLENNIIKTVDNDDKKKTV QYVKEDKHNHRNDNFIPYKQNEALNILQNFLIAEKCDSIIKKQKTEHVFLNRKIQNLKKE ALRNIDEINNKYEKIFFSLSSAFTDVFGIVLASTLYLLKILK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0616300335 SEDNSSIERT0.996unspPBANKA_0616300335 SEDNSSIERT0.996unspPBANKA_0616300335 SEDNSSIERT0.996unspPBANKA_061630063 SNSVSSIKKI0.996unspPBANKA_061630092 SVNLFSEKDK0.997unsp

PBANKA_061630      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India